HEADER BIOSYNTHETIC PROTEIN 11-SEP-24 9GR8 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL KINASE DOMAIN FROM SACCHAROMYCES TITLE 2 CEREVISIAE VIP1 IN COMPLEX WITH ADP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL- COMPND 3 PENTAKISPHOSPHATE KINASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: INSP6 AND PP-IP5 KINASE; COMPND 6 EC: 2.7.4.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: VIP1, YLR410W; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: TNAO KEYWDS INOSITOL PYROPHOSPHATE, INOSITOL PYROPHOSPHATE PHOSPHATASE, HISTIDINE KEYWDS 2 ACID PHOSPHATASE, PHYTASE, ENZYME MECHANISM, GAF DOMAIN, PHOSPHATE KEYWDS 3 HOMEOSTASIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.LEE,P.RAIA,M.HOTHORN REVDAT 1 26-FEB-25 9GR8 0 JRNL AUTH P.RAIA,K.LEE,S.M.BARTSCH,F.RICO-RESENDIZ,D.PORTUGAL-CALISTO, JRNL AUTH 2 O.VADAS,V.G.PANSE,D.FIEDLER,M.HOTHORN JRNL TITL A SMALL SIGNALING DOMAIN CONTROLS PPIP5K PHOSPHATASE JRNL TITL 2 ACTIVITY IN PHOSPHATE HOMEOSTASIS. JRNL REF NAT COMMUN V. 16 1753 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39966396 JRNL DOI 10.1038/S41467-025-56937-0 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 215318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8600 - 3.6600 1.00 7070 369 0.1459 0.1703 REMARK 3 2 3.6600 - 2.9100 1.00 7010 367 0.1357 0.1444 REMARK 3 3 2.9100 - 2.5400 1.00 7084 377 0.1338 0.1875 REMARK 3 4 2.5400 - 2.3100 0.99 7060 374 0.1197 0.1499 REMARK 3 5 2.3100 - 2.1400 1.00 6985 367 0.1097 0.1391 REMARK 3 6 2.1400 - 2.0200 0.99 7036 373 0.1117 0.1481 REMARK 3 7 2.0200 - 1.9100 0.99 7025 372 0.1211 0.1673 REMARK 3 8 1.9100 - 1.8300 0.99 7044 370 0.1142 0.1656 REMARK 3 9 1.8300 - 1.7600 0.99 6963 368 0.1206 0.1553 REMARK 3 10 1.7600 - 1.7000 0.99 7007 369 0.1298 0.1586 REMARK 3 11 1.7000 - 1.6500 0.98 6991 368 0.1347 0.1744 REMARK 3 12 1.6500 - 1.6000 0.99 6951 369 0.1432 0.1933 REMARK 3 13 1.6000 - 1.5600 0.98 6922 366 0.1526 0.1957 REMARK 3 14 1.5600 - 1.5200 0.98 6932 364 0.1595 0.1756 REMARK 3 15 1.5200 - 1.4900 0.98 6940 368 0.1637 0.1989 REMARK 3 16 1.4900 - 1.4500 0.98 6870 363 0.1787 0.1992 REMARK 3 17 1.4500 - 1.4200 0.97 6953 369 0.1890 0.2370 REMARK 3 18 1.4200 - 1.4000 0.97 6841 360 0.2047 0.2265 REMARK 3 19 1.4000 - 1.3700 0.97 6892 366 0.2166 0.2563 REMARK 3 20 1.3700 - 1.3500 0.97 6873 359 0.2201 0.2178 REMARK 3 21 1.3500 - 1.3300 0.97 6811 359 0.2395 0.2600 REMARK 3 22 1.3300 - 1.3100 0.97 6814 358 0.2585 0.3071 REMARK 3 23 1.3100 - 1.2900 0.95 6811 355 0.2677 0.2935 REMARK 3 24 1.2900 - 1.2700 0.94 6669 349 0.2845 0.3213 REMARK 3 25 1.2700 - 1.2500 0.94 6650 346 0.2871 0.3077 REMARK 3 26 1.2500 - 1.2400 0.92 6466 345 0.2983 0.3081 REMARK 3 27 1.2400 - 1.2200 0.91 6465 335 0.2997 0.3156 REMARK 3 28 1.2200 - 1.2100 0.90 6403 333 0.3244 0.3363 REMARK 3 29 1.2100 - 1.1900 0.87 6130 323 0.3328 0.3527 REMARK 3 30 1.1900 - 1.1800 0.83 5884 305 0.3401 0.3555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2974 REMARK 3 ANGLE : 1.288 4039 REMARK 3 CHIRALITY : 0.094 431 REMARK 3 PLANARITY : 0.014 525 REMARK 3 DIHEDRAL : 14.424 1178 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000036 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 220120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 43.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % [V/V] PEG 3,350, 0.1 M CITRIC REMARK 280 ACID / BIS-TRIS PROPANE PH 6.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.58600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 717 O HOH A 882 2.14 REMARK 500 OD2 ASP A 487 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 512 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE A 512 CG - CD2 - CE2 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 222 -67.70 -96.73 REMARK 500 VAL A 391 -38.33 -134.52 REMARK 500 ASN A 409 19.37 56.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 231 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1070 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1071 DISTANCE = 6.78 ANGSTROMS DBREF 9GR8 A 186 520 UNP Q06685 VIP1_YEAST 186 520 SEQADV 9GR8 GLY A 184 UNP Q06685 EXPRESSION TAG SEQADV 9GR8 ALA A 185 UNP Q06685 EXPRESSION TAG SEQRES 1 A 337 GLY ALA LYS VAL GLY LYS ILE GLY VAL CYS ALA MET ASP SEQRES 2 A 337 ALA LYS VAL LEU SER LYS PRO MET ARG HIS ILE LEU ASN SEQRES 3 A 337 ARG LEU ILE GLU HIS GLY GLU PHE GLU THR VAL ILE PHE SEQRES 4 A 337 GLY ASP LYS VAL ILE LEU ASP GLU ARG ILE GLU ASN TRP SEQRES 5 A 337 PRO THR CYS ASP PHE LEU ILE SER PHE PHE SER SER GLY SEQRES 6 A 337 PHE PRO LEU ASP LYS ALA ILE LYS TYR VAL LYS LEU ARG SEQRES 7 A 337 LYS PRO PHE ILE ILE ASN ASP LEU ILE MET GLN LYS ILE SEQRES 8 A 337 LEU TRP ASP ARG ARG LEU CYS LEU GLN VAL LEU GLU ALA SEQRES 9 A 337 TYR ASN VAL PRO THR PRO PRO ARG LEU GLU ILE SER ARG SEQRES 10 A 337 ASP GLY GLY PRO ARG ALA ASN GLU GLU LEU ARG ALA LYS SEQRES 11 A 337 LEU ARG GLU HIS GLY VAL GLU VAL LYS PRO VAL GLU GLU SEQRES 12 A 337 PRO GLU TRP LYS MET VAL ASP ASP ASP THR LEU GLU VAL SEQRES 13 A 337 ASP GLY LYS THR MET THR LYS PRO PHE VAL GLU LYS PRO SEQRES 14 A 337 VAL ASP GLY GLU ASP HIS ASN ILE TYR ILE TYR TYR HIS SEQRES 15 A 337 SER LYS ASN GLY GLY GLY GLY ARG ARG LEU PHE ARG LYS SEQRES 16 A 337 VAL GLY ASN LYS SER SER GLU PHE ASP PRO THR LEU VAL SEQRES 17 A 337 HIS PRO ARG THR GLU GLY SER TYR ILE TYR GLU GLN PHE SEQRES 18 A 337 MET ASP THR ASP ASN PHE GLU ASP VAL LYS ALA TYR THR SEQRES 19 A 337 ILE GLY GLU ASN PHE CYS HIS ALA GLU THR ARG LYS SER SEQRES 20 A 337 PRO VAL VAL ASP GLY ILE VAL ARG ARG ASN THR HIS GLY SEQRES 21 A 337 LYS GLU VAL ARG TYR ILE THR GLU LEU SER ASP GLU GLU SEQRES 22 A 337 LYS THR ILE ALA GLY LYS VAL SER LYS ALA PHE SER GLN SEQRES 23 A 337 MET ILE CYS GLY PHE ASP LEU LEU ARG VAL SER GLY LYS SEQRES 24 A 337 SER TYR VAL ILE ASP VAL ASN GLY PHE SER PHE VAL LYS SEQRES 25 A 337 ASP ASN LYS ALA TYR TYR ASP SER CYS ALA ASN ILE LEU SEQRES 26 A 337 ARG SER THR PHE ILE GLU ALA LYS LYS LYS MET ASP HET ADP A 600 38 HET EDO A 601 10 HET EDO A 602 10 HET EDO A 603 10 HET EDO A 604 10 HET EDO A 605 10 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *371(H2 O) HELIX 1 AA1 MET A 195 LEU A 200 1 6 HELIX 2 AA2 SER A 201 GLU A 213 1 13 HELIX 3 AA3 GLY A 223 GLU A 230 1 8 HELIX 4 AA4 ARG A 231 TRP A 235 5 5 HELIX 5 AA5 PRO A 250 LYS A 262 1 13 HELIX 6 AA6 LEU A 269 TRP A 276 5 8 HELIX 7 AA7 ASP A 277 TYR A 288 1 12 HELIX 8 AA8 ASN A 307 HIS A 317 1 11 HELIX 9 AA9 HIS A 365 GLY A 369 5 5 HELIX 10 AB1 THR A 407 ASN A 409 5 3 HELIX 11 AB2 SER A 453 SER A 468 1 16 HELIX 12 AB3 ASN A 497 ASP A 520 1 24 SHEET 1 AA1 4 PHE A 217 ILE A 221 0 SHEET 2 AA1 4 GLY A 188 CYS A 193 1 N ILE A 190 O GLU A 218 SHEET 3 AA1 4 PHE A 240 SER A 243 1 O ILE A 242 N GLY A 191 SHEET 4 AA1 4 PHE A 264 ILE A 265 1 O PHE A 264 N LEU A 241 SHEET 1 AA2 6 ARG A 295 ILE A 298 0 SHEET 2 AA2 6 TYR A 399 GLN A 403 -1 O TYR A 401 N LEU A 296 SHEET 3 AA2 6 PHE A 348 PRO A 352 -1 N LYS A 351 O ILE A 400 SHEET 4 AA2 6 TYR A 361 TYR A 363 -1 O TYR A 361 N GLU A 350 SHEET 5 AA2 6 GLY A 372 LYS A 378 -1 O ARG A 373 N ILE A 362 SHEET 6 AA2 6 ASN A 381 ASP A 387 -1 O ASN A 381 N LYS A 378 SHEET 1 AA3 3 TRP A 329 ASP A 333 0 SHEET 2 AA3 3 THR A 336 VAL A 339 -1 O GLU A 338 N LYS A 330 SHEET 3 AA3 3 LYS A 342 THR A 345 -1 O LYS A 342 N VAL A 339 SHEET 1 AA4 5 TYR A 448 ILE A 449 0 SHEET 2 AA4 5 CYS A 423 LYS A 429 -1 N THR A 427 O TYR A 448 SHEET 3 AA4 5 GLU A 411 ILE A 418 -1 N LYS A 414 O GLU A 426 SHEET 4 AA4 5 ILE A 471 VAL A 479 -1 O CYS A 472 N THR A 417 SHEET 5 AA4 5 LYS A 482 GLY A 490 -1 O LYS A 482 N VAL A 479 CISPEP 1 LYS A 346 PRO A 347 0 6.07 CRYST1 40.675 83.172 51.768 90.00 94.32 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024585 0.000000 0.001857 0.00000 SCALE2 0.000000 0.012023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019372 0.00000