HEADER TRANSFERASE 19-SEP-24 9GUC TITLE ADHIRON-MEDIATED IDENTIFICATION OF A NOVEL AND SELECTIVE ALLOSTERIC TITLE 2 POCKET IN AURORA KINASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: AURORA KINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AURORA 2,AURORA/IPL1-RELATED KINASE 1,ARK-1,AURORA-RELATED COMPND 5 KINASE 1,BREAST TUMOR-AMPLIFIED KINASE,IPL1- AND AURORA-RELATED COMPND 6 KINASE 1,SERINE/THREONINE-PROTEIN KINASE 15,SERINE/THREONINE-PROTEIN COMPND 7 KINASE 6,SERINE/THREONINE-PROTEIN KINASE AYK1,SERINE/THREONINE- COMPND 8 PROTEIN KINASE AURORA-A; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: AFFIMER (JR-AFF7); COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AURKA, AIK, AIRK1, ARK1, AURA, AYK1, BTAK, IAK1, STK15, STK6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, AFFIMER, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.ROBERTS,J.A.MILES,F.BLINKHORNE,T.G.GAULE,R.W.BAYLISS,C.A.JOHNSON, AUTHOR 2 D.C.TOMLINSON REVDAT 1 01-OCT-25 9GUC 0 JRNL AUTH J.P.ROBERTS,J.HOLDER,J.A.MILES,F.BLINKHORNE,C.TIEDE, JRNL AUTH 2 T.G.GAULE,P.A.CORDELL,I.MOHAN,G.B.SHAMI-INKINDI,C.E.SMITH, JRNL AUTH 3 R.W.BAYLISS,C.A.JOHNSON,D.C.TOMLINSON JRNL TITL IDENTIFICATION OF THE NOVEL, DRUGGABLE T-POCKET ON AURORA JRNL TITL 2 KINASE A: REVEALING A SELECTIVE MECHANISM OF AFFIMER JRNL TITL 3 MEDIATED ALLOSTERIC KINASE INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.785 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25300 REMARK 3 B22 (A**2) : -0.25300 REMARK 3 B33 (A**2) : 0.82100 REMARK 3 B12 (A**2) : -0.12700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2874 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2701 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3890 ; 1.745 ; 1.866 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6227 ; 0.588 ; 1.772 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ;10.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 499 ;13.905 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3309 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 556 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 38 ; 0.276 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1390 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 3.821 ; 3.873 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1351 ; 3.817 ; 3.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1684 ; 5.391 ; 6.927 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1685 ; 5.390 ; 6.928 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1523 ; 5.035 ; 4.506 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1524 ; 5.034 ; 4.507 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2205 ; 7.517 ; 7.995 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2206 ; 7.515 ; 7.996 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9GUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6199 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS (MORPHEOUS REMARK 280 -FUSION)CONDITION E6 90 MM LINAK; 1.2 % CHOLIC ACID DERIVATIVE; REMARK 280 0.1 M BUFFER SYSTEM 2 (0.5M SODIUM HEPES; 0.5M MOPS (ACID)); REMARK 280 7.5PH; 30 % PRECIPITANT MIX 1 (40% V/V PEG 500 MME; 20 % W/V PEG REMARK 280 20000), PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.35000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.70000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.70000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 MET A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 GLY A 276 REMARK 465 TRP A 277 REMARK 465 SER A 278 REMARK 465 VAL A 279 REMARK 465 HIS A 280 REMARK 465 ALA A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 SER A 284 REMARK 465 ARG A 285 REMARK 465 ARG A 286 REMARK 465 THR A 287 REMARK 465 ASN A 392 REMARK 465 ALA A 393 REMARK 465 GLN A 394 REMARK 465 ASN A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 SER A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 ALA B 89 REMARK 465 ALA B 90 REMARK 465 ALA B 91 REMARK 465 ALA B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 174 CG1 CG2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 MET A 305 CE REMARK 470 LYS A 326 CD CE NZ REMARK 470 GLU A 354 CD OE1 OE2 REMARK 470 SER B 5 OG REMARK 470 LEU B 6 CB CG CD1 CD2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 VAL B 44 CG1 CG2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 62 CE NZ REMARK 470 ALA B 73 CB REMARK 470 ALA B 74 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 166 HD1 HIS A 201 1.20 REMARK 500 HG1 THR A 235 H SER A 388 1.28 REMARK 500 HD1 HIS A 190 H ASN A 192 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 171 -8.87 -59.61 REMARK 500 SER A 226 -48.40 76.04 REMARK 500 ASP A 256 38.84 -155.63 REMARK 500 ASP A 307 -159.27 -151.54 REMARK 500 LEU A 364 51.96 -93.79 REMARK 500 LEU B 6 -71.63 -90.73 REMARK 500 ARG B 43 -125.12 51.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 251 0.09 SIDE CHAIN REMARK 500 ARG A 343 0.12 SIDE CHAIN REMARK 500 ARG A 371 0.10 SIDE CHAIN REMARK 500 ARG A 375 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 261 OD1 REMARK 620 2 ASP A 274 OD2 80.5 REMARK 620 3 ADP A 501 O1B 143.8 76.6 REMARK 620 4 ADP A 501 O2A 152.2 88.6 54.7 REMARK 620 N 1 2 3 DBREF 9GUC A 122 403 UNP O14965 AURKA_HUMAN 122 403 DBREF 9GUC B 1 100 PDB 9GUC 9GUC 1 100 SEQADV 9GUC GLY A 119 UNP O14965 EXPRESSION TAG SEQADV 9GUC ALA A 120 UNP O14965 EXPRESSION TAG SEQADV 9GUC MET A 121 UNP O14965 EXPRESSION TAG SEQADV 9GUC ALA A 290 UNP O14965 CYS 290 ENGINEERED MUTATION SEQADV 9GUC ALA A 393 UNP O14965 CYS 393 ENGINEERED MUTATION SEQRES 1 A 285 GLY ALA MET GLU SER LYS LYS ARG GLN TRP ALA LEU GLU SEQRES 2 A 285 ASP PHE GLU ILE GLY ARG PRO LEU GLY LYS GLY LYS PHE SEQRES 3 A 285 GLY ASN VAL TYR LEU ALA ARG GLU LYS GLN SER LYS PHE SEQRES 4 A 285 ILE LEU ALA LEU LYS VAL LEU PHE LYS ALA GLN LEU GLU SEQRES 5 A 285 LYS ALA GLY VAL GLU HIS GLN LEU ARG ARG GLU VAL GLU SEQRES 6 A 285 ILE GLN SER HIS LEU ARG HIS PRO ASN ILE LEU ARG LEU SEQRES 7 A 285 TYR GLY TYR PHE HIS ASP ALA THR ARG VAL TYR LEU ILE SEQRES 8 A 285 LEU GLU TYR ALA PRO LEU GLY THR VAL TYR ARG GLU LEU SEQRES 9 A 285 GLN LYS LEU SER LYS PHE ASP GLU GLN ARG THR ALA THR SEQRES 10 A 285 TYR ILE THR GLU LEU ALA ASN ALA LEU SER TYR CYS HIS SEQRES 11 A 285 SER LYS ARG VAL ILE HIS ARG ASP ILE LYS PRO GLU ASN SEQRES 12 A 285 LEU LEU LEU GLY SER ALA GLY GLU LEU LYS ILE ALA ASP SEQRES 13 A 285 PHE GLY TRP SER VAL HIS ALA PRO SER SER ARG ARG THR SEQRES 14 A 285 THR LEU ALA GLY THR LEU ASP TYR LEU PRO PRO GLU MET SEQRES 15 A 285 ILE GLU GLY ARG MET HIS ASP GLU LYS VAL ASP LEU TRP SEQRES 16 A 285 SER LEU GLY VAL LEU CYS TYR GLU PHE LEU VAL GLY LYS SEQRES 17 A 285 PRO PRO PHE GLU ALA ASN THR TYR GLN GLU THR TYR LYS SEQRES 18 A 285 ARG ILE SER ARG VAL GLU PHE THR PHE PRO ASP PHE VAL SEQRES 19 A 285 THR GLU GLY ALA ARG ASP LEU ILE SER ARG LEU LEU LYS SEQRES 20 A 285 HIS ASN PRO SER GLN ARG PRO MET LEU ARG GLU VAL LEU SEQRES 21 A 285 GLU HIS PRO TRP ILE THR ALA ASN SER SER LYS PRO SER SEQRES 22 A 285 ASN ALA GLN ASN LYS GLU SER ALA SER LYS GLN SER SEQRES 1 B 100 MET ALA SER ASN SER LEU GLU ILE GLU GLU LEU ALA ARG SEQRES 2 B 100 PHE ALA VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU SEQRES 3 B 100 LEU GLU PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN MET SEQRES 4 B 100 PHE GLN TRP ARG VAL GLU PHE ILE THR MET TYR TYR LEU SEQRES 5 B 100 THR LEU GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR SEQRES 6 B 100 GLU ALA LYS VAL TRP VAL LYS ALA ALA GLU ASN PHE LYS SEQRES 7 B 100 GLU LEU GLN GLU PHE LYS PRO VAL GLY ASP ALA ALA ALA SEQRES 8 B 100 ALA HIS HIS HIS HIS HIS HIS HIS HIS HET ADP A 501 39 HET EPE A 502 33 HET AMP A 503 35 HET MG A 504 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN EPE HEPES FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 MG MG 2+ FORMUL 7 HOH *95(H2 O) HELIX 1 AA1 ALA A 129 GLU A 131 5 3 HELIX 2 AA2 LYS A 166 LYS A 171 1 6 HELIX 3 AA3 VAL A 174 LEU A 188 1 15 HELIX 4 AA4 THR A 217 SER A 226 1 10 HELIX 5 AA5 ASP A 229 LYS A 250 1 22 HELIX 6 AA6 LYS A 258 GLU A 260 5 3 HELIX 7 AA7 ASP A 294 LEU A 296 5 3 HELIX 8 AA8 PRO A 297 GLU A 302 1 6 HELIX 9 AA9 LYS A 309 GLY A 325 1 17 HELIX 10 AB1 THR A 333 ARG A 343 1 11 HELIX 11 AB2 THR A 353 LEU A 364 1 12 HELIX 12 AB3 ASN A 367 ARG A 371 5 5 HELIX 13 AB4 MET A 373 GLU A 379 1 7 HELIX 14 AB5 HIS A 380 SER A 387 1 8 HELIX 15 AB6 LEU B 6 ASN B 24 1 19 HELIX 16 AB7 ALA B 73 ASN B 76 5 4 SHEET 1 AA1 5 PHE A 133 LYS A 141 0 SHEET 2 AA1 5 ASN A 146 GLU A 152 -1 O VAL A 147 N LEU A 139 SHEET 3 AA1 5 ILE A 158 PHE A 165 -1 O LEU A 159 N ALA A 150 SHEET 4 AA1 5 ARG A 205 LEU A 210 -1 O LEU A 210 N ALA A 160 SHEET 5 AA1 5 LEU A 196 HIS A 201 -1 N PHE A 200 O TYR A 207 SHEET 1 AA2 2 LEU A 262 LEU A 264 0 SHEET 2 AA2 2 LEU A 270 ILE A 272 -1 O LYS A 271 N LEU A 263 SHEET 1 AA3 5 LEU A 289 THR A 292 0 SHEET 2 AA3 5 GLU B 28 TRP B 42 1 O MET B 39 N ALA A 290 SHEET 3 AA3 5 GLU B 45 ASP B 58 -1 O ILE B 47 N PHE B 40 SHEET 4 AA3 5 LYS B 61 LYS B 72 -1 O TYR B 65 N LEU B 54 SHEET 5 AA3 5 PHE B 77 PRO B 85 -1 O GLN B 81 N LYS B 68 LINK OD1 ASN A 261 MG MG A 504 1555 1555 2.75 LINK OD2 ASP A 274 MG MG A 504 1555 1555 2.87 LINK O1B ADP A 501 MG MG A 504 1555 1555 2.96 LINK O2A ADP A 501 MG MG A 504 1555 1555 2.69 CRYST1 88.920 88.920 100.050 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011246 0.006493 0.000000 0.00000 SCALE2 0.000000 0.012986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009995 0.00000 CONECT 2308 5606 CONECT 2500 5606 CONECT 5499 5500 5501 5502 5506 CONECT 5500 5499 5606 CONECT 5501 5499 CONECT 5502 5499 CONECT 5503 5504 5505 5506 5507 CONECT 5504 5503 CONECT 5505 5503 5606 CONECT 5506 5499 5503 CONECT 5507 5503 5508 CONECT 5508 5507 5509 5526 5527 CONECT 5509 5508 5510 5511 5528 CONECT 5510 5509 5515 CONECT 5511 5509 5512 5513 5529 CONECT 5512 5511 5530 CONECT 5513 5511 5514 5515 5531 CONECT 5514 5513 5532 CONECT 5515 5510 5513 5516 5533 CONECT 5516 5515 5517 5525 CONECT 5517 5516 5518 5534 CONECT 5518 5517 5519 CONECT 5519 5518 5520 5525 CONECT 5520 5519 5521 5522 CONECT 5521 5520 5535 5536 CONECT 5522 5520 5523 CONECT 5523 5522 5524 5537 CONECT 5524 5523 5525 CONECT 5525 5516 5519 5524 CONECT 5526 5508 CONECT 5527 5508 CONECT 5528 5509 CONECT 5529 5511 CONECT 5530 5512 CONECT 5531 5513 CONECT 5532 5514 CONECT 5533 5515 CONECT 5534 5517 CONECT 5535 5521 CONECT 5536 5521 CONECT 5537 5523 CONECT 5538 5539 5543 5547 CONECT 5539 5538 5540 5553 5554 CONECT 5540 5539 5541 5555 5556 CONECT 5541 5540 5542 5544 CONECT 5542 5541 5543 5557 5558 CONECT 5543 5538 5542 5559 5560 CONECT 5544 5541 5545 5561 5562 CONECT 5545 5544 5546 5563 5564 CONECT 5546 5545 5565 CONECT 5547 5538 5548 5566 5567 CONECT 5548 5547 5549 5568 5569 CONECT 5549 5548 5550 5551 5552 CONECT 5550 5549 CONECT 5551 5549 CONECT 5552 5549 5570 CONECT 5553 5539 CONECT 5554 5539 CONECT 5555 5540 CONECT 5556 5540 CONECT 5557 5542 CONECT 5558 5542 CONECT 5559 5543 CONECT 5560 5543 CONECT 5561 5544 CONECT 5562 5544 CONECT 5563 5545 CONECT 5564 5545 CONECT 5565 5546 CONECT 5566 5547 CONECT 5567 5547 CONECT 5568 5548 CONECT 5569 5548 CONECT 5570 5552 CONECT 5571 5572 5573 5574 5575 CONECT 5572 5571 CONECT 5573 5571 CONECT 5574 5571 CONECT 5575 5571 5576 CONECT 5576 5575 5577 5594 5595 CONECT 5577 5576 5578 5579 5596 CONECT 5578 5577 5583 CONECT 5579 5577 5580 5581 5597 CONECT 5580 5579 5598 CONECT 5581 5579 5582 5583 5599 CONECT 5582 5581 5600 CONECT 5583 5578 5581 5584 5601 CONECT 5584 5583 5585 5593 CONECT 5585 5584 5586 5602 CONECT 5586 5585 5587 CONECT 5587 5586 5588 5593 CONECT 5588 5587 5589 5590 CONECT 5589 5588 5603 5604 CONECT 5590 5588 5591 CONECT 5591 5590 5592 5605 CONECT 5592 5591 5593 CONECT 5593 5584 5587 5592 CONECT 5594 5576 CONECT 5595 5576 CONECT 5596 5577 CONECT 5597 5579 CONECT 5598 5580 CONECT 5599 5581 CONECT 5600 5582 CONECT 5601 5583 CONECT 5602 5585 CONECT 5603 5589 CONECT 5604 5589 CONECT 5605 5591 CONECT 5606 2308 2500 5500 5505 MASTER 399 0 4 16 12 0 0 6 2893 2 110 30 END