HEADER HYDROLASE 24-SEP-24 9GVE TITLE STRUCTURE OF PHOSPHONATE MONOESTER HYDROLASE FROM RHIZOBIUM TITLE 2 LEGUMINOSARUM WITH PHENYL PHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL ALKALINE PHOSPHATASE SUPERFAMILY PROTEIN COMPND 3 PRL90232; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PHOSPHODIESTERASE,PHOSPHONATE MONOESTER HYDROLASE,RLPMH; COMPND 6 EC: 3.1.4.-,3.1.3.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: C57 IS POSTTRANSLATIONALLY MODIFIED TO FORMYLGLYCINE COMPND 10 (FGLY, DDZ) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM JOHNSTONII 3841; SOURCE 3 ORGANISM_TAXID: 216596; SOURCE 4 GENE: PRL90232; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHONATE MONOESTER HYDROLASE, PROMISCUOUS ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JONAS,M.HYVONEN,F.HOLLFELDER REVDAT 1 08-OCT-25 9GVE 0 JRNL AUTH M.F.MOHAMED,S.JONAS,C.MITON,B.VAN LOO,M.HYVONEN,F.HOLLFELDER JRNL TITL EFFICIENT LEAVING GROUP STABILIZATION AND HYDROPHOBIC JRNL TITL 2 BINDING MAKE PHOSPHONATE MONOESTER HYDROLASE (PMH) AN JRNL TITL 3 EXCEPTIONALLY PROMISCUOUS ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 83921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3400 - 4.6400 0.98 2778 191 0.1330 0.1253 REMARK 3 2 4.6400 - 3.6800 0.99 2739 137 0.1121 0.1092 REMARK 3 3 3.6800 - 3.2200 0.99 2691 162 0.1318 0.1593 REMARK 3 4 3.2200 - 2.9200 1.00 2715 135 0.1489 0.1712 REMARK 3 5 2.9200 - 2.7100 1.00 2683 157 0.1600 0.1722 REMARK 3 6 2.7100 - 2.5500 1.00 2723 132 0.1570 0.1731 REMARK 3 7 2.5500 - 2.4300 1.00 2661 162 0.1550 0.1845 REMARK 3 8 2.4300 - 2.3200 1.00 2658 163 0.1537 0.1797 REMARK 3 9 2.3200 - 2.2300 1.00 2664 152 0.1501 0.1811 REMARK 3 10 2.2300 - 2.1500 1.00 2693 133 0.1533 0.1764 REMARK 3 11 2.1500 - 2.0900 1.00 2645 147 0.1586 0.1660 REMARK 3 12 2.0900 - 2.0300 1.00 2681 136 0.1569 0.1700 REMARK 3 13 2.0300 - 1.9700 1.00 2669 138 0.1606 0.1774 REMARK 3 14 1.9700 - 1.9300 1.00 2665 131 0.1693 0.1690 REMARK 3 15 1.9300 - 1.8800 1.00 2673 151 0.1746 0.2255 REMARK 3 16 1.8800 - 1.8400 1.00 2688 115 0.1903 0.2058 REMARK 3 17 1.8400 - 1.8100 1.00 2661 151 0.2025 0.2491 REMARK 3 18 1.8100 - 1.7700 1.00 2633 139 0.2046 0.2251 REMARK 3 19 1.7700 - 1.7400 1.00 2656 140 0.2257 0.2342 REMARK 3 20 1.7400 - 1.7100 1.00 2671 132 0.2293 0.2512 REMARK 3 21 1.7100 - 1.6800 1.00 2646 127 0.2448 0.2598 REMARK 3 22 1.6800 - 1.6600 1.00 2679 120 0.2687 0.3418 REMARK 3 23 1.6600 - 1.6300 1.00 2627 140 0.2820 0.2953 REMARK 3 24 1.6300 - 1.6100 1.00 2678 145 0.2972 0.3124 REMARK 3 25 1.6100 - 1.5900 1.00 2651 128 0.3158 0.3377 REMARK 3 26 1.5900 - 1.5700 1.00 2662 148 0.3333 0.3832 REMARK 3 27 1.5700 - 1.5500 1.00 2653 147 0.3475 0.3838 REMARK 3 28 1.5500 - 1.5300 1.00 2628 135 0.3779 0.4130 REMARK 3 29 1.5300 - 1.5100 1.00 2644 132 0.3933 0.4265 REMARK 3 30 1.5100 - 1.4900 0.82 2154 126 0.5032 0.4961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.728 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4232 REMARK 3 ANGLE : 0.880 5774 REMARK 3 CHIRALITY : 0.088 606 REMARK 3 PLANARITY : 0.009 770 REMARK 3 DIHEDRAL : 14.477 1563 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2335 15.1511 63.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1632 REMARK 3 T33: 0.1709 T12: -0.0240 REMARK 3 T13: -0.0226 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.0709 REMARK 3 L33: 0.0674 L12: -0.0367 REMARK 3 L13: 0.0359 L23: -0.0698 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.0012 S13: -0.0190 REMARK 3 S21: -0.0824 S22: 0.0110 S23: 0.0722 REMARK 3 S31: 0.0753 S32: -0.0378 S33: 0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4152 26.9542 77.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1548 REMARK 3 T33: 0.1470 T12: 0.0091 REMARK 3 T13: 0.0013 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0586 L22: 0.0477 REMARK 3 L33: 0.1084 L12: 0.0061 REMARK 3 L13: -0.0199 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0166 S13: 0.0149 REMARK 3 S21: -0.0029 S22: 0.0015 S23: -0.0057 REMARK 3 S31: 0.0295 S32: 0.0292 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3895 20.4178 65.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.1268 REMARK 3 T33: 0.1335 T12: -0.0048 REMARK 3 T13: -0.0015 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0743 L22: 0.2295 REMARK 3 L33: 0.3011 L12: 0.0160 REMARK 3 L13: -0.0210 L23: -0.0383 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0032 S13: -0.0069 REMARK 3 S21: -0.0646 S22: 0.0158 S23: 0.0046 REMARK 3 S31: 0.0839 S32: -0.0061 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 514 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1188 42.4897 55.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1455 REMARK 3 T33: 0.1486 T12: -0.0072 REMARK 3 T13: 0.0000 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1303 L22: 0.1065 REMARK 3 L33: 0.1237 L12: 0.0157 REMARK 3 L13: 0.0868 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0157 S13: 0.0122 REMARK 3 S21: -0.0856 S22: 0.0262 S23: 0.0051 REMARK 3 S31: 0.0234 S32: -0.0137 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9728 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 48.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.21.1_5286 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 25% PEG 4000, REMARK 280 0.2M SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.06800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.23650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.58550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.06800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.23650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.58550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.06800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.23650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.58550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.06800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.23650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.58550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.13600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.47300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 60.13600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 179.17100 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 96.47300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 179.17100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1036 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -28 REMARK 465 ALA A -27 REMARK 465 SER A -26 REMARK 465 TRP A -25 REMARK 465 SER A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLU A -19 REMARK 465 LYS A -18 REMARK 465 GLY A -17 REMARK 465 ALA A -16 REMARK 465 GLU A -15 REMARK 465 THR A -14 REMARK 465 ALA A -13 REMARK 465 VAL A -12 REMARK 465 PRO A -11 REMARK 465 ASN A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 GLN A 404 CG CD OE1 NE2 REMARK 470 GLU A 507 CG CD OE1 OE2 REMARK 470 HIS A 514 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 716 O HOH A 1266 2.08 REMARK 500 O HOH A 712 O HOH A 1132 2.09 REMARK 500 O HOH A 1215 O HOH A 1277 2.14 REMARK 500 O HOH A 1086 O HOH A 1285 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 -141.87 -85.08 REMARK 500 THR A 79 -3.93 79.57 REMARK 500 GLU A 139 157.80 74.15 REMARK 500 ASN A 141 15.92 59.91 REMARK 500 SER A 399 -83.12 -114.41 REMARK 500 CYS A 435 56.28 -105.39 REMARK 500 ALA A 452 24.24 -148.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1376 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1377 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1378 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 600 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 ASP A 12 OD2 56.3 REMARK 620 3 DDZ A 57 OG2 144.1 87.8 REMARK 620 4 ASP A 324 OD2 102.0 87.7 72.1 REMARK 620 5 HIS A 325 NE2 89.1 143.4 125.2 88.4 REMARK 620 6 SV7 A 601 OAA 99.8 100.2 87.2 157.6 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 482 OD1 REMARK 620 2 GLN A 485 OE1 85.4 REMARK 620 3 HOH A1087 O 95.1 93.9 REMARK 620 4 HOH A1212 O 165.7 86.9 97.4 REMARK 620 5 HOH A1218 O 87.8 95.2 170.7 80.9 REMARK 620 6 HOH A1230 O 87.5 172.2 83.4 100.7 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1001 O REMARK 620 2 HOH A1060 O 174.0 REMARK 620 3 HOH A1119 O 88.4 96.0 REMARK 620 4 HOH A1149 O 85.2 89.9 169.6 REMARK 620 5 HOH A1335 O 86.6 89.5 86.8 84.7 REMARK 620 6 HOH A1361 O 99.6 84.5 90.1 99.1 172.9 REMARK 620 N 1 2 3 4 5 DBREF 9GVE A 1 514 UNP Q1M964 RLPMH_RHIJ3 1 514 SEQADV 9GVE MET A -28 UNP Q1M964 INITIATING METHIONINE SEQADV 9GVE ALA A -27 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -26 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE TRP A -25 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -24 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE HIS A -23 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE PRO A -22 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE GLN A -21 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE PHE A -20 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE GLU A -19 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE LYS A -18 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE GLY A -17 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE ALA A -16 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE GLU A -15 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE THR A -14 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE ALA A -13 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE VAL A -12 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE PRO A -11 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE ASN A -10 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -9 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -8 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -7 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE VAL A -6 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE PRO A -5 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE GLY A -4 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE ASP A -3 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE PRO A -2 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A -1 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE SER A 0 UNP Q1M964 EXPRESSION TAG SEQADV 9GVE DDZ A 57 UNP Q1M964 CYS 57 CONFLICT SEQRES 1 A 543 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 543 GLU THR ALA VAL PRO ASN SER SER SER VAL PRO GLY ASP SEQRES 3 A 543 PRO SER SER MET ARG LYS LYS ASN VAL LEU LEU ILE VAL SEQRES 4 A 543 VAL ASP GLN TRP ARG ALA ASP PHE VAL PRO HIS VAL LEU SEQRES 5 A 543 ARG ALA ASP GLY LYS ILE ASP PHE LEU LYS THR PRO ASN SEQRES 6 A 543 LEU ASP ARG LEU CYS ARG GLU GLY VAL THR PHE ARG ASN SEQRES 7 A 543 HIS VAL THR THR CYS VAL PRO DDZ GLY PRO ALA ARG ALA SEQRES 8 A 543 SER LEU LEU THR GLY LEU TYR LEU MET ASN HIS ARG ALA SEQRES 9 A 543 VAL GLN ASN THR VAL PRO LEU ASP GLN ARG HIS LEU ASN SEQRES 10 A 543 LEU GLY LYS ALA LEU ARG GLY VAL GLY TYR ASP PRO ALA SEQRES 11 A 543 LEU ILE GLY TYR THR THR THR VAL PRO ASP PRO ARG THR SEQRES 12 A 543 THR SER PRO ASN ASP PRO ARG PHE ARG VAL LEU GLY ASP SEQRES 13 A 543 LEU MET ASP GLY PHE HIS PRO VAL GLY ALA PHE GLU PRO SEQRES 14 A 543 ASN MET GLU GLY TYR PHE GLY TRP VAL ALA GLN ASN GLY SEQRES 15 A 543 PHE ASP LEU PRO GLU HIS ARG PRO ASP ILE TRP LEU PRO SEQRES 16 A 543 GLU GLY GLU ASP ALA VAL ALA GLY ALA THR ASP ARG PRO SEQRES 17 A 543 SER ARG ILE PRO LYS GLU PHE SER ASP SER THR PHE PHE SEQRES 18 A 543 THR GLU ARG ALA LEU THR TYR LEU LYS GLY ARG ASP GLY SEQRES 19 A 543 LYS PRO PHE PHE LEU HIS LEU GLY TYR TYR ARG PRO HIS SEQRES 20 A 543 PRO PRO PHE VAL ALA SER ALA PRO TYR HIS ALA MET TYR SEQRES 21 A 543 ARG PRO GLU ASP MET PRO ALA PRO ILE ARG ALA ALA ASN SEQRES 22 A 543 PRO ASP ILE GLU ALA ALA GLN HIS PRO LEU MET LYS PHE SEQRES 23 A 543 TYR VAL ASP SER ILE ARG ARG GLY SER PHE PHE GLN GLY SEQRES 24 A 543 ALA GLU GLY SER GLY ALA THR LEU ASP GLU ALA GLU LEU SEQRES 25 A 543 ARG GLN MET ARG ALA THR TYR CYS GLY LEU ILE THR GLU SEQRES 26 A 543 VAL ASP ASP CYS LEU GLY ARG VAL PHE SER TYR LEU ASP SEQRES 27 A 543 GLU THR GLY GLN TRP ASP ASP THR LEU ILE ILE PHE THR SEQRES 28 A 543 SER ASP HIS GLY GLU GLN LEU GLY ASP HIS HIS LEU LEU SEQRES 29 A 543 GLY LYS ILE GLY TYR ASN ASP PRO SER PHE ARG ILE PRO SEQRES 30 A 543 LEU VAL ILE LYS ASP ALA GLY GLU ASN ALA ARG ALA GLY SEQRES 31 A 543 ALA ILE GLU SER GLY PHE THR GLU SER ILE ASP VAL MET SEQRES 32 A 543 PRO THR ILE LEU ASP TRP LEU GLY GLY LYS ILE PRO HIS SEQRES 33 A 543 ALA CYS ASP GLY LEU SER LEU LEU PRO PHE LEU SER GLU SEQRES 34 A 543 GLY ARG PRO GLN ASP TRP ARG THR GLU LEU HIS TYR GLU SEQRES 35 A 543 TYR ASP PHE ARG ASP VAL TYR TYR SER GLU PRO GLN SER SEQRES 36 A 543 PHE LEU GLY LEU GLY MET ASN ASP CYS SER LEU CYS VAL SEQRES 37 A 543 ILE GLN ASP GLU ARG TYR LYS TYR VAL HIS PHE ALA ALA SEQRES 38 A 543 LEU PRO PRO LEU PHE PHE ASP LEU ARG HIS ASP PRO ASN SEQRES 39 A 543 GLU PHE THR ASN LEU ALA ASP ASP PRO ALA TYR ALA ALA SEQRES 40 A 543 LEU VAL ARG ASP TYR ALA GLN LYS ALA LEU SER TRP ARG SEQRES 41 A 543 LEU LYS HIS ALA ASP ARG THR LEU THR HIS TYR ARG SER SEQRES 42 A 543 GLY PRO GLU GLY LEU SER GLU ARG SER HIS HET DDZ A 57 7 HET MN A 600 1 HET SV7 A 601 10 HET ACT A 602 4 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HETNAM DDZ 3,3-DIHYDROXY L-ALANINE HETNAM MN MANGANESE (II) ION HETNAM SV7 PHENYLPHOSPHONIC ACID HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETSYN DDZ 3-HYDROXY-L-SERINE FORMUL 1 DDZ C3 H7 N O4 FORMUL 2 MN MN 2+ FORMUL 3 SV7 C6 H7 O3 P FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 NA 3(NA 1+) FORMUL 8 HOH *678(H2 O) HELIX 1 AA1 VAL A 19 ASP A 26 1 8 HELIX 2 AA2 THR A 34 GLY A 44 1 11 HELIX 3 AA3 PRO A 56 GLY A 67 1 12 HELIX 4 AA4 TYR A 69 ARG A 74 1 6 HELIX 5 AA5 ASN A 88 VAL A 96 1 9 HELIX 6 AA6 ASP A 111 THR A 115 5 5 HELIX 7 AA7 ASP A 119 VAL A 124 5 6 HELIX 8 AA8 GLU A 139 ASN A 141 5 3 HELIX 9 AA9 MET A 142 ASN A 152 1 11 HELIX 10 AB1 HIS A 159 LEU A 165 5 7 HELIX 11 AB2 PRO A 183 PHE A 186 5 4 HELIX 12 AB3 SER A 187 ASP A 204 1 18 HELIX 13 AB4 PRO A 226 MET A 230 5 5 HELIX 14 AB5 ARG A 232 MET A 236 5 5 HELIX 15 AB6 ASN A 244 ALA A 250 1 7 HELIX 16 AB7 HIS A 252 ILE A 262 1 11 HELIX 17 AB8 ARG A 263 PHE A 267 5 5 HELIX 18 AB9 SER A 274 LEU A 278 5 5 HELIX 19 AC1 ASP A 279 THR A 311 1 33 HELIX 20 AC2 GLN A 313 ASP A 315 5 3 HELIX 21 AC3 GLY A 330 LEU A 334 5 5 HELIX 22 AC4 ASN A 341 ARG A 346 1 6 HELIX 23 AC5 ASP A 372 LEU A 381 1 10 HELIX 24 AC6 LEU A 394 SER A 399 1 6 HELIX 25 AC7 PRO A 424 GLY A 429 1 6 HELIX 26 AC8 GLY A 431 ASP A 434 5 4 HELIX 27 AC9 ASP A 473 ALA A 475 5 3 HELIX 28 AD1 TYR A 476 HIS A 494 1 19 SHEET 1 AA1 8 HIS A 133 ALA A 137 0 SHEET 2 AA1 8 PRO A 100 GLY A 104 1 N PRO A 100 O HIS A 133 SHEET 3 AA1 8 PHE A 209 GLY A 213 1 O HIS A 211 N ILE A 103 SHEET 4 AA1 8 ASN A 5 VAL A 11 1 N LEU A 8 O LEU A 212 SHEET 5 AA1 8 THR A 317 SER A 323 1 O ILE A 320 N ILE A 9 SHEET 6 AA1 8 LEU A 349 LYS A 352 -1 O LYS A 352 N ILE A 319 SHEET 7 AA1 8 VAL A 45 PHE A 47 -1 N PHE A 47 O LEU A 349 SHEET 8 AA1 8 ILE A 363 GLU A 364 1 O GLU A 364 N THR A 46 SHEET 1 AA2 2 HIS A 50 VAL A 51 0 SHEET 2 AA2 2 THR A 368 GLU A 369 1 O THR A 368 N VAL A 51 SHEET 1 AA3 4 LEU A 410 ASP A 415 0 SHEET 2 AA3 4 SER A 436 GLN A 441 -1 O VAL A 439 N TYR A 412 SHEET 3 AA3 4 TYR A 445 PHE A 450 -1 O TYR A 447 N ILE A 440 SHEET 4 AA3 4 LEU A 456 ASP A 459 -1 O LEU A 456 N VAL A 448 SHEET 1 AA4 2 TYR A 502 ARG A 503 0 SHEET 2 AA4 2 SER A 510 GLU A 511 -1 O SER A 510 N ARG A 503 LINK C PRO A 56 N DDZ A 57 1555 1555 1.34 LINK C DDZ A 57 N GLY A 58 1555 1555 1.33 LINK OD1 ASP A 12 MN MN A 600 1555 1555 2.32 LINK OD2 ASP A 12 MN MN A 600 1555 1555 2.32 LINK OG2 DDZ A 57 MN MN A 600 1555 1555 2.10 LINK OD2 ASP A 324 MN MN A 600 1555 1555 2.07 LINK NE2 HIS A 325 MN MN A 600 1555 1555 2.25 LINK OD1 ASP A 482 NA NA A 604 1555 1555 2.79 LINK OE1 GLN A 485 NA NA A 604 1555 1555 2.50 LINK MN MN A 600 OAA SV7 A 601 1555 1555 2.08 LINK NA NA A 603 O HOH A1001 1555 1555 2.38 LINK NA NA A 603 O HOH A1060 1555 8555 2.63 LINK NA NA A 603 O HOH A1119 1555 1555 2.34 LINK NA NA A 603 O HOH A1149 1555 8555 2.52 LINK NA NA A 603 O HOH A1335 1555 1555 2.47 LINK NA NA A 603 O HOH A1361 1555 1555 2.43 LINK NA NA A 604 O HOH A1087 1555 1555 2.68 LINK NA NA A 604 O HOH A1212 1555 1555 2.60 LINK NA NA A 604 O HOH A1218 1555 1555 2.34 LINK NA NA A 604 O HOH A1230 1555 1555 2.44 CISPEP 1 VAL A 55 PRO A 56 0 0.30 CISPEP 2 ARG A 216 PRO A 217 0 3.55 CISPEP 3 PRO A 219 PRO A 220 0 6.96 CISPEP 4 ALA A 225 PRO A 226 0 1.17 CRYST1 60.136 96.473 179.171 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016629 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005581 0.00000 CONECT 79 4093 CONECT 80 4093 CONECT 442 447 CONECT 447 442 448 CONECT 448 447 449 453 CONECT 449 448 450 454 CONECT 450 449 CONECT 451 453 CONECT 452 453 4093 CONECT 453 448 451 452 CONECT 454 449 CONECT 2582 4093 CONECT 2592 4093 CONECT 3833 4109 CONECT 3859 4109 CONECT 4093 79 80 452 2582 CONECT 4093 2592 4094 CONECT 4094 4093 4095 CONECT 4095 4094 4096 4097 4098 CONECT 4096 4095 CONECT 4097 4095 CONECT 4098 4095 4099 4103 CONECT 4099 4098 4100 CONECT 4100 4099 4101 CONECT 4101 4100 4102 CONECT 4102 4101 4103 CONECT 4103 4098 4102 CONECT 4104 4105 4106 4107 CONECT 4105 4104 CONECT 4106 4104 CONECT 4107 4104 CONECT 4108 4411 4529 4745 4771 CONECT 4109 3833 3859 4497 4622 CONECT 4109 4628 4640 CONECT 4411 4108 CONECT 4497 4109 CONECT 4529 4108 CONECT 4622 4109 CONECT 4628 4109 CONECT 4640 4109 CONECT 4745 4108 CONECT 4771 4108 MASTER 457 0 7 28 16 0 0 6 4747 1 42 42 END