HEADER EXOCYTOSIS 25-SEP-24 9GVU TITLE HUMAN RAB27A IN COMPLEX WITH CYCLIC PEPTIDE IMP-2660 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-27A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RAB-27,GTP-BINDING PROTEIN RAM; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: MISSING HYPERVARIABLE C-TERMINAL (193-221); COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIC PEPTIDE IMP-2660; COMPND 11 CHAIN: D, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB27A, RAB27; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS MACROCYCLIC PEPTIDES, MRNA DISPLAY, RAB27A, PPI INHIBITOR, EXOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.PETRACCA,M.TERSA,E.DE VITA,M.R.MORGAN,E.COTA,E.W.TATE REVDAT 1 15-OCT-25 9GVU 0 JRNL AUTH R.PETRACCA,M.TERSA,E.DE VITA,M.R.MORGAN,E.COTA,E.W.TATE JRNL TITL A POTENT MACROCYCLIC PEPTIDE MODULATOR OF RAB27A IDENTIFIED JRNL TITL 2 BY RAPID SCREENING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.9700 - 4.5200 1.00 2839 163 0.1853 0.2054 REMARK 3 2 4.5200 - 3.5900 1.00 2691 172 0.1462 0.1991 REMARK 3 3 3.5900 - 3.1300 1.00 2691 145 0.1634 0.2107 REMARK 3 4 3.1300 - 2.8500 1.00 2681 130 0.1893 0.2352 REMARK 3 5 2.8500 - 2.6400 1.00 2673 143 0.2033 0.2933 REMARK 3 6 2.6400 - 2.4900 1.00 2644 139 0.2208 0.2888 REMARK 3 7 2.4900 - 2.3600 1.00 2647 136 0.2282 0.3093 REMARK 3 8 2.3600 - 2.2600 1.00 2643 135 0.2373 0.3000 REMARK 3 9 2.2600 - 2.1700 1.00 2649 125 0.2612 0.3363 REMARK 3 10 2.1700 - 2.1000 0.97 2544 117 0.2705 0.3316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3253 REMARK 3 ANGLE : 1.098 4394 REMARK 3 CHIRALITY : 0.048 449 REMARK 3 PLANARITY : 0.004 542 REMARK 3 DIHEDRAL : 18.205 704 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9GVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1292141620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 56.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M NH4SO4, 0.1 MES, PH 6.0, 15% REMARK 280 PEG 4K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.17850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.82900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.35700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.82900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.17850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.35700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ASN B 35 CG OD1 ND2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 XAK D 12 C7 O8 N9 REMARK 470 XAK F 12 O8 N9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 118 NH1 ARG D 5 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU D 1 C VAL D 2 N 0.171 REMARK 500 VAL D 2 C GLY D 3 N 0.167 REMARK 500 GLY D 3 C SER D 4 N 0.145 REMARK 500 ARG D 5 NE ARG D 5 CZ 0.176 REMARK 500 HIS D 6 CG HIS D 6 CD2 0.066 REMARK 500 HIS D 6 C THR D 7 N 0.162 REMARK 500 THR D 7 C ILE D 8 N 0.151 REMARK 500 ILE D 8 C ALA D 9 N 0.182 REMARK 500 ALA D 9 C ILE D 10 N 0.167 REMARK 500 ASN D 11 CG ASN D 11 ND2 0.160 REMARK 500 XAK D 12 C DTY D 13 N 0.154 REMARK 500 DTY D 13 C ARG D 14 N 0.155 REMARK 500 ARG D 14 NE ARG D 14 CZ 0.191 REMARK 500 LEU F 1 C VAL F 2 N 0.168 REMARK 500 VAL F 2 C GLY F 3 N 0.158 REMARK 500 GLY F 3 C SER F 4 N 0.157 REMARK 500 ARG F 5 NE ARG F 5 CZ 0.170 REMARK 500 HIS F 6 C THR F 7 N 0.155 REMARK 500 THR F 7 C ILE F 8 N 0.155 REMARK 500 ILE F 8 C ALA F 9 N 0.178 REMARK 500 ALA F 9 C ILE F 10 N 0.170 REMARK 500 ASN F 11 CG ASN F 11 ND2 0.163 REMARK 500 XAK F 12 C DTY F 13 N 0.159 REMARK 500 DTY F 13 C ARG F 14 N 0.159 REMARK 500 ARG F 14 NE ARG F 14 CZ 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 137 72.26 -100.56 REMARK 500 ASP B 59 -8.69 66.44 REMARK 500 ARG B 80 -139.15 52.34 REMARK 500 ARG B 82 -58.49 -132.98 REMARK 500 LEU B 137 62.83 -101.77 REMARK 500 ARG B 187 88.70 56.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 5 TYR A 6 -142.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 384 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 385 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 386 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 387 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 388 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B 370 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 371 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 THR A 41 OG1 89.3 REMARK 620 3 GNP A 209 O2G 165.0 90.2 REMARK 620 4 GNP A 209 O1B 84.5 161.3 91.2 REMARK 620 5 HOH A 307 O 86.9 102.0 107.9 95.3 REMARK 620 6 HOH A 314 O 80.6 79.1 84.6 82.5 167.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 23 OG1 REMARK 620 2 THR B 41 OG1 85.3 REMARK 620 3 GNP B 207 O2G 167.2 97.0 REMARK 620 4 GNP B 207 O1B 90.3 175.0 86.9 REMARK 620 5 HOH B 305 O 97.1 96.3 95.2 86.4 REMARK 620 6 HOH B 323 O 82.5 91.5 84.9 85.8 172.1 REMARK 620 N 1 2 3 4 5 DBREF 9GVU A 5 188 UNP P51159 RB27A_HUMAN 5 188 DBREF 9GVU B 5 188 UNP P51159 RB27A_HUMAN 5 188 DBREF 9GVU D 1 14 PDB 9GVU 9GVU 1 14 DBREF 9GVU F 1 14 PDB 9GVU 9GVU 1 14 SEQADV 9GVU LEU A 78 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 9GVU SER A 123 UNP P51159 CYS 123 ENGINEERED MUTATION SEQADV 9GVU SER A 188 UNP P51159 CYS 188 ENGINEERED MUTATION SEQADV 9GVU LEU B 78 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 9GVU SER B 123 UNP P51159 CYS 123 ENGINEERED MUTATION SEQADV 9GVU SER B 188 UNP P51159 CYS 188 ENGINEERED MUTATION SEQRES 1 A 184 ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA LEU GLY ASP SEQRES 2 A 184 SER GLY VAL GLY LYS THR SER VAL LEU TYR GLN TYR THR SEQRES 3 A 184 ASP GLY LYS PHE ASN SER LYS PHE ILE THR THR VAL GLY SEQRES 4 A 184 ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR ARG ALA SER SEQRES 5 A 184 GLY PRO ASP GLY ALA THR GLY ARG GLY GLN ARG ILE HIS SEQRES 6 A 184 LEU GLN LEU TRP ASP THR ALA GLY LEU GLU ARG PHE ARG SEQRES 7 A 184 SER LEU THR THR ALA PHE PHE ARG ASP ALA MET GLY PHE SEQRES 8 A 184 LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SER PHE LEU SEQRES 9 A 184 ASN VAL ARG ASN TRP ILE SER GLN LEU GLN MET HIS ALA SEQRES 10 A 184 TYR SER GLU ASN PRO ASP ILE VAL LEU CYS GLY ASN LYS SEQRES 11 A 184 SER ASP LEU GLU ASP GLN ARG VAL VAL LYS GLU GLU GLU SEQRES 12 A 184 ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE PRO TYR PHE SEQRES 13 A 184 GLU THR SER ALA ALA ASN GLY THR ASN ILE SER GLN ALA SEQRES 14 A 184 ILE GLU MET LEU LEU ASP LEU ILE MET LYS ARG MET GLU SEQRES 15 A 184 ARG SER SEQRES 1 B 184 ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA LEU GLY ASP SEQRES 2 B 184 SER GLY VAL GLY LYS THR SER VAL LEU TYR GLN TYR THR SEQRES 3 B 184 ASP GLY LYS PHE ASN SER LYS PHE ILE THR THR VAL GLY SEQRES 4 B 184 ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR ARG ALA SER SEQRES 5 B 184 GLY PRO ASP GLY ALA THR GLY ARG GLY GLN ARG ILE HIS SEQRES 6 B 184 LEU GLN LEU TRP ASP THR ALA GLY LEU GLU ARG PHE ARG SEQRES 7 B 184 SER LEU THR THR ALA PHE PHE ARG ASP ALA MET GLY PHE SEQRES 8 B 184 LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SER PHE LEU SEQRES 9 B 184 ASN VAL ARG ASN TRP ILE SER GLN LEU GLN MET HIS ALA SEQRES 10 B 184 TYR SER GLU ASN PRO ASP ILE VAL LEU CYS GLY ASN LYS SEQRES 11 B 184 SER ASP LEU GLU ASP GLN ARG VAL VAL LYS GLU GLU GLU SEQRES 12 B 184 ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE PRO TYR PHE SEQRES 13 B 184 GLU THR SER ALA ALA ASN GLY THR ASN ILE SER GLN ALA SEQRES 14 B 184 ILE GLU MET LEU LEU ASP LEU ILE MET LYS ARG MET GLU SEQRES 15 B 184 ARG SER SEQRES 1 D 14 LEU VAL GLY SER ARG HIS THR ILE ALA ILE ASN XAK DTY SEQRES 2 D 14 ARG SEQRES 1 F 14 LEU VAL GLY SER ARG HIS THR ILE ALA ILE ASN XAK DTY SEQRES 2 F 14 ARG HET XAK D 12 11 HET DTY D 13 12 HET XAK F 12 12 HET DTY F 13 12 HET MG A 201 1 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET GOL A 208 6 HET GNP A 209 32 HET MG B 201 1 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HET GNP B 207 32 HET GOL D 101 6 HET GOL F 101 6 HETNAM XAK S-(CARBOXYMETHYL)-L-CYSTEINYLGLYCINAMIDE HETNAM DTY D-TYROSINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 XAK 2(C7 H13 N3 O4 S) FORMUL 3 DTY 2(C9 H11 N O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 GOL 14(C3 H8 O3) FORMUL 13 GNP 2(C10 H17 N6 O13 P3) FORMUL 23 HOH *175(H2 O) HELIX 1 AA1 GLY A 21 GLY A 32 1 12 HELIX 2 AA2 THR A 86 ASP A 91 1 6 HELIX 3 AA3 ASN A 103 ASN A 109 1 7 HELIX 4 AA4 ASN A 109 ALA A 121 1 13 HELIX 5 AA5 LYS A 144 GLY A 156 1 13 HELIX 6 AA6 ASN A 169 MET A 185 1 17 HELIX 7 AA7 GLY B 21 GLY B 32 1 12 HELIX 8 AA8 ARG B 82 THR B 86 5 5 HELIX 9 AA9 PHE B 88 ALA B 92 5 5 HELIX 10 AB1 ASN B 103 ASN B 109 1 7 HELIX 11 AB2 ASN B 109 ALA B 121 1 13 HELIX 12 AB3 LEU B 137 ARG B 141 5 5 HELIX 13 AB4 LYS B 144 GLY B 156 1 13 HELIX 14 AB5 ASN B 169 MET B 185 1 17 SHEET 1 AA1 6 ILE A 44 TYR A 53 0 SHEET 2 AA1 6 GLN A 66 THR A 75 -1 O ASP A 74 N ASP A 45 SHEET 3 AA1 6 TYR A 8 LEU A 15 1 N PHE A 12 O TRP A 73 SHEET 4 AA1 6 GLY A 94 ASP A 100 1 O LEU A 98 N LEU A 15 SHEET 5 AA1 6 ASP A 127 ASN A 133 1 O ASN A 133 N PHE A 99 SHEET 6 AA1 6 TYR A 159 GLU A 161 1 O PHE A 160 N GLY A 132 SHEET 1 AA2 6 ILE B 44 ARG B 54 0 SHEET 2 AA2 6 GLY B 65 THR B 75 -1 O ASP B 74 N ASP B 45 SHEET 3 AA2 6 TYR B 8 LEU B 15 1 N TYR B 8 O HIS B 69 SHEET 4 AA2 6 PHE B 95 ASP B 100 1 O LEU B 96 N LEU B 15 SHEET 5 AA2 6 ILE B 128 ASN B 133 1 O CYS B 131 N LEU B 97 SHEET 6 AA2 6 TYR B 159 GLU B 161 1 O PHE B 160 N GLY B 132 LINK N LEU D 1 C ARG D 14 1555 1555 1.51 LINK C ASN D 11 N XAK D 12 1555 1555 1.46 LINK C XAK D 12 N DTY D 13 1555 1555 1.49 LINK C DTY D 13 N ARG D 14 1555 1555 1.49 LINK N LEU F 1 C ARG F 14 1555 1555 1.52 LINK C ASN F 11 N XAK F 12 1555 1555 1.47 LINK C XAK F 12 N DTY F 13 1555 1555 1.50 LINK C DTY F 13 N ARG F 14 1555 1555 1.50 LINK OG1 THR A 23 MG MG A 201 1555 1555 2.01 LINK OG1 THR A 41 MG MG A 201 1555 1555 2.03 LINK MG MG A 201 O2G GNP A 209 1555 1555 2.00 LINK MG MG A 201 O1B GNP A 209 1555 1555 2.13 LINK MG MG A 201 O HOH A 307 1555 1555 2.03 LINK MG MG A 201 O HOH A 314 1555 1555 2.26 LINK OG1 THR B 23 MG MG B 201 1555 1555 2.07 LINK OG1 THR B 41 MG MG B 201 1555 1555 2.09 LINK MG MG B 201 O2G GNP B 207 1555 1555 2.03 LINK MG MG B 201 O1B GNP B 207 1555 1555 2.25 LINK MG MG B 201 O HOH B 305 1555 1555 2.08 LINK MG MG B 201 O HOH B 323 1555 1555 2.07 CRYST1 70.357 72.714 91.658 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010910 0.00000 CONECT 139 3068 CONECT 288 3068 CONECT 1579 3143 CONECT 1725 3143 CONECT 2833 2940 CONECT 2909 2920 CONECT 2915 2918 2919 2920 CONECT 2916 2923 CONECT 2917 2921 2925 CONECT 2918 2915 2923 2924 CONECT 2919 2915 2925 CONECT 2920 2909 2915 CONECT 2921 2917 2922 2926 CONECT 2922 2921 CONECT 2923 2916 2918 CONECT 2924 2918 CONECT 2925 2917 2919 CONECT 2926 2921 2927 CONECT 2927 2926 2928 2930 CONECT 2928 2927 2929 2938 CONECT 2929 2928 CONECT 2930 2927 2931 CONECT 2931 2930 2932 2933 CONECT 2932 2931 2934 CONECT 2933 2931 2935 CONECT 2934 2932 2936 CONECT 2935 2933 2936 CONECT 2936 2934 2935 2937 CONECT 2937 2936 CONECT 2938 2928 CONECT 2940 2833 CONECT 2950 3058 CONECT 3026 3038 CONECT 3032 3034 CONECT 3033 3036 3037 3038 CONECT 3034 3032 3041 CONECT 3035 3039 3043 CONECT 3036 3033 3041 3042 CONECT 3037 3033 3043 CONECT 3038 3026 3033 CONECT 3039 3035 3040 3044 CONECT 3040 3039 CONECT 3041 3034 3036 CONECT 3042 3036 CONECT 3043 3035 3037 CONECT 3044 3039 3045 CONECT 3045 3044 3046 3048 CONECT 3046 3045 3047 3056 CONECT 3047 3046 CONECT 3048 3045 3049 CONECT 3049 3048 3050 3051 CONECT 3050 3049 3052 CONECT 3051 3049 3053 CONECT 3052 3050 3054 CONECT 3053 3051 3054 CONECT 3054 3052 3053 3055 CONECT 3055 3054 CONECT 3056 3046 CONECT 3058 2950 CONECT 3068 139 288 3113 3117 CONECT 3068 3224 3231 CONECT 3069 3070 3071 CONECT 3070 3069 CONECT 3071 3069 3072 3073 CONECT 3072 3071 CONECT 3073 3071 3074 CONECT 3074 3073 CONECT 3075 3076 3077 CONECT 3076 3075 CONECT 3077 3075 3078 3079 CONECT 3078 3077 CONECT 3079 3077 3080 CONECT 3080 3079 CONECT 3081 3082 3083 CONECT 3082 3081 CONECT 3083 3081 3084 3085 CONECT 3084 3083 CONECT 3085 3083 3086 CONECT 3086 3085 CONECT 3087 3088 3089 CONECT 3088 3087 CONECT 3089 3087 3090 3091 CONECT 3090 3089 CONECT 3091 3089 3092 CONECT 3092 3091 CONECT 3093 3094 3095 CONECT 3094 3093 CONECT 3095 3093 3096 3097 CONECT 3096 3095 CONECT 3097 3095 3098 CONECT 3098 3097 CONECT 3099 3100 3101 CONECT 3100 3099 CONECT 3101 3099 3102 3103 CONECT 3102 3101 CONECT 3103 3101 3104 CONECT 3104 3103 CONECT 3105 3106 3107 CONECT 3106 3105 CONECT 3107 3105 3108 3109 CONECT 3108 3107 CONECT 3109 3107 3110 CONECT 3110 3109 CONECT 3111 3112 3113 3114 3115 CONECT 3112 3111 CONECT 3113 3068 3111 CONECT 3114 3111 CONECT 3115 3111 3116 CONECT 3116 3115 3117 3118 3119 CONECT 3117 3068 3116 CONECT 3118 3116 CONECT 3119 3116 3120 CONECT 3120 3119 3121 3122 3123 CONECT 3121 3120 CONECT 3122 3120 CONECT 3123 3120 3124 CONECT 3124 3123 3125 CONECT 3125 3124 3126 3127 CONECT 3126 3125 3131 CONECT 3127 3125 3128 3129 CONECT 3128 3127 CONECT 3129 3127 3130 3131 CONECT 3130 3129 CONECT 3131 3126 3129 3132 CONECT 3132 3131 3133 3142 CONECT 3133 3132 3134 CONECT 3134 3133 3135 CONECT 3135 3134 3136 3142 CONECT 3136 3135 3137 3138 CONECT 3137 3136 CONECT 3138 3136 3139 CONECT 3139 3138 3140 3141 CONECT 3140 3139 CONECT 3141 3139 3142 CONECT 3142 3132 3135 3141 CONECT 3143 1579 1725 3176 3180 CONECT 3143 3310 3328 CONECT 3144 3145 3146 CONECT 3145 3144 CONECT 3146 3144 3147 3148 CONECT 3147 3146 CONECT 3148 3146 3149 CONECT 3149 3148 CONECT 3150 3151 3152 CONECT 3151 3150 CONECT 3152 3150 3153 3154 CONECT 3153 3152 CONECT 3154 3152 3155 CONECT 3155 3154 CONECT 3156 3157 3158 CONECT 3157 3156 CONECT 3158 3156 3159 3160 CONECT 3159 3158 CONECT 3160 3158 3161 CONECT 3161 3160 CONECT 3162 3163 3164 CONECT 3163 3162 CONECT 3164 3162 3165 3166 CONECT 3165 3164 CONECT 3166 3164 3167 CONECT 3167 3166 CONECT 3168 3169 3170 CONECT 3169 3168 CONECT 3170 3168 3171 3172 CONECT 3171 3170 CONECT 3172 3170 3173 CONECT 3173 3172 CONECT 3174 3175 3176 3177 3178 CONECT 3175 3174 CONECT 3176 3143 3174 CONECT 3177 3174 CONECT 3178 3174 3179 CONECT 3179 3178 3180 3181 3182 CONECT 3180 3143 3179 CONECT 3181 3179 CONECT 3182 3179 3183 CONECT 3183 3182 3184 3185 3186 CONECT 3184 3183 CONECT 3185 3183 CONECT 3186 3183 3187 CONECT 3187 3186 3188 CONECT 3188 3187 3189 3190 CONECT 3189 3188 3194 CONECT 3190 3188 3191 3192 CONECT 3191 3190 CONECT 3192 3190 3193 3194 CONECT 3193 3192 CONECT 3194 3189 3192 3195 CONECT 3195 3194 3196 3205 CONECT 3196 3195 3197 CONECT 3197 3196 3198 CONECT 3198 3197 3199 3205 CONECT 3199 3198 3200 3201 CONECT 3200 3199 CONECT 3201 3199 3202 CONECT 3202 3201 3203 3204 CONECT 3203 3202 CONECT 3204 3202 3205 CONECT 3205 3195 3198 3204 CONECT 3206 3207 3208 CONECT 3207 3206 CONECT 3208 3206 3209 3210 CONECT 3209 3208 CONECT 3210 3208 3211 CONECT 3211 3210 CONECT 3212 3213 3214 CONECT 3213 3212 CONECT 3214 3212 3215 3216 CONECT 3215 3214 CONECT 3216 3214 3217 CONECT 3217 3216 CONECT 3224 3068 CONECT 3231 3068 CONECT 3310 3143 CONECT 3328 3143 MASTER 376 0 22 14 12 0 0 6 3379 4 215 34 END