HEADER VIRAL PROTEIN 07-OCT-24 9H01 OBSLTE 11-FEB-26 9H01 9TH6 TITLE NSP14 OF SARS-COV-2 IN COMPLEX WITH A CAMELID NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE-N7 METHYLTRANSFERASE NSP14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 14,NSP14,PROOFREADING EXORIBONUCLEASE COMPND 5 NSP14,EXON; COMPND 6 EC: 2.1.1.56,3.1.13.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: VHH ANTI-NSP14 OF SARS-COV-2; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 13 ORGANISM_TAXID: 9844; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C2566; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS COMPLEX, NUCLEASE, VHH, NSP, SARS-COV-2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.GAUFFRE,F.FERRON,B.CANARD REVDAT 2 11-FEB-26 9H01 1 OBSLTE REVDAT 1 29-OCT-25 9H01 0 JRNL AUTH P.GAUFFRE,A.GAUBERT,F.FERRON,B.CANARD JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF NSP14 FULL LENGTH FROM JRNL TITL 2 SARS-COV-2, STABILISED BY A NANOBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3794 REMARK 3 BIN FREE R VALUE : 0.4229 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.81080 REMARK 3 B22 (A**2) : -19.36090 REMARK 3 B33 (A**2) : 27.17160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.850 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.339 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.813 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.342 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4734 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6432 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1566 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 800 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4734 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 612 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3566 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9H01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.25 - 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC AIMELESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.533 REMARK 200 RESOLUTION RANGE LOW (A) : 51.521 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22,5-26,25% W/V PEG 3350, 0.1 M BIS REMARK 280 TRIS PROPANE, 0.2 M SODIUM FLUORIDE, PH 7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.76300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.08000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.41600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.08000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.76300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.41600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 LYS A 9 REMARK 465 ASP A 10 REMARK 465 CYS A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 VAL A 14 REMARK 465 ILE A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 HIS A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 96 REMARK 465 THR A 97 REMARK 465 ARG A 98 REMARK 465 GLU A 99 REMARK 465 ALA A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 ASP A 126 REMARK 465 THR A 127 REMARK 465 PRO A 128 REMARK 465 ASN A 129 REMARK 465 ASN A 130 REMARK 465 THR A 131 REMARK 465 ASP A 132 REMARK 465 PHE A 133 REMARK 465 SER A 134 REMARK 465 ARG A 135 REMARK 465 VAL A 136 REMARK 465 SER A 137 REMARK 465 ALA A 138 REMARK 465 LYS A 139 REMARK 465 PRO A 140 REMARK 465 PRO A 141 REMARK 465 PRO A 142 REMARK 465 GLY A 143 REMARK 465 ASP A 144 REMARK 465 GLN A 145 REMARK 465 PHE A 146 REMARK 465 LYS A 147 REMARK 465 HIS A 148 REMARK 465 LEU A 149 REMARK 465 ILE A 150 REMARK 465 PRO A 151 REMARK 465 LEU A 152 REMARK 465 MET A 153 REMARK 465 TYR A 154 REMARK 465 ARG A 525 REMARK 465 LEU A 526 REMARK 465 GLN A 527 REMARK 465 MET B 1 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 95 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 103 OG1 CG2 REMARK 470 ASN A 104 CG OD1 ND2 REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 292 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 292 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 53.69 39.82 REMARK 500 ASN A 63 173.40 -52.53 REMARK 500 TYR A 64 103.28 -46.76 REMARK 500 TRP A 186 67.19 -115.73 REMARK 500 THR A 250 -83.57 -84.87 REMARK 500 ASP A 291 101.59 54.37 REMARK 500 TRP A 292 -169.80 -116.12 REMARK 500 ASP A 301 36.70 -96.89 REMARK 500 ALA A 353 115.48 -166.64 REMARK 500 CYS A 356 -35.24 -36.14 REMARK 500 SER A 357 -69.77 69.65 REMARK 500 LYS A 359 122.16 7.25 REMARK 500 ALA A 371 81.78 32.61 REMARK 500 SER A 374 75.93 58.15 REMARK 500 PHE A 377 -174.84 -69.11 REMARK 500 THR A 378 -42.49 75.18 REMARK 500 ASN A 422 -80.26 -106.50 REMARK 500 VAL A 459 102.85 -42.28 REMARK 500 SER A 461 81.93 50.38 REMARK 500 CYS A 473 75.50 -103.47 REMARK 500 THR B 32 4.73 -67.73 REMARK 500 ARG B 47 99.12 -69.27 REMARK 500 ARG B 103 -108.59 -110.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 207 SG REMARK 620 2 CYS A 210 SG 115.8 REMARK 620 3 CYS A 226 SG 110.8 93.6 REMARK 620 4 HIS A 229 ND1 112.6 118.9 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 261 SG REMARK 620 2 HIS A 264 ND1 92.7 REMARK 620 3 CYS A 279 SG 115.3 123.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 452 SG REMARK 620 2 CYS A 477 SG 106.7 REMARK 620 3 CYS A 484 SG 133.4 111.0 REMARK 620 4 HIS A 487 ND1 105.6 97.6 95.6 REMARK 620 N 1 2 3 DBREF 9H01 A 1 527 UNP P0DTD1 R1AB_SARS2 5926 6452 DBREF 9H01 B 1 132 PDB 9H01 9H01 1 132 SEQADV 9H01 MET A -19 UNP P0DTD1 INITIATING METHIONINE SEQADV 9H01 GLY A -18 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 GLY A -17 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 SER A -16 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -15 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -14 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -13 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -12 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -11 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -10 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -9 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 HIS A -8 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 GLY A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 SER A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 GLU A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 ASN A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 LEU A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 TYR A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 PHE A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 9H01 GLN A 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 547 MET GLY GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLY SEQRES 2 A 547 SER GLU ASN LEU TYR PHE GLN ALA GLU ASN VAL THR GLY SEQRES 3 A 547 LEU PHE LYS ASP CYS SER LYS VAL ILE THR GLY LEU HIS SEQRES 4 A 547 PRO THR GLN ALA PRO THR HIS LEU SER VAL ASP THR LYS SEQRES 5 A 547 PHE LYS THR GLU GLY LEU CYS VAL ASP ILE PRO GLY ILE SEQRES 6 A 547 PRO LYS ASP MET THR TYR ARG ARG LEU ILE SER MET MET SEQRES 7 A 547 GLY PHE LYS MET ASN TYR GLN VAL ASN GLY TYR PRO ASN SEQRES 8 A 547 MET PHE ILE THR ARG GLU GLU ALA ILE ARG HIS VAL ARG SEQRES 9 A 547 ALA TRP ILE GLY PHE ASP VAL GLU GLY CYS HIS ALA THR SEQRES 10 A 547 ARG GLU ALA VAL GLY THR ASN LEU PRO LEU GLN LEU GLY SEQRES 11 A 547 PHE SER THR GLY VAL ASN LEU VAL ALA VAL PRO THR GLY SEQRES 12 A 547 TYR VAL ASP THR PRO ASN ASN THR ASP PHE SER ARG VAL SEQRES 13 A 547 SER ALA LYS PRO PRO PRO GLY ASP GLN PHE LYS HIS LEU SEQRES 14 A 547 ILE PRO LEU MET TYR LYS GLY LEU PRO TRP ASN VAL VAL SEQRES 15 A 547 ARG ILE LYS ILE VAL GLN MET LEU SER ASP THR LEU LYS SEQRES 16 A 547 ASN LEU SER ASP ARG VAL VAL PHE VAL LEU TRP ALA HIS SEQRES 17 A 547 GLY PHE GLU LEU THR SER MET LYS TYR PHE VAL LYS ILE SEQRES 18 A 547 GLY PRO GLU ARG THR CYS CYS LEU CYS ASP ARG ARG ALA SEQRES 19 A 547 THR CYS PHE SER THR ALA SER ASP THR TYR ALA CYS TRP SEQRES 20 A 547 HIS HIS SER ILE GLY PHE ASP TYR VAL TYR ASN PRO PHE SEQRES 21 A 547 MET ILE ASP VAL GLN GLN TRP GLY PHE THR GLY ASN LEU SEQRES 22 A 547 GLN SER ASN HIS ASP LEU TYR CYS GLN VAL HIS GLY ASN SEQRES 23 A 547 ALA HIS VAL ALA SER CYS ASP ALA ILE MET THR ARG CYS SEQRES 24 A 547 LEU ALA VAL HIS GLU CYS PHE VAL LYS ARG VAL ASP TRP SEQRES 25 A 547 THR ILE GLU TYR PRO ILE ILE GLY ASP GLU LEU LYS ILE SEQRES 26 A 547 ASN ALA ALA CYS ARG LYS VAL GLN HIS MET VAL VAL LYS SEQRES 27 A 547 ALA ALA LEU LEU ALA ASP LYS PHE PRO VAL LEU HIS ASP SEQRES 28 A 547 ILE GLY ASN PRO LYS ALA ILE LYS CYS VAL PRO GLN ALA SEQRES 29 A 547 ASP VAL GLU TRP LYS PHE TYR ASP ALA GLN PRO CYS SER SEQRES 30 A 547 ASP LYS ALA TYR LYS ILE GLU GLU LEU PHE TYR SER TYR SEQRES 31 A 547 ALA THR HIS SER ASP LYS PHE THR ASP GLY VAL CYS LEU SEQRES 32 A 547 PHE TRP ASN CYS ASN VAL ASP ARG TYR PRO ALA ASN SER SEQRES 33 A 547 ILE VAL CYS ARG PHE ASP THR ARG VAL LEU SER ASN LEU SEQRES 34 A 547 ASN LEU PRO GLY CYS ASP GLY GLY SER LEU TYR VAL ASN SEQRES 35 A 547 LYS HIS ALA PHE HIS THR PRO ALA PHE ASP LYS SER ALA SEQRES 36 A 547 PHE VAL ASN LEU LYS GLN LEU PRO PHE PHE TYR TYR SER SEQRES 37 A 547 ASP SER PRO CYS GLU SER HIS GLY LYS GLN VAL VAL SER SEQRES 38 A 547 ASP ILE ASP TYR VAL PRO LEU LYS SER ALA THR CYS ILE SEQRES 39 A 547 THR ARG CYS ASN LEU GLY GLY ALA VAL CYS ARG HIS HIS SEQRES 40 A 547 ALA ASN GLU TYR ARG LEU TYR LEU ASP ALA TYR ASN MET SEQRES 41 A 547 MET ILE SER ALA GLY PHE SER LEU TRP VAL TYR LYS GLN SEQRES 42 A 547 PHE ASP THR TYR ASN LEU TRP ASN THR PHE THR ARG LEU SEQRES 43 A 547 GLN SEQRES 1 B 132 MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 B 132 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 B 132 SER GLY ARG ALA PHE THR MET TYR ALA MET GLY TRP PHE SEQRES 4 B 132 ARG GLN ALA PRO GLY GLU GLU ARG ALA TYR ILE ALA GLY SEQRES 5 B 132 ILE THR TRP ASN GLY LEU SER THR TYR TYR ALA ASP SER SEQRES 6 B 132 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 B 132 ASN THR VAL TYR LEU GLN MET GLY SER LEU LYS PRO GLU SEQRES 8 B 132 ASP THR ALA VAL TYR TYR CYS ALA ALA THR ARG ARG SER SEQRES 9 B 132 LEU THR THR ALA THR THR ASP ALA ASP ALA TRP GLY GLN SEQRES 10 B 132 GLY THR GLN VAL THR VAL SER SER GLY HIS HIS HIS HIS SEQRES 11 B 132 HIS HIS HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 HOH *54(H2 O) HELIX 1 AA1 THR A 50 GLY A 59 1 10 HELIX 2 AA2 THR A 75 HIS A 82 1 8 HELIX 3 AA3 TRP A 159 LYS A 175 1 17 HELIX 4 AA4 GLY A 189 MET A 195 1 7 HELIX 5 AA5 CYS A 226 SER A 230 5 5 HELIX 6 AA6 GLN A 245 GLY A 248 5 4 HELIX 7 AA7 ASN A 252 ASP A 258 1 7 HELIX 8 AA8 VAL A 269 PHE A 286 1 18 HELIX 9 AA9 ASP A 301 LYS A 325 1 25 HELIX 10 AB1 LYS A 362 SER A 369 1 8 HELIX 11 AB2 ASP A 432 VAL A 437 5 6 HELIX 12 AB3 THR A 475 GLY A 480 1 6 HELIX 13 AB4 ARG A 485 GLY A 505 1 21 HELIX 14 AB5 THR A 516 ASN A 521 1 6 HELIX 15 AB6 ALA B 30 TYR B 34 5 5 HELIX 16 AB7 LYS B 89 THR B 93 5 5 HELIX 17 AB8 SER B 104 THR B 106 5 3 HELIX 18 AB9 THR B 107 ALA B 112 1 6 SHEET 1 AA1 6 LEU A 157 PRO A 158 0 SHEET 2 AA1 6 ASN A 116 VAL A 120 1 N VAL A 118 O LEU A 157 SHEET 3 AA1 6 LEU A 107 PHE A 111 -1 N LEU A 107 O ALA A 119 SHEET 4 AA1 6 TRP A 86 GLY A 93 -1 N GLU A 92 O GLN A 108 SHEET 5 AA1 6 VAL A 182 LEU A 185 1 O VAL A 184 N PHE A 89 SHEET 6 AA1 6 PHE A 240 ASP A 243 1 O ILE A 242 N LEU A 185 SHEET 1 AA2 4 VAL A 199 LYS A 200 0 SHEET 2 AA2 4 TYR A 235 TYR A 237 1 O VAL A 236 N LYS A 200 SHEET 3 AA2 4 CYS A 216 SER A 218 -1 N PHE A 217 O TYR A 235 SHEET 4 AA2 4 THR A 223 ALA A 225 -1 O THR A 223 N SER A 218 SHEET 1 AA3 6 GLU A 347 TYR A 351 0 SHEET 2 AA3 6 VAL A 328 ILE A 332 1 N LEU A 329 O GLU A 347 SHEET 3 AA3 6 VAL A 381 TRP A 385 1 O LEU A 383 N HIS A 330 SHEET 4 AA3 6 SER A 396 PHE A 401 1 O ILE A 397 N PHE A 384 SHEET 5 AA3 6 PHE A 506 TYR A 511 -1 O TRP A 509 N VAL A 398 SHEET 6 AA3 6 LEU A 439 GLN A 441 -1 N LYS A 440 O VAL A 510 SHEET 1 AA4 3 ASN A 410 PRO A 412 0 SHEET 2 AA4 3 SER A 418 VAL A 421 -1 O LEU A 419 N LEU A 411 SHEET 3 AA4 3 ALA A 425 THR A 428 -1 O THR A 428 N SER A 418 SHEET 1 AA5 2 TYR A 446 TYR A 447 0 SHEET 2 AA5 2 CYS A 473 ILE A 474 1 O ILE A 474 N TYR A 446 SHEET 1 AA6 2 TYR A 465 VAL A 466 0 SHEET 2 AA6 2 VAL A 483 CYS A 484 -1 O VAL A 483 N VAL A 466 SHEET 1 AA7 4 VAL B 4 SER B 9 0 SHEET 2 AA7 4 LEU B 20 GLY B 28 -1 O ALA B 25 N VAL B 7 SHEET 3 AA7 4 THR B 80 MET B 85 -1 O MET B 85 N LEU B 20 SHEET 4 AA7 4 PHE B 70 ASP B 75 -1 N ASP B 75 O THR B 80 SHEET 1 AA8 6 LEU B 13 VAL B 14 0 SHEET 2 AA8 6 THR B 119 VAL B 123 1 O THR B 122 N VAL B 14 SHEET 3 AA8 6 ALA B 94 THR B 101 -1 N ALA B 94 O VAL B 121 SHEET 4 AA8 6 ALA B 35 GLN B 41 -1 N PHE B 39 O TYR B 97 SHEET 5 AA8 6 ALA B 48 ILE B 53 -1 O ALA B 51 N TRP B 38 SHEET 6 AA8 6 THR B 60 TYR B 62 -1 O TYR B 61 N GLY B 52 SHEET 1 AA9 4 LEU B 13 VAL B 14 0 SHEET 2 AA9 4 THR B 119 VAL B 123 1 O THR B 122 N VAL B 14 SHEET 3 AA9 4 ALA B 94 THR B 101 -1 N ALA B 94 O VAL B 121 SHEET 4 AA9 4 ALA B 114 TRP B 115 -1 O ALA B 114 N ALA B 100 SSBOND 1 CYS B 24 CYS B 98 1555 1555 2.04 LINK SG CYS A 207 ZN ZN A1003 1555 1555 2.14 LINK SG CYS A 210 ZN ZN A1003 1555 1555 2.34 LINK SG CYS A 226 ZN ZN A1003 1555 1555 2.26 LINK ND1 HIS A 229 ZN ZN A1003 1555 1555 1.92 LINK SG CYS A 261 ZN ZN A1001 1555 1555 2.39 LINK ND1 HIS A 264 ZN ZN A1001 1555 1555 2.07 LINK SG CYS A 279 ZN ZN A1001 1555 1555 2.18 LINK SG CYS A 452 ZN ZN A1002 1555 1555 2.36 LINK SG CYS A 477 ZN ZN A1002 1555 1555 2.33 LINK SG CYS A 484 ZN ZN A1002 1555 1555 2.51 LINK ND1 HIS A 487 ZN ZN A1002 1555 1555 2.19 CRYST1 55.526 80.832 138.160 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018010 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007238 0.00000 CONECT 1152 4619 CONECT 1172 4619 CONECT 1293 4619 CONECT 1324 4619 CONECT 1593 4617 CONECT 1616 4617 CONECT 1723 4617 CONECT 3094 4618 CONECT 3284 4618 CONECT 3326 4618 CONECT 3354 4618 CONECT 3836 4419 CONECT 4419 3836 CONECT 4617 1593 1616 1723 CONECT 4618 3094 3284 3326 3354 CONECT 4619 1152 1172 1293 1324 MASTER 400 0 3 18 37 0 0 6 4671 2 16 54 END