HEADER PROTEIN TRANSPORT 09-OCT-24 9H1J TITLE CRYSTAL STRUCTURE OF THE P62 UBA DOMAIN BOUND TO VHH 6C10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH 6C10; COMPND 3 CHAIN: A, B, C, D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: SEQUESTOSOME-1; COMPND 6 CHAIN: E, F, G, H; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: SQSTM1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, MACROAUTOPHAGY, UBIQUITIN BINDING PROTEINS, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.GUTMANN,F.VILLARD REVDAT 2 17-DEC-25 9H1J 1 JRNL REVDAT 1 29-OCT-25 9H1J 0 JRNL AUTH Z.THIEL,D.MARCELLIN,C.MANNEVILLE,B.GORETZKI,L.EGGER,R.MAHER, JRNL AUTH 2 N.SICCARDI,L.TORRES,A.PROBST,C.S.MULLER,N.GEORGE,M.VOGEL, JRNL AUTH 3 S.SINTERHAUF,A.LAVOISIER,J.Y.CHOI,L.FORCELLINO, JRNL AUTH 4 A.LANDSHAMMER,P.HAUCK,C.BE,F.VILLARD,S.GUTMANN,M.MEYER, JRNL AUTH 5 F.FREULER,A.HINNIGER,C.FERNANDEZ,S.CHAU,M.PATOOR,G.SANSIG, JRNL AUTH 6 G.MITCHELL,B.NYFELER JRNL TITL DEVELOPMENT OF A P62 BIODEGRADER FOR AUTOPHAGY TARGETED JRNL TITL 2 DEGRADATION. JRNL REF NAT COMMUN V. 16 10858 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41339312 JRNL DOI 10.1038/S41467-025-65868-9 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 84752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.659 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4900 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5039 REMARK 3 ANGLE : 0.368 6830 REMARK 3 CHIRALITY : 0.037 755 REMARK 3 PLANARITY : 0.003 875 REMARK 3 DIHEDRAL : 15.272 1786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -4.1742 26.8124 38.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.4989 REMARK 3 T33: 0.1750 T12: 0.0238 REMARK 3 T13: 0.0090 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.6921 L22: 1.4895 REMARK 3 L33: 1.2875 L12: -0.1893 REMARK 3 L13: -1.1189 L23: -0.0899 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1186 S13: -0.1419 REMARK 3 S21: 0.0334 S22: 0.0111 S23: 0.1178 REMARK 3 S31: -0.0443 S32: -0.0981 S33: 0.0537 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 4.5562 9.4529 6.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.4795 REMARK 3 T33: 0.1508 T12: -0.0189 REMARK 3 T13: -0.0047 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.6872 L22: 1.4283 REMARK 3 L33: 0.6761 L12: 0.2037 REMARK 3 L13: 0.6737 L23: 0.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.0177 S13: 0.1559 REMARK 3 S21: -0.0330 S22: -0.0960 S23: 0.0355 REMARK 3 S31: 0.0446 S32: -0.0510 S33: 0.0673 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 27.0065 26.6785 0.3278 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.4409 REMARK 3 T33: 0.2025 T12: -0.0193 REMARK 3 T13: 0.0289 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.4686 L22: 1.6838 REMARK 3 L33: 1.3288 L12: 0.2830 REMARK 3 L13: -0.9509 L23: 0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -0.0881 S13: -0.2885 REMARK 3 S21: -0.0170 S22: -0.0203 S23: -0.0725 REMARK 3 S31: 0.0512 S32: 0.0348 S33: 0.0929 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 35.1023 9.8621 44.9437 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.5599 REMARK 3 T33: 0.2100 T12: 0.0102 REMARK 3 T13: -0.0389 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.2090 L22: 1.4693 REMARK 3 L33: 0.7922 L12: -0.2014 REMARK 3 L13: 0.9947 L23: -0.0884 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: 0.1156 S13: 0.3215 REMARK 3 S21: 0.0021 S22: -0.0205 S23: -0.1233 REMARK 3 S31: -0.0115 S32: -0.0321 S33: 0.1393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 10.0386 39.8703 28.1595 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.5272 REMARK 3 T33: 0.1363 T12: 0.0148 REMARK 3 T13: -0.0125 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.4224 L22: 1.4126 REMARK 3 L33: 1.5305 L12: 0.2849 REMARK 3 L13: 0.1303 L23: 0.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.0134 S13: 0.1075 REMARK 3 S21: 0.0705 S22: -0.1372 S23: 0.0406 REMARK 3 S31: 0.0217 S32: -0.1508 S33: 0.0808 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 18.9619 -3.3991 16.9167 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.5148 REMARK 3 T33: 0.1269 T12: -0.0021 REMARK 3 T13: 0.0159 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.3948 L22: 1.4728 REMARK 3 L33: 1.4009 L12: 0.0261 REMARK 3 L13: -0.2877 L23: -0.1143 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.1000 S13: -0.0893 REMARK 3 S21: -0.0199 S22: 0.0827 S23: 0.0223 REMARK 3 S31: 0.0154 S32: 0.0786 S33: -0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9H1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00007 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 19.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM CHLORIDE, 0.1M CITRIC ACID, REMARK 280 20% (W/V) PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.80650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 GLU B 1 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 GLY E 387 REMARK 465 PRO E 388 REMARK 465 PRO E 389 REMARK 465 GLU E 390 REMARK 465 LYS E 436 REMARK 465 HIS E 437 REMARK 465 GLY F 387 REMARK 465 PRO F 388 REMARK 465 PRO F 389 REMARK 465 SER F 435 REMARK 465 LYS F 436 REMARK 465 HIS F 437 REMARK 465 GLY G 387 REMARK 465 PRO G 388 REMARK 465 PRO G 389 REMARK 465 HIS G 437 REMARK 465 GLY H 387 REMARK 465 PRO H 388 REMARK 465 PRO H 389 REMARK 465 GLU H 390 REMARK 465 LYS H 436 REMARK 465 HIS H 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 116 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLU F 390 CG CD OE1 OE2 REMARK 470 LYS G 436 CG CD CE NZ REMARK 470 TYR H 434 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR G 420 N CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 81.31 -150.43 REMARK 500 THR B 28 88.36 -68.47 REMARK 500 ASN B 77 51.83 37.72 REMARK 500 THR D 28 92.08 -68.36 REMARK 500 SER D 30 1.45 -69.80 REMARK 500 ASN D 31 76.56 -159.50 REMARK 500 VAL D 48 -60.30 -108.37 REMARK 500 TYR E 434 48.93 -90.03 REMARK 500 TYR F 423 17.27 59.87 REMARK 500 SER G 435 3.63 -161.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 305 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 314 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 315 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH C 288 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH D 284 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH D 285 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH D 286 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH E 544 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH F 549 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH F 550 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH F 551 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH F 552 DISTANCE = 7.68 ANGSTROMS DBREF 9H1J A 1 121 PDB 9H1J 9H1J 1 121 DBREF 9H1J B 1 121 PDB 9H1J 9H1J 1 121 DBREF 9H1J C 1 121 PDB 9H1J 9H1J 1 121 DBREF 9H1J D 1 121 PDB 9H1J 9H1J 1 121 DBREF 9H1J E 388 437 UNP Q13501 SQSTM_HUMAN 387 436 DBREF 9H1J F 388 437 UNP Q13501 SQSTM_HUMAN 387 436 DBREF 9H1J G 388 437 UNP Q13501 SQSTM_HUMAN 387 436 DBREF 9H1J H 388 437 UNP Q13501 SQSTM_HUMAN 387 436 SEQADV 9H1J GLY E 387 UNP Q13501 EXPRESSION TAG SEQADV 9H1J GLY F 387 UNP Q13501 EXPRESSION TAG SEQADV 9H1J GLY G 387 UNP Q13501 EXPRESSION TAG SEQADV 9H1J GLY H 387 UNP Q13501 EXPRESSION TAG SEQRES 1 A 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 121 PRO GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 A 121 PHE THR PHE SER ASN TYR TRP MET TYR TRP VAL ARG GLN SEQRES 4 A 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE ASN SEQRES 5 A 121 THR GLY SER GLY ALA ALA TYR TYR THR SER SER VAL LYS SEQRES 6 A 121 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 121 LEU TYR LEU GLN MET ASN SER LEU LYS SER GLU ASP THR SEQRES 8 A 121 ALA VAL TYR TYR CYS ALA THR ASP LEU ARG GLY ALA GLN SEQRES 9 A 121 ARG GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS SEQRES 1 B 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 121 PRO GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 B 121 PHE THR PHE SER ASN TYR TRP MET TYR TRP VAL ARG GLN SEQRES 4 B 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE ASN SEQRES 5 B 121 THR GLY SER GLY ALA ALA TYR TYR THR SER SER VAL LYS SEQRES 6 B 121 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 121 LEU TYR LEU GLN MET ASN SER LEU LYS SER GLU ASP THR SEQRES 8 B 121 ALA VAL TYR TYR CYS ALA THR ASP LEU ARG GLY ALA GLN SEQRES 9 B 121 ARG GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 B 121 HIS HIS HIS HIS SEQRES 1 C 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 121 PRO GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 C 121 PHE THR PHE SER ASN TYR TRP MET TYR TRP VAL ARG GLN SEQRES 4 C 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE ASN SEQRES 5 C 121 THR GLY SER GLY ALA ALA TYR TYR THR SER SER VAL LYS SEQRES 6 C 121 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 121 LEU TYR LEU GLN MET ASN SER LEU LYS SER GLU ASP THR SEQRES 8 C 121 ALA VAL TYR TYR CYS ALA THR ASP LEU ARG GLY ALA GLN SEQRES 9 C 121 ARG GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 C 121 HIS HIS HIS HIS SEQRES 1 D 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 121 PRO GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 D 121 PHE THR PHE SER ASN TYR TRP MET TYR TRP VAL ARG GLN SEQRES 4 D 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE ASN SEQRES 5 D 121 THR GLY SER GLY ALA ALA TYR TYR THR SER SER VAL LYS SEQRES 6 D 121 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 121 LEU TYR LEU GLN MET ASN SER LEU LYS SER GLU ASP THR SEQRES 8 D 121 ALA VAL TYR TYR CYS ALA THR ASP LEU ARG GLY ALA GLN SEQRES 9 D 121 ARG GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 10 D 121 HIS HIS HIS HIS SEQRES 1 E 51 GLY PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER LEU SEQRES 2 E 51 SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY GLY SEQRES 3 E 51 TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP ILE SEQRES 4 E 51 GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS SEQRES 1 F 51 GLY PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER LEU SEQRES 2 F 51 SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY GLY SEQRES 3 F 51 TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP ILE SEQRES 4 F 51 GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS SEQRES 1 G 51 GLY PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER LEU SEQRES 2 G 51 SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY GLY SEQRES 3 G 51 TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP ILE SEQRES 4 G 51 GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS SEQRES 1 H 51 GLY PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER LEU SEQRES 2 H 51 SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY GLY SEQRES 3 H 51 TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP ILE SEQRES 4 H 51 GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS FORMUL 9 HOH *579(H2 O) HELIX 1 AA1 THR A 28 ASN A 31 5 4 HELIX 2 AA2 LYS A 87 THR A 91 5 5 HELIX 3 AA3 THR B 28 ASN B 31 5 4 HELIX 4 AA4 LYS B 87 THR B 91 5 5 HELIX 5 AA5 LYS C 87 THR C 91 5 5 HELIX 6 AA6 THR D 28 ASN D 31 5 4 HELIX 7 AA7 LYS D 87 THR D 91 5 5 HELIX 8 AA8 ASP E 392 MET E 405 1 14 HELIX 9 AA9 ASP E 409 GLY E 411 5 3 HELIX 10 AB1 GLY E 412 LYS E 421 1 10 HELIX 11 AB2 ASP E 424 TYR E 434 1 11 HELIX 12 AB3 ASP F 392 MET F 405 1 14 HELIX 13 AB4 ASP F 409 GLY F 411 5 3 HELIX 14 AB5 GLY F 412 LYS F 421 1 10 HELIX 15 AB6 ASP F 424 TYR F 434 1 11 HELIX 16 AB7 ASP G 392 MET G 405 1 14 HELIX 17 AB8 ASP G 409 GLY G 411 5 3 HELIX 18 AB9 GLY G 412 THR G 420 1 9 HELIX 19 AC1 ASP G 424 TYR G 434 1 11 HELIX 20 AC2 ASP H 392 SER H 404 1 13 HELIX 21 AC3 ASP H 409 GLY H 411 5 3 HELIX 22 AC4 GLY H 412 LYS H 421 1 10 HELIX 23 AC5 ASP H 424 TYR H 434 1 11 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 109 VAL A 113 1 O THR A 112 N VAL A 12 SHEET 3 AA2 6 ALA A 92 ALA A 97 -1 N TYR A 94 O THR A 109 SHEET 4 AA2 6 TRP A 33 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 ASN A 52 -1 O VAL A 48 N TRP A 36 SHEET 6 AA2 6 ALA A 58 TYR A 60 -1 O TYR A 59 N THR A 50 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA3 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA3 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA4 6 GLY B 10 VAL B 12 0 SHEET 2 AA4 6 THR B 109 VAL B 113 1 O THR B 112 N VAL B 12 SHEET 3 AA4 6 ALA B 92 ALA B 97 -1 N TYR B 94 O THR B 109 SHEET 4 AA4 6 TRP B 33 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA4 6 LEU B 45 ASN B 52 -1 O VAL B 48 N TRP B 36 SHEET 6 AA4 6 ALA B 58 TYR B 60 -1 O TYR B 59 N THR B 50 SHEET 1 AA5 4 GLN C 3 SER C 7 0 SHEET 2 AA5 4 SER C 17 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 AA5 4 THR C 78 ASN C 84 -1 O MET C 83 N LEU C 18 SHEET 4 AA5 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 AA6 6 LEU C 11 VAL C 12 0 SHEET 2 AA6 6 THR C 109 VAL C 113 1 O THR C 112 N VAL C 12 SHEET 3 AA6 6 ALA C 92 ALA C 97 -1 N TYR C 94 O THR C 109 SHEET 4 AA6 6 TRP C 33 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA6 6 LEU C 45 ASN C 52 -1 O VAL C 48 N TRP C 36 SHEET 6 AA6 6 ALA C 58 TYR C 60 -1 O TYR C 59 N THR C 50 SHEET 1 AA7 4 GLN D 3 SER D 7 0 SHEET 2 AA7 4 LEU D 18 SER D 25 -1 O SER D 25 N GLN D 3 SHEET 3 AA7 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA7 4 PHE D 68 ASP D 73 -1 N THR D 69 O GLN D 82 SHEET 1 AA8 6 GLY D 10 VAL D 12 0 SHEET 2 AA8 6 THR D 109 VAL D 113 1 O THR D 112 N VAL D 12 SHEET 3 AA8 6 ALA D 92 ALA D 97 -1 N TYR D 94 O THR D 109 SHEET 4 AA8 6 TRP D 33 GLN D 39 -1 N VAL D 37 O TYR D 95 SHEET 5 AA8 6 LEU D 45 ASN D 52 -1 O VAL D 48 N TRP D 36 SHEET 6 AA8 6 ALA D 58 TYR D 60 -1 O TYR D 59 N THR D 50 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 3 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 96 1555 1555 2.03 CRYST1 62.886 73.613 89.785 90.00 90.22 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015902 0.000000 0.000061 0.00000 SCALE2 0.000000 0.013585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011138 0.00000 CONECT 151 740 CONECT 740 151 CONECT 1022 1626 CONECT 1626 1022 CONECT 1912 2507 CONECT 2507 1912 CONECT 2796 3385 CONECT 3385 2796 MASTER 412 0 0 23 40 0 0 6 5483 8 8 56 END