HEADER OXIDOREDUCTASE 09-OCT-24 9H1M TITLE RECOMBINANT FERRIC HORSERADISH PEROXIDASE C1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE C1A; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARMORACIA RUSTICANA; SOURCE 3 ORGANISM_TAXID: 3704; SOURCE 4 GENE: PRXC1A, HPRC1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HORSERADISH PEROXIDASE, FERRIC, OXIDOREDUCTASES, HEME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.NESA,S.K.MANDAL,C.TOELZER,D.HUMER,P.C.E.MOODY,I.BERGER,O.SPADIUT, AUTHOR 2 E.L.RAVEN REVDAT 2 16-APR-25 9H1M 1 JRNL REVDAT 1 19-MAR-25 9H1M 0 JRNL AUTH M.L.NESA,S.K.MANDAL,C.TOELZER,D.HUMER,P.C.E.MOODY,I.BERGER, JRNL AUTH 2 O.SPADIUT,E.L.RAVEN JRNL TITL CRYSTAL STRUCTURE OF FERRIC RECOMBINANT HORSERADISH JRNL TITL 2 PEROXIDASE. JRNL REF J.BIOL.INORG.CHEM. V. 30 221 2025 JRNL REFN ESSN 1432-1327 JRNL PMID 40053124 JRNL DOI 10.1007/S00775-025-02103-2 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 36260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.9300 - 3.1200 0.88 2441 140 0.1641 0.2101 REMARK 3 2 3.1200 - 2.7300 0.99 2764 152 0.1626 0.1893 REMARK 3 3 2.7200 - 2.4800 0.93 2537 150 0.1525 0.1837 REMARK 3 4 2.4800 - 2.3000 1.00 2724 156 0.1437 0.1585 REMARK 3 5 2.3000 - 2.1600 0.92 2521 132 0.1399 0.1763 REMARK 3 6 2.1600 - 2.0500 0.87 2333 136 0.1468 0.1713 REMARK 3 7 2.0500 - 1.9700 0.99 2659 162 0.1597 0.2332 REMARK 3 8 1.9600 - 1.8900 0.78 2112 114 0.1995 0.2274 REMARK 3 9 1.8900 - 1.8200 0.83 2207 135 0.2221 0.2321 REMARK 3 10 1.8200 - 1.7700 0.98 2665 134 0.2196 0.2509 REMARK 3 11 1.7700 - 1.7200 0.84 2275 108 0.2383 0.2639 REMARK 3 12 1.7200 - 1.6700 0.75 2000 98 0.3037 0.3299 REMARK 3 13 1.6700 - 1.6300 0.82 2206 126 0.3162 0.3180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2491 REMARK 3 ANGLE : 0.876 3396 REMARK 3 CHIRALITY : 0.042 380 REMARK 3 PLANARITY : 0.008 448 REMARK 3 DIHEDRAL : 13.381 900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9991 13.0905 33.6762 REMARK 3 T TENSOR REMARK 3 T11: 0.3012 T22: 0.2656 REMARK 3 T33: 0.2375 T12: -0.0013 REMARK 3 T13: 0.0002 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.0903 L22: 0.1670 REMARK 3 L33: 0.1683 L12: -0.0464 REMARK 3 L13: -0.0819 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.3302 S13: -0.0393 REMARK 3 S21: -0.1796 S22: -0.0404 S23: -0.0061 REMARK 3 S31: 0.0999 S32: 0.0347 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7643 23.0100 42.6938 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2791 REMARK 3 T33: 0.2150 T12: -0.0089 REMARK 3 T13: -0.0105 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.0138 L22: 0.1261 REMARK 3 L33: 0.1754 L12: 0.0363 REMARK 3 L13: -0.0517 L23: -0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.2353 S13: 0.0033 REMARK 3 S21: 0.0704 S22: -0.0636 S23: 0.0770 REMARK 3 S31: 0.1733 S32: -0.0533 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6717 16.2156 56.3181 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.2023 REMARK 3 T33: 0.2256 T12: -0.0285 REMARK 3 T13: 0.0209 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1372 L22: 0.1214 REMARK 3 L33: -0.0069 L12: -0.0269 REMARK 3 L13: 0.0817 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.1423 S13: -0.0597 REMARK 3 S21: 0.0949 S22: -0.1272 S23: 0.0762 REMARK 3 S31: -0.0255 S32: 0.0127 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2132 12.2928 44.3583 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.2404 REMARK 3 T33: 0.2490 T12: -0.0128 REMARK 3 T13: -0.0085 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.2349 L22: 0.3651 REMARK 3 L33: 0.2625 L12: 0.2570 REMARK 3 L13: 0.0560 L23: -0.2986 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: 0.0756 S13: -0.1583 REMARK 3 S21: 0.2220 S22: -0.0746 S23: 0.3247 REMARK 3 S31: 0.2540 S32: -0.1773 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8775 18.7070 40.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.2524 REMARK 3 T33: 0.2172 T12: 0.0015 REMARK 3 T13: -0.0052 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: -0.0301 L22: 0.1989 REMARK 3 L33: 0.0585 L12: -0.0522 REMARK 3 L13: 0.1205 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0258 S13: -0.0812 REMARK 3 S21: -0.0252 S22: -0.1099 S23: -0.0605 REMARK 3 S31: 0.0840 S32: 0.0466 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0738 34.0118 54.6606 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2070 REMARK 3 T33: 0.2477 T12: -0.0059 REMARK 3 T13: 0.0006 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.0840 L22: 0.1928 REMARK 3 L33: 0.0856 L12: -0.0554 REMARK 3 L13: 0.0706 L23: 0.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: -0.0668 S13: 0.0216 REMARK 3 S21: 0.2232 S22: -0.0405 S23: -0.0507 REMARK 3 S31: -0.0280 S32: -0.0196 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1388 36.8894 47.4155 REMARK 3 T TENSOR REMARK 3 T11: 0.2023 T22: 0.2415 REMARK 3 T33: 0.2547 T12: 0.0065 REMARK 3 T13: 0.0034 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.0437 L22: 0.2193 REMARK 3 L33: -0.0295 L12: -0.0300 REMARK 3 L13: 0.0190 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.0083 S13: 0.0590 REMARK 3 S21: 0.0276 S22: 0.0078 S23: 0.0794 REMARK 3 S31: 0.0180 S32: 0.0440 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1921 43.8735 50.7176 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.2643 REMARK 3 T33: 0.2771 T12: 0.0031 REMARK 3 T13: 0.0210 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.0420 L22: 0.3263 REMARK 3 L33: 0.2044 L12: 0.0794 REMARK 3 L13: 0.1001 L23: -0.0927 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0381 S13: 0.0166 REMARK 3 S21: 0.1498 S22: 0.0132 S23: 0.1013 REMARK 3 S31: -0.0511 S32: -0.0104 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9807 43.1270 40.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.2310 REMARK 3 T33: 0.2321 T12: 0.0031 REMARK 3 T13: -0.0082 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.2428 L22: 0.3472 REMARK 3 L33: 0.1471 L12: -0.1488 REMARK 3 L13: 0.0647 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0179 S13: 0.0732 REMARK 3 S21: -0.0704 S22: -0.0585 S23: 0.0624 REMARK 3 S31: -0.1191 S32: -0.0191 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9806 31.6041 36.6703 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.2367 REMARK 3 T33: 0.1946 T12: 0.0156 REMARK 3 T13: 0.0072 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: -0.0333 L22: 0.1488 REMARK 3 L33: 0.0358 L12: 0.0084 REMARK 3 L13: 0.0627 L23: 0.0611 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: 0.0288 S13: -0.0790 REMARK 3 S21: -0.1091 S22: -0.0454 S23: -0.1310 REMARK 3 S31: 0.2101 S32: 0.1309 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4591 9.6600 49.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.2892 T22: 0.2595 REMARK 3 T33: 0.2475 T12: -0.0085 REMARK 3 T13: 0.0173 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0272 L22: 0.0477 REMARK 3 L33: 0.1402 L12: -0.0480 REMARK 3 L13: 0.0581 L23: -0.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.0144 S13: 0.0524 REMARK 3 S21: 0.1452 S22: -0.0557 S23: 0.0479 REMARK 3 S31: 0.1043 S32: 0.0281 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9H1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1292142090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37103 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 58.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1500, 100 MM SPG (2:7:7, REMARK 280 SUCCINIC ACID:SODIUM HYDROGEN PHOSPHATE:GLYCINE BUFFER PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.07850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.58900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.53050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.58900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.07850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.53050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASN A 307 REMARK 465 SER A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 623 2.04 REMARK 500 O HOH A 620 O HOH A 624 2.05 REMARK 500 O HOH A 597 O HOH A 639 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 67.79 -158.26 REMARK 500 SER A 73 -63.74 -156.74 REMARK 500 THR A 94 -52.25 -120.26 REMARK 500 ASN A 186 82.07 -160.35 REMARK 500 THR A 288 62.47 29.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 O REMARK 620 2 ASP A 43 OD1 78.4 REMARK 620 3 VAL A 46 O 85.3 163.6 REMARK 620 4 GLY A 48 O 71.2 88.1 86.9 REMARK 620 5 ASP A 50 OD1 140.4 80.4 113.2 75.1 REMARK 620 6 SER A 52 OG 141.3 100.1 92.5 147.4 75.3 REMARK 620 7 HOH A 510 O 76.6 84.8 91.1 147.7 134.0 64.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HEM A 401 NA 97.2 REMARK 620 3 HEM A 401 NB 98.5 88.4 REMARK 620 4 HEM A 401 NC 93.6 169.2 89.4 REMARK 620 5 HEM A 401 ND 97.9 89.1 163.6 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 171 O REMARK 620 2 THR A 171 OG1 73.6 REMARK 620 3 ASP A 222 OD2 90.8 89.2 REMARK 620 4 THR A 225 O 80.9 154.5 90.0 REMARK 620 5 THR A 225 OG1 151.2 134.5 84.6 70.8 REMARK 620 6 ILE A 228 O 84.7 89.0 175.4 89.8 99.7 REMARK 620 7 ASP A 230 OD1 139.0 68.0 102.4 136.8 69.5 80.8 REMARK 620 N 1 2 3 4 5 6 DBREF 9H1M A 1 308 UNP P00433 PER1A_ARMRU 31 338 SEQADV 9H1M MET A 0 UNP P00433 INITIATING METHIONINE SEQRES 1 A 309 MET GLN LEU THR PRO THR PHE TYR ASP ASN SER CYS PRO SEQRES 2 A 309 ASN VAL SER ASN ILE VAL ARG ASP THR ILE VAL ASN GLU SEQRES 3 A 309 LEU ARG SER ASP PRO ARG ILE ALA ALA SER ILE LEU ARG SEQRES 4 A 309 LEU HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP ALA SEQRES 5 A 309 SER ILE LEU LEU ASP ASN THR THR SER PHE ARG THR GLU SEQRES 6 A 309 LYS ASP ALA PHE GLY ASN ALA ASN SER ALA ARG GLY PHE SEQRES 7 A 309 PRO VAL ILE ASP ARG MET LYS ALA ALA VAL GLU SER ALA SEQRES 8 A 309 CYS PRO ARG THR VAL SER CYS ALA ASP LEU LEU THR ILE SEQRES 9 A 309 ALA ALA GLN GLN SER VAL THR LEU ALA GLY GLY PRO SER SEQRES 10 A 309 TRP ARG VAL PRO LEU GLY ARG ARG ASP SER LEU GLN ALA SEQRES 11 A 309 PHE LEU ASP LEU ALA ASN ALA ASN LEU PRO ALA PRO PHE SEQRES 12 A 309 PHE THR LEU PRO GLN LEU LYS ASP SER PHE ARG ASN VAL SEQRES 13 A 309 GLY LEU ASN ARG SER SER ASP LEU VAL ALA LEU SER GLY SEQRES 14 A 309 GLY HIS THR PHE GLY LYS ASN GLN CYS ARG PHE ILE MET SEQRES 15 A 309 ASP ARG LEU TYR ASN PHE SER ASN THR GLY LEU PRO ASP SEQRES 16 A 309 PRO THR LEU ASN THR THR TYR LEU GLN THR LEU ARG GLY SEQRES 17 A 309 LEU CYS PRO LEU ASN GLY ASN LEU SER ALA LEU VAL ASP SEQRES 18 A 309 PHE ASP LEU ARG THR PRO THR ILE PHE ASP ASN LYS TYR SEQRES 19 A 309 TYR VAL ASN LEU GLU GLU GLN LYS GLY LEU ILE GLN SER SEQRES 20 A 309 ASP GLN GLU LEU PHE SER SER PRO ASN ALA THR ASP THR SEQRES 21 A 309 ILE PRO LEU VAL ARG SER PHE ALA ASN SER THR GLN THR SEQRES 22 A 309 PHE PHE ASN ALA PHE VAL GLU ALA MET ASP ARG MET GLY SEQRES 23 A 309 ASN ILE THR PRO LEU THR GLY THR GLN GLY GLN ILE ARG SEQRES 24 A 309 LEU ASN CYS ARG VAL VAL ASN SER ASN SER HET HEM A 401 43 HET CA A 402 1 HET CA A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET 2HP A 406 5 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 2HP DIHYDROGENPHOSPHATE ION HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CA 2(CA 2+) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 7 2HP H2 O4 P 1- FORMUL 11 HOH *140(H2 O) HELIX 1 AA1 ASN A 13 ARG A 27 1 15 HELIX 2 AA2 ARG A 31 PHE A 45 1 15 HELIX 3 AA3 ALA A 51 LEU A 55 5 5 HELIX 4 AA4 THR A 63 ALA A 67 5 5 HELIX 5 AA5 GLY A 76 CYS A 91 1 16 HELIX 6 AA6 SER A 96 ALA A 112 1 17 HELIX 7 AA7 PHE A 130 LEU A 138 1 9 HELIX 8 AA8 THR A 144 VAL A 155 1 12 HELIX 9 AA9 ARG A 159 GLY A 168 1 10 HELIX 10 AB1 GLY A 169 PHE A 172 5 4 HELIX 11 AB2 ILE A 180 ASN A 186 1 7 HELIX 12 AB3 PHE A 187 THR A 190 5 4 HELIX 13 AB4 ASN A 198 CYS A 209 1 12 HELIX 14 AB5 ASN A 231 GLU A 239 1 9 HELIX 15 AB6 ILE A 244 SER A 253 1 10 HELIX 16 AB7 THR A 259 SER A 269 1 11 HELIX 17 AB8 SER A 269 GLY A 285 1 17 SHEET 1 AA1 2 LYS A 174 GLN A 176 0 SHEET 2 AA1 2 LEU A 218 ASP A 220 -1 O VAL A 219 N ASN A 175 SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 49 1555 1555 2.05 SSBOND 3 CYS A 97 CYS A 301 1555 1555 2.06 SSBOND 4 CYS A 177 CYS A 209 1555 1555 2.04 LINK O ASP A 43 CA CA A 402 1555 1555 2.36 LINK OD1 ASP A 43 CA CA A 402 1555 1555 2.38 LINK O VAL A 46 CA CA A 402 1555 1555 2.31 LINK O GLY A 48 CA CA A 402 1555 1555 2.49 LINK OD1 ASP A 50 CA CA A 402 1555 1555 2.35 LINK OG SER A 52 CA CA A 402 1555 1555 2.42 LINK NE2 HIS A 170 FE HEM A 401 1555 1555 2.03 LINK O THR A 171 CA CA A 403 1555 1555 2.31 LINK OG1 THR A 171 CA CA A 403 1555 1555 2.51 LINK OD2 ASP A 222 CA CA A 403 1555 1555 2.21 LINK O THR A 225 CA CA A 403 1555 1555 2.38 LINK OG1 THR A 225 CA CA A 403 1555 1555 2.44 LINK O ILE A 228 CA CA A 403 1555 1555 2.39 LINK OD1 ASP A 230 CA CA A 403 1555 1555 2.44 LINK CA CA A 402 O HOH A 510 1555 1555 2.43 CRYST1 40.157 67.061 117.178 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008534 0.00000 CONECT 89 707 708 CONECT 343 2420 CONECT 346 2420 CONECT 353 389 CONECT 368 2420 CONECT 383 2420 CONECT 389 353 CONECT 396 2420 CONECT 408 2420 CONECT 707 89 CONECT 708 89 CONECT 752 2336 CONECT 1299 2419 CONECT 1303 2421 CONECT 1305 2421 CONECT 1353 1614 CONECT 1614 1353 CONECT 1710 2421 CONECT 1733 2421 CONECT 1735 2421 CONECT 1754 2421 CONECT 1776 2421 CONECT 2336 752 CONECT 2377 2381 2408 CONECT 2378 2384 2391 CONECT 2379 2394 2398 CONECT 2380 2401 2405 CONECT 2381 2377 2382 2415 CONECT 2382 2381 2383 2386 CONECT 2383 2382 2384 2385 CONECT 2384 2378 2383 2415 CONECT 2385 2383 CONECT 2386 2382 2387 CONECT 2387 2386 2388 CONECT 2388 2387 2389 2390 CONECT 2389 2388 CONECT 2390 2388 CONECT 2391 2378 2392 2416 CONECT 2392 2391 2393 2395 CONECT 2393 2392 2394 2396 CONECT 2394 2379 2393 2416 CONECT 2395 2392 CONECT 2396 2393 2397 CONECT 2397 2396 CONECT 2398 2379 2399 2417 CONECT 2399 2398 2400 2402 CONECT 2400 2399 2401 2403 CONECT 2401 2380 2400 2417 CONECT 2402 2399 CONECT 2403 2400 2404 CONECT 2404 2403 CONECT 2405 2380 2406 2418 CONECT 2406 2405 2407 2409 CONECT 2407 2406 2408 2410 CONECT 2408 2377 2407 2418 CONECT 2409 2406 CONECT 2410 2407 2411 CONECT 2411 2410 2412 CONECT 2412 2411 2413 2414 CONECT 2413 2412 CONECT 2414 2412 CONECT 2415 2381 2384 2419 CONECT 2416 2391 2394 2419 CONECT 2417 2398 2401 2419 CONECT 2418 2405 2408 2419 CONECT 2419 1299 2415 2416 2417 CONECT 2419 2418 CONECT 2420 343 346 368 383 CONECT 2420 396 408 2456 CONECT 2421 1303 1305 1710 1733 CONECT 2421 1735 1754 1776 CONECT 2422 2423 2424 CONECT 2423 2422 CONECT 2424 2422 2425 CONECT 2425 2424 CONECT 2426 2427 2428 CONECT 2427 2426 CONECT 2428 2426 2429 CONECT 2429 2428 CONECT 2430 2431 2432 2433 2434 CONECT 2431 2430 CONECT 2432 2430 CONECT 2433 2430 CONECT 2434 2430 CONECT 2435 2436 2437 CONECT 2436 2435 CONECT 2437 2435 2438 CONECT 2438 2437 CONECT 2439 2440 2441 CONECT 2440 2439 CONECT 2441 2439 2442 CONECT 2442 2441 CONECT 2443 2444 2445 CONECT 2444 2443 CONECT 2445 2443 2446 CONECT 2446 2445 CONECT 2456 2420 MASTER 452 0 9 17 2 0 0 6 2579 1 97 24 END