data_9H83 # _entry.id 9H83 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9H83 pdb_00009h83 10.2210/pdb9h83/pdb WWPDB D_1292142825 ? ? EMDB EMD-51929 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-12-04 ? 2 'Structure model' 1 1 2025-06-18 ? 3 'Structure model' 1 2 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation.year' 4 2 'Structure model' '_em_admin.last_update' 5 3 'Structure model' '_citation.country' 6 3 'Structure model' '_citation.journal_abbrev' 7 3 'Structure model' '_citation.journal_id_ASTM' 8 3 'Structure model' '_citation.journal_id_CSD' 9 3 'Structure model' '_citation.journal_id_ISSN' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 3 'Structure model' '_citation_author.name' 15 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9H83 _pdbx_database_status.recvd_initial_deposition_date 2024-10-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Small circular RNA dimer - Class 2' _pdbx_database_related.db_id EMD-51929 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email esa@inano.au.dk _pdbx_contact_author.name_first Ebbe _pdbx_contact_author.name_last Andersen _pdbx_contact_author.name_mi S. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6236-8164 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McRae, E.K.' 1 0000-0001-9105-2575 'Kristoffersen, E.L.' 2 0000-0001-8965-8201 'Holliger, P.' 3 0000-0002-3440-9854 'Andersen, E.S.' 4 0000-0002-6236-8164 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Roles of dimeric intermediates in RNA-catalyzed rolling circle synthesis.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf057 _citation.pdbx_database_id_PubMed 40521664 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kristoffersen, E.L.' 1 ? primary 'McRae, E.K.S.' 2 ? primary 'Sorensen, N.R.' 3 ? primary 'Holliger, P.' 4 ? primary 'Andersen, E.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Complementary strand' 11817.235 2 ? ? ? ? 2 polymer man 'Circular RNA' 11191.466 2 ? ? ? 'Circular RNA' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no UGGAAGAAAUCGAAGAAGAUGAAGAACGCGAAGAAC UGGAAGAAAUCGAAGAAGAUGAAGAACGCGAAGAAC A,B ? 2 polyribonucleotide no no AUCUUCUUCGAUUUCUUCCAGUUCUUCGCGUUCUUC AUCUUCUUCGAUUUCUUCCAGUUCUUCGCGUUCUUC D,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 A n 1 9 A n 1 10 U n 1 11 C n 1 12 G n 1 13 A n 1 14 A n 1 15 G n 1 16 A n 1 17 A n 1 18 G n 1 19 A n 1 20 U n 1 21 G n 1 22 A n 1 23 A n 1 24 G n 1 25 A n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 G n 1 31 A n 1 32 A n 1 33 G n 1 34 A n 1 35 A n 1 36 C n 2 1 A n 2 2 U n 2 3 C n 2 4 U n 2 5 U n 2 6 C n 2 7 U n 2 8 U n 2 9 C n 2 10 G n 2 11 A n 2 12 U n 2 13 U n 2 14 U n 2 15 C n 2 16 U n 2 17 U n 2 18 C n 2 19 C n 2 20 A n 2 21 G n 2 22 U n 2 23 U n 2 24 C n 2 25 U n 2 26 U n 2 27 C n 2 28 G n 2 29 C n 2 30 G n 2 31 U n 2 32 U n 2 33 C n 2 34 U n 2 35 U n 2 36 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 ? ? ? A . n A 1 18 G 18 18 ? ? ? A . n A 1 19 A 19 19 ? ? ? A . n A 1 20 U 20 20 ? ? ? A . n A 1 21 G 21 21 ? ? ? A . n A 1 22 A 22 22 ? ? ? A . n A 1 23 A 23 23 ? ? ? A . n A 1 24 G 24 24 ? ? ? A . n A 1 25 A 25 25 ? ? ? A . n A 1 26 A 26 26 ? ? ? A . n A 1 27 C 27 27 ? ? ? A . n A 1 28 G 28 28 ? ? ? A . n A 1 29 C 29 29 ? ? ? A . n A 1 30 G 30 30 ? ? ? A . n A 1 31 A 31 31 ? ? ? A . n A 1 32 A 32 32 ? ? ? A . n A 1 33 G 33 33 ? ? ? A . n A 1 34 A 34 34 ? ? ? A . n A 1 35 A 35 35 ? ? ? A . n A 1 36 C 36 36 ? ? ? A . n B 2 1 A 1 1 1 A A D . n B 2 2 U 2 2 2 U U D . n B 2 3 C 3 3 3 C C D . n B 2 4 U 4 4 4 U U D . n B 2 5 U 5 5 5 U U D . n B 2 6 C 6 6 6 C C D . n B 2 7 U 7 7 7 U U D . n B 2 8 U 8 8 8 U U D . n B 2 9 C 9 9 9 C C D . n B 2 10 G 10 10 10 G G D . n B 2 11 A 11 11 11 A A D . n B 2 12 U 12 12 12 U U D . n B 2 13 U 13 13 13 U U D . n B 2 14 U 14 14 14 U U D . n B 2 15 C 15 15 15 C C D . n B 2 16 U 16 16 16 U U D . n B 2 17 U 17 17 17 U U D . n B 2 18 C 18 18 18 C C D . n B 2 19 C 19 19 19 C C D . n B 2 20 A 20 32 ? ? ? D . n B 2 21 G 21 33 ? ? ? D . n B 2 22 U 22 34 ? ? ? D . n B 2 23 U 23 35 35 U U D . n B 2 24 C 24 36 36 C C D . n B 2 25 U 25 37 ? ? ? D . n B 2 26 U 26 38 ? ? ? D . n B 2 27 C 27 39 ? ? ? D . n B 2 28 G 28 40 ? ? ? D . n B 2 29 C 29 41 ? ? ? D . n B 2 30 G 30 42 ? ? ? D . n B 2 31 U 31 43 ? ? ? D . n B 2 32 U 32 44 ? ? ? D . n B 2 33 C 33 45 ? ? ? D . n B 2 34 U 34 46 ? ? ? D . n B 2 35 U 35 47 ? ? ? D . n B 2 36 C 36 48 ? ? ? D . n C 2 1 A 1 1 1 A A C . n C 2 2 U 2 2 2 U U C . n C 2 3 C 3 3 3 C C C . n C 2 4 U 4 4 4 U U C . n C 2 5 U 5 5 5 U U C . n C 2 6 C 6 6 6 C C C . n C 2 7 U 7 7 7 U U C . n C 2 8 U 8 8 8 U U C . n C 2 9 C 9 9 9 C C C . n C 2 10 G 10 10 10 G G C . n C 2 11 A 11 11 11 A A C . n C 2 12 U 12 12 12 U U C . n C 2 13 U 13 13 13 U U C . n C 2 14 U 14 14 14 U U C . n C 2 15 C 15 15 15 C C C . n C 2 16 U 16 16 16 U U C . n C 2 17 U 17 17 17 U U C . n C 2 18 C 18 18 18 C C C . n C 2 19 C 19 19 19 C C C . n C 2 20 A 20 20 20 A A C . n C 2 21 G 21 21 21 G G C . n C 2 22 U 22 22 22 U U C . n C 2 23 U 23 23 23 U U C . n C 2 24 C 24 24 24 C C C . n C 2 25 U 25 25 25 U U C . n C 2 26 U 26 26 26 U U C . n C 2 27 C 27 27 27 C C C . n C 2 28 G 28 28 28 G G C . n C 2 29 C 29 29 29 C C C . n C 2 30 G 30 30 30 G G C . n C 2 31 U 31 31 31 U U C . n C 2 32 U 32 32 32 U U C . n C 2 33 C 33 33 33 C C C . n C 2 34 U 34 34 34 U U C . n C 2 35 U 35 35 35 U U C . n C 2 36 C 36 36 36 C C C . n D 1 1 U 1 1 1 U U B . n D 1 2 G 2 2 2 G G B . n D 1 3 G 3 3 3 G G B . n D 1 4 A 4 4 4 A A B . n D 1 5 A 5 5 5 A A B . n D 1 6 G 6 6 6 G G B . n D 1 7 A 7 7 7 A A B . n D 1 8 A 8 8 8 A A B . n D 1 9 A 9 9 9 A A B . n D 1 10 U 10 10 10 U U B . n D 1 11 C 11 11 11 C C B . n D 1 12 G 12 12 12 G G B . n D 1 13 A 13 13 13 A A B . n D 1 14 A 14 14 14 A A B . n D 1 15 G 15 15 15 G G B . n D 1 16 A 16 16 16 A A B . n D 1 17 A 17 17 17 A A B . n D 1 18 G 18 18 18 G G B . n D 1 19 A 19 19 19 A A B . n D 1 20 U 20 20 20 U U B . n D 1 21 G 21 21 21 G G B . n D 1 22 A 22 22 22 A A B . n D 1 23 A 23 23 23 A A B . n D 1 24 G 24 24 24 G G B . n D 1 25 A 25 25 25 A A B . n D 1 26 A 26 26 26 A A B . n D 1 27 C 27 27 27 C C B . n D 1 28 G 28 28 28 G G B . n D 1 29 C 29 29 29 C C B . n D 1 30 G 30 30 30 G G B . n D 1 31 A 31 31 31 A A B . n D 1 32 A 32 32 32 A A B . n D 1 33 G 33 33 33 G G B . n D 1 34 A 34 34 34 A A B . n D 1 35 A 35 35 35 A A B . n D 1 36 C 36 36 36 C C B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9H83 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9H83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9H83 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9H83 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9H83 _struct.title 'Small circular RNA dimer - Class 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9H83 _struct_keywords.text 'small RNA circles, dimer, RNA crossover, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9H83 9H83 ? 1 ? 1 2 PDB 9H83 9H83 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9H83 A 1 ? 36 ? 9H83 1 ? 36 ? 1 36 2 2 9H83 D 1 ? 36 ? 9H83 1 ? 48 ? 1 48 3 2 9H83 C 1 ? 36 ? 9H83 1 ? 36 ? 1 36 4 1 9H83 B 1 ? 36 ? 9H83 1 ? 36 ? 1 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 C C 19 O2 ? ? A G 2 C C 19 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 3 N1 ? ? ? 1_555 C C 18 N3 ? ? A G 3 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 N2 ? ? ? 1_555 C C 18 O2 ? ? A G 3 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 O6 ? ? ? 1_555 C C 18 N4 ? ? A G 3 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 4 N1 ? ? ? 1_555 C U 17 N3 ? ? A A 4 C U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N6 ? ? ? 1_555 C U 17 O4 ? ? A A 4 C U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 5 N1 ? ? ? 1_555 C U 16 N3 ? ? A A 5 C U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N6 ? ? ? 1_555 C U 16 O4 ? ? A A 5 C U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 6 N1 ? ? ? 1_555 C C 15 N3 ? ? A G 6 C C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 C C 15 O2 ? ? A G 6 C C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 O6 ? ? ? 1_555 C C 15 N4 ? ? A G 6 C C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 7 N1 ? ? ? 1_555 C U 14 N3 ? ? A A 7 C U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N6 ? ? ? 1_555 C U 14 O4 ? ? A A 7 C U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 8 N1 ? ? ? 1_555 C U 13 N3 ? ? A A 8 C U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 8 N6 ? ? ? 1_555 C U 13 O4 ? ? A A 8 C U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 C U 12 N3 ? ? A A 9 C U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 C U 12 O4 ? ? A A 9 C U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 10 N3 ? ? ? 1_555 C A 11 N1 ? ? A U 10 C A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 C A 11 N6 ? ? A U 10 C A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N3 ? ? ? 1_555 C G 10 N1 ? ? A C 11 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N4 ? ? ? 1_555 C G 10 O6 ? ? A C 11 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 O2 ? ? ? 1_555 C G 10 N2 ? ? A C 11 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 C C 9 N3 ? ? A G 12 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 C C 9 O2 ? ? A G 12 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 C C 9 N4 ? ? A G 12 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 C U 8 N3 ? ? A A 13 C U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 C U 8 O4 ? ? A A 13 C U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N1 ? ? ? 1_555 C U 7 N3 ? ? A A 14 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 C U 7 O4 ? ? A A 14 C U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 C C 6 N3 ? ? A G 15 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 C C 6 O2 ? ? A G 15 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 C C 6 N4 ? ? A G 15 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 16 N1 ? ? ? 1_555 C U 5 N3 ? ? A A 16 C U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 16 N6 ? ? ? 1_555 C U 5 O4 ? ? A A 16 C U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 21 N1 ? ? ? 1_555 D C 36 N3 ? ? C G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 21 N2 ? ? ? 1_555 D C 36 O2 ? ? C G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 21 O6 ? ? ? 1_555 D C 36 N4 ? ? C G 21 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C U 22 N3 ? ? ? 1_555 D A 35 N1 ? ? C U 22 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C U 22 O4 ? ? ? 1_555 D A 35 N6 ? ? C U 22 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C U 23 N3 ? ? ? 1_555 D A 34 N1 ? ? C U 23 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C U 23 O4 ? ? ? 1_555 D A 34 N6 ? ? C U 23 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 24 N3 ? ? ? 1_555 D G 33 N1 ? ? C C 24 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 24 N4 ? ? ? 1_555 D G 33 O6 ? ? C C 24 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 24 O2 ? ? ? 1_555 D G 33 N2 ? ? C C 24 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 25 N3 ? ? ? 1_555 D A 32 N1 ? ? C U 25 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C U 25 O4 ? ? ? 1_555 D A 32 N6 ? ? C U 25 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C U 26 N3 ? ? ? 1_555 D A 31 N1 ? ? C U 26 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C U 26 O4 ? ? ? 1_555 D A 31 N6 ? ? C U 26 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 27 N3 ? ? ? 1_555 D G 30 N1 ? ? C C 27 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 27 N4 ? ? ? 1_555 D G 30 O6 ? ? C C 27 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 27 O2 ? ? ? 1_555 D G 30 N2 ? ? C C 27 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 28 N1 ? ? ? 1_555 D C 29 N3 ? ? C G 28 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 28 N2 ? ? ? 1_555 D C 29 O2 ? ? C G 28 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 28 O6 ? ? ? 1_555 D C 29 N4 ? ? C G 28 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 29 N3 ? ? ? 1_555 D G 28 N1 ? ? C C 29 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 29 N4 ? ? ? 1_555 D G 28 O6 ? ? C C 29 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 29 O2 ? ? ? 1_555 D G 28 N2 ? ? C C 29 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 30 N1 ? ? ? 1_555 D C 27 N3 ? ? C G 30 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 30 N2 ? ? ? 1_555 D C 27 O2 ? ? C G 30 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 30 O6 ? ? ? 1_555 D C 27 N4 ? ? C G 30 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C U 31 N3 ? ? ? 1_555 D A 26 N1 ? ? C U 31 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C U 31 O4 ? ? ? 1_555 D A 26 N6 ? ? C U 31 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C U 32 N3 ? ? ? 1_555 D A 25 N1 ? ? C U 32 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C U 32 O4 ? ? ? 1_555 D A 25 N6 ? ? C U 32 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 33 N3 ? ? ? 1_555 D G 24 N1 ? ? C C 33 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 33 N4 ? ? ? 1_555 D G 24 O6 ? ? C C 33 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 33 O2 ? ? ? 1_555 D G 24 N2 ? ? C C 33 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C U 34 N3 ? ? ? 1_555 D A 23 N1 ? ? C U 34 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C U 34 O4 ? ? ? 1_555 D A 23 N6 ? ? C U 34 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B A 1 N1 ? ? ? 1_555 D U 20 N3 ? ? D A 1 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B A 1 N6 ? ? ? 1_555 D U 20 O4 ? ? D A 1 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 2 N3 ? ? ? 1_555 D A 19 N1 ? ? D U 2 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 2 O4 ? ? ? 1_555 D A 19 N6 ? ? D U 2 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 3 N3 ? ? ? 1_555 D G 18 N1 ? ? D C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 3 N4 ? ? ? 1_555 D G 18 O6 ? ? D C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 3 O2 ? ? ? 1_555 D G 18 N2 ? ? D C 3 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B U 4 N3 ? ? ? 1_555 D A 17 N1 ? ? D U 4 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B U 4 O4 ? ? ? 1_555 D A 17 N6 ? ? D U 4 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 5 N3 ? ? ? 1_555 D A 16 N1 ? ? D U 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 5 O4 ? ? ? 1_555 D A 16 N6 ? ? D U 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 6 N3 ? ? ? 1_555 D G 15 N1 ? ? D C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 6 N4 ? ? ? 1_555 D G 15 O6 ? ? D C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 6 O2 ? ? ? 1_555 D G 15 N2 ? ? D C 6 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B U 7 N3 ? ? ? 1_555 D A 14 N1 ? ? D U 7 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B U 7 O4 ? ? ? 1_555 D A 14 N6 ? ? D U 7 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 8 N3 ? ? ? 1_555 D A 13 N1 ? ? D U 8 B A 13 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog87 hydrog ? ? B C 9 N3 ? ? ? 1_555 D G 12 N1 ? ? D C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 9 N4 ? ? ? 1_555 D G 12 O6 ? ? D C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 9 O2 ? ? ? 1_555 D G 12 N2 ? ? D C 9 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 10 N1 ? ? ? 1_555 D C 11 N3 ? ? D G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 10 N2 ? ? ? 1_555 D C 11 O2 ? ? D G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 10 O6 ? ? ? 1_555 D C 11 N4 ? ? D G 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B A 11 N1 ? ? ? 1_555 D U 10 N3 ? ? D A 11 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 11 N6 ? ? ? 1_555 D U 10 O4 ? ? D A 11 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 12 N3 ? ? ? 1_555 D A 9 N1 ? ? D U 12 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B U 12 O4 ? ? ? 1_555 D A 9 N6 ? ? D U 12 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B U 13 N3 ? ? ? 1_555 D A 8 N1 ? ? D U 13 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B U 13 O4 ? ? ? 1_555 D A 8 N6 ? ? D U 13 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 14 N3 ? ? ? 1_555 D A 7 N1 ? ? D U 14 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B U 14 O4 ? ? ? 1_555 D A 7 N6 ? ? D U 14 B A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B U 14 N3 ? ? ? 1_555 D A 8 N1 ? ? D U 14 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B U 14 O4 ? ? ? 1_555 D A 8 N6 ? ? D U 14 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 15 N3 ? ? ? 1_555 D G 6 N1 ? ? D C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 15 N4 ? ? ? 1_555 D G 6 O6 ? ? D C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 15 O2 ? ? ? 1_555 D G 6 N2 ? ? D C 15 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B U 16 N3 ? ? ? 1_555 D A 5 N1 ? ? D U 16 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B U 16 O4 ? ? ? 1_555 D A 5 N6 ? ? D U 16 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B U 17 N3 ? ? ? 1_555 D A 4 N1 ? ? D U 17 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B U 17 O4 ? ? ? 1_555 D A 4 N6 ? ? D U 17 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 18 N3 ? ? ? 1_555 D G 3 N1 ? ? D C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 18 N4 ? ? ? 1_555 D G 3 O6 ? ? D C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 18 O2 ? ? ? 1_555 D G 3 N2 ? ? D C 18 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B C 19 N3 ? ? ? 1_555 D G 2 N1 ? ? D C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B C 19 N4 ? ? ? 1_555 D G 2 O6 ? ? D C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B C 19 O2 ? ? ? 1_555 D G 2 N2 ? ? D C 19 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B U 23 N3 ? ? ? 1_555 D A 22 N1 ? ? D U 35 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B U 23 O4 ? ? ? 1_555 D A 22 N6 ? ? D U 35 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B C 24 N3 ? ? ? 1_555 D G 21 N1 ? ? D C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B C 24 N4 ? ? ? 1_555 D G 21 O6 ? ? D C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B C 24 O2 ? ? ? 1_555 D G 21 N2 ? ? D C 36 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9H83 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 P D A 1 ? ? "O3'" D C 36 ? ? 1.60 2 1 P C A 1 ? ? "O3'" C C 36 ? ? 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A G 3 ? ? "C4'" A G 3 ? ? "O4'" A G 3 ? ? 115.64 109.80 5.84 0.90 N 2 1 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.65 117.00 -3.35 0.50 N 3 1 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.02 117.70 3.32 0.50 N 4 1 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 113.20 118.60 -5.40 0.60 N 5 1 "O4'" A A 5 ? ? "C1'" A A 5 ? ? N9 A A 5 ? ? 112.81 108.50 4.31 0.70 N 6 1 C4 A A 5 ? ? C5 A A 5 ? ? C6 A A 5 ? ? 113.68 117.00 -3.32 0.50 N 7 1 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.02 117.70 3.32 0.50 N 8 1 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 113.11 118.60 -5.49 0.60 N 9 1 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 121.14 117.70 3.44 0.50 N 10 1 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 114.31 118.60 -4.29 0.60 N 11 1 C4 A A 8 ? ? C5 A A 8 ? ? C6 A A 8 ? ? 113.75 117.00 -3.25 0.50 N 12 1 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 121.01 117.70 3.31 0.50 N 13 1 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 113.64 118.60 -4.96 0.60 N 14 1 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.21 117.70 3.51 0.50 N 15 1 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 114.22 118.60 -4.38 0.60 N 16 1 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 112.97 108.50 4.47 0.70 N 17 1 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 117.37 121.90 -4.53 0.70 N 18 1 C5 A A 13 ? ? C6 A A 13 ? ? N1 A A 13 ? ? 121.05 117.70 3.35 0.50 N 19 1 N1 A A 13 ? ? C6 A A 13 ? ? N6 A A 13 ? ? 113.86 118.60 -4.74 0.60 N 20 1 C5 A A 14 ? ? C6 A A 14 ? ? N1 A A 14 ? ? 120.93 117.70 3.23 0.50 N 21 1 N1 A A 14 ? ? C6 A A 14 ? ? N6 A A 14 ? ? 114.58 118.60 -4.02 0.60 N 22 1 C4 A A 16 ? ? C5 A A 16 ? ? C6 A A 16 ? ? 113.91 117.00 -3.09 0.50 N 23 1 C5 A A 16 ? ? C6 A A 16 ? ? N1 A A 16 ? ? 121.09 117.70 3.39 0.50 N 24 1 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 113.79 118.60 -4.81 0.60 N 25 1 C5 D A 1 ? ? C6 D A 1 ? ? N1 D A 1 ? ? 121.24 117.70 3.54 0.50 N 26 1 N1 D A 1 ? ? C6 D A 1 ? ? N6 D A 1 ? ? 114.48 118.60 -4.12 0.60 N 27 1 "O4'" D C 3 ? ? "C1'" D C 3 ? ? N1 D C 3 ? ? 112.73 108.50 4.23 0.70 N 28 1 N3 D C 3 ? ? C2 D C 3 ? ? O2 D C 3 ? ? 117.20 121.90 -4.70 0.70 N 29 1 N3 D C 6 ? ? C2 D C 6 ? ? O2 D C 6 ? ? 117.29 121.90 -4.61 0.70 N 30 1 "O4'" D U 7 ? ? "C1'" D U 7 ? ? N1 D U 7 ? ? 113.09 108.50 4.59 0.70 N 31 1 "O4'" D U 8 ? ? "C1'" D U 8 ? ? N1 D U 8 ? ? 113.27 108.50 4.77 0.70 N 32 1 "O4'" D C 9 ? ? "C1'" D C 9 ? ? N1 D C 9 ? ? 113.98 108.50 5.48 0.70 N 33 1 C5 D A 11 ? ? C6 D A 11 ? ? N1 D A 11 ? ? 120.83 117.70 3.13 0.50 N 34 1 N1 D A 11 ? ? C6 D A 11 ? ? N6 D A 11 ? ? 114.51 118.60 -4.09 0.60 N 35 1 N3 D C 15 ? ? C2 D C 15 ? ? O2 D C 15 ? ? 117.38 121.90 -4.52 0.70 N 36 1 "O4'" D C 18 ? ? "C1'" D C 18 ? ? N1 D C 18 ? ? 114.05 108.50 5.55 0.70 N 37 1 N3 D C 18 ? ? C2 D C 18 ? ? O2 D C 18 ? ? 117.33 121.90 -4.57 0.70 N 38 1 "O4'" D C 19 ? ? "C1'" D C 19 ? ? N1 D C 19 ? ? 114.57 108.50 6.07 0.70 N 39 1 N3 D C 19 ? ? C2 D C 19 ? ? O2 D C 19 ? ? 117.05 121.90 -4.85 0.70 N 40 1 N3 D C 36 ? ? C2 D C 36 ? ? O2 D C 36 ? ? 117.32 121.90 -4.58 0.70 N 41 1 C4 C A 1 ? ? C5 C A 1 ? ? C6 C A 1 ? ? 113.99 117.00 -3.01 0.50 N 42 1 N1 C A 1 ? ? C6 C A 1 ? ? N6 C A 1 ? ? 113.73 118.60 -4.87 0.60 N 43 1 N3 C C 3 ? ? C2 C C 3 ? ? O2 C C 3 ? ? 117.17 121.90 -4.73 0.70 N 44 1 N3 C C 6 ? ? C2 C C 6 ? ? O2 C C 6 ? ? 117.28 121.90 -4.62 0.70 N 45 1 "O4'" C C 9 ? ? "C1'" C C 9 ? ? N1 C C 9 ? ? 113.59 108.50 5.09 0.70 N 46 1 N3 C C 9 ? ? C2 C C 9 ? ? O2 C C 9 ? ? 117.33 121.90 -4.57 0.70 N 47 1 C4 C A 11 ? ? C5 C A 11 ? ? C6 C A 11 ? ? 113.78 117.00 -3.22 0.50 N 48 1 C5 C A 11 ? ? C6 C A 11 ? ? N1 C A 11 ? ? 120.81 117.70 3.11 0.50 N 49 1 N1 C A 11 ? ? C6 C A 11 ? ? N6 C A 11 ? ? 113.43 118.60 -5.17 0.60 N 50 1 N3 C C 15 ? ? C2 C C 15 ? ? O2 C C 15 ? ? 117.43 121.90 -4.47 0.70 N 51 1 "O4'" C U 16 ? ? "C1'" C U 16 ? ? N1 C U 16 ? ? 113.11 108.50 4.61 0.70 N 52 1 "O4'" C U 17 ? ? "C1'" C U 17 ? ? N1 C U 17 ? ? 113.58 108.50 5.08 0.70 N 53 1 N3 C C 18 ? ? C2 C C 18 ? ? O2 C C 18 ? ? 117.26 121.90 -4.64 0.70 N 54 1 "O4'" C C 19 ? ? "C1'" C C 19 ? ? N1 C C 19 ? ? 114.17 108.50 5.67 0.70 N 55 1 C4 C A 20 ? ? C5 C A 20 ? ? C6 C A 20 ? ? 113.88 117.00 -3.12 0.50 N 56 1 C5 C A 20 ? ? C6 C A 20 ? ? N1 C A 20 ? ? 121.14 117.70 3.44 0.50 N 57 1 N1 C A 20 ? ? C6 C A 20 ? ? N6 C A 20 ? ? 113.36 118.60 -5.24 0.60 N 58 1 "C5'" C G 21 ? ? "C4'" C G 21 ? ? "O4'" C G 21 ? ? 116.86 109.80 7.06 0.90 N 59 1 "C1'" C G 21 ? ? "O4'" C G 21 ? ? "C4'" C G 21 ? ? 104.47 109.70 -5.23 0.70 N 60 1 "O4'" C G 21 ? ? "C1'" C G 21 ? ? N9 C G 21 ? ? 116.54 108.50 8.04 0.70 N 61 1 "O4'" C U 22 ? ? "C1'" C U 22 ? ? N1 C U 22 ? ? 112.94 108.50 4.44 0.70 N 62 1 N3 C C 24 ? ? C2 C C 24 ? ? O2 C C 24 ? ? 117.39 121.90 -4.51 0.70 N 63 1 N3 C C 27 ? ? C2 C C 27 ? ? O2 C C 27 ? ? 117.28 121.90 -4.62 0.70 N 64 1 N3 C C 29 ? ? C2 C C 29 ? ? O2 C C 29 ? ? 117.36 121.90 -4.54 0.70 N 65 1 N3 C C 33 ? ? C2 C C 33 ? ? O2 C C 33 ? ? 117.36 121.90 -4.54 0.70 N 66 1 N3 C C 36 ? ? C2 C C 36 ? ? O2 C C 36 ? ? 117.22 121.90 -4.68 0.70 N 67 1 C5 B A 4 ? ? C6 B A 4 ? ? N1 B A 4 ? ? 121.23 117.70 3.53 0.50 N 68 1 N1 B A 4 ? ? C6 B A 4 ? ? N6 B A 4 ? ? 114.03 118.60 -4.57 0.60 N 69 1 C5 B A 5 ? ? C6 B A 5 ? ? N1 B A 5 ? ? 121.12 117.70 3.42 0.50 N 70 1 N1 B A 5 ? ? C6 B A 5 ? ? N6 B A 5 ? ? 114.21 118.60 -4.39 0.60 N 71 1 C5 B A 7 ? ? C6 B A 7 ? ? N1 B A 7 ? ? 121.27 117.70 3.57 0.50 N 72 1 N1 B A 7 ? ? C6 B A 7 ? ? N6 B A 7 ? ? 114.35 118.60 -4.25 0.60 N 73 1 C4 B A 8 ? ? C5 B A 8 ? ? C6 B A 8 ? ? 113.49 117.00 -3.51 0.50 N 74 1 C5 B A 8 ? ? C6 B A 8 ? ? N1 B A 8 ? ? 120.99 117.70 3.29 0.50 N 75 1 N1 B A 8 ? ? C6 B A 8 ? ? N6 B A 8 ? ? 113.23 118.60 -5.37 0.60 N 76 1 C4 B A 9 ? ? C5 B A 9 ? ? C6 B A 9 ? ? 113.70 117.00 -3.30 0.50 N 77 1 C5 B A 9 ? ? C6 B A 9 ? ? N1 B A 9 ? ? 120.94 117.70 3.24 0.50 N 78 1 N1 B A 9 ? ? C6 B A 9 ? ? N6 B A 9 ? ? 112.99 118.60 -5.61 0.60 N 79 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.88 108.50 5.38 0.70 N 80 1 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 116.88 121.90 -5.02 0.70 N 81 1 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 115.12 108.50 6.62 0.70 N 82 1 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.62 117.00 -3.38 0.50 N 83 1 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.53 117.70 3.83 0.50 N 84 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.00 118.60 -5.60 0.60 N 85 1 "C5'" B A 14 ? ? "C4'" B A 14 ? ? "O4'" B A 14 ? ? 116.20 109.80 6.40 0.90 N 86 1 C5 B A 14 ? ? C6 B A 14 ? ? N1 B A 14 ? ? 120.72 117.70 3.02 0.50 N 87 1 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.76 117.00 -3.24 0.50 N 88 1 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 120.91 117.70 3.21 0.50 N 89 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.20 118.60 -5.40 0.60 N 90 1 C4 B A 17 ? ? C5 B A 17 ? ? C6 B A 17 ? ? 113.99 117.00 -3.01 0.50 N 91 1 C5 B A 17 ? ? C6 B A 17 ? ? N1 B A 17 ? ? 121.06 117.70 3.36 0.50 N 92 1 N1 B A 17 ? ? C6 B A 17 ? ? N6 B A 17 ? ? 113.56 118.60 -5.04 0.60 N 93 1 C5 B A 19 ? ? C6 B A 19 ? ? N1 B A 19 ? ? 120.80 117.70 3.10 0.50 N 94 1 N1 B A 19 ? ? C6 B A 19 ? ? N6 B A 19 ? ? 114.14 118.60 -4.46 0.60 N 95 1 "C3'" B U 20 ? ? "O3'" B U 20 ? ? P B G 21 ? ? 127.10 119.70 7.40 1.20 Y 96 1 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.80 117.00 -3.20 0.50 N 97 1 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 120.94 117.70 3.24 0.50 N 98 1 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 114.03 118.60 -4.57 0.60 N 99 1 C4 B A 23 ? ? C5 B A 23 ? ? C6 B A 23 ? ? 113.95 117.00 -3.05 0.50 N 100 1 C5 B A 23 ? ? C6 B A 23 ? ? N1 B A 23 ? ? 121.31 117.70 3.61 0.50 N 101 1 N1 B A 23 ? ? C6 B A 23 ? ? N6 B A 23 ? ? 113.95 118.60 -4.65 0.60 N 102 1 C4 B A 25 ? ? C5 B A 25 ? ? C6 B A 25 ? ? 113.79 117.00 -3.21 0.50 N 103 1 C5 B A 25 ? ? C6 B A 25 ? ? N1 B A 25 ? ? 121.11 117.70 3.41 0.50 N 104 1 N1 B A 25 ? ? C6 B A 25 ? ? N6 B A 25 ? ? 113.30 118.60 -5.30 0.60 N 105 1 C5 B A 26 ? ? C6 B A 26 ? ? N1 B A 26 ? ? 121.22 117.70 3.52 0.50 N 106 1 N1 B A 26 ? ? C6 B A 26 ? ? N6 B A 26 ? ? 114.40 118.60 -4.20 0.60 N 107 1 "O4'" B C 27 ? ? "C1'" B C 27 ? ? N1 B C 27 ? ? 113.28 108.50 4.78 0.70 N 108 1 N3 B C 27 ? ? C2 B C 27 ? ? O2 B C 27 ? ? 117.37 121.90 -4.53 0.70 N 109 1 "O4'" B C 29 ? ? "C1'" B C 29 ? ? N1 B C 29 ? ? 113.75 108.50 5.25 0.70 N 110 1 N3 B C 29 ? ? C2 B C 29 ? ? O2 B C 29 ? ? 117.53 121.90 -4.37 0.70 N 111 1 C5 B A 31 ? ? C6 B A 31 ? ? N1 B A 31 ? ? 121.43 117.70 3.73 0.50 N 112 1 N1 B A 31 ? ? C6 B A 31 ? ? N6 B A 31 ? ? 114.55 118.60 -4.05 0.60 N 113 1 C4 B A 32 ? ? C5 B A 32 ? ? C6 B A 32 ? ? 113.81 117.00 -3.19 0.50 N 114 1 C5 B A 32 ? ? C6 B A 32 ? ? N1 B A 32 ? ? 121.10 117.70 3.40 0.50 N 115 1 N1 B A 32 ? ? C6 B A 32 ? ? N6 B A 32 ? ? 113.92 118.60 -4.68 0.60 N 116 1 C5 B A 34 ? ? C6 B A 34 ? ? N1 B A 34 ? ? 120.97 117.70 3.27 0.50 N 117 1 N1 B A 34 ? ? C6 B A 34 ? ? N6 B A 34 ? ? 114.11 118.60 -4.49 0.60 N 118 1 "O4'" B A 35 ? ? "C1'" B A 35 ? ? N9 B A 35 ? ? 112.77 108.50 4.27 0.70 N 119 1 N1 B A 35 ? ? C6 B A 35 ? ? N6 B A 35 ? ? 113.43 118.60 -5.17 0.60 N 120 1 N3 B C 36 ? ? C2 B C 36 ? ? O2 B C 36 ? ? 117.13 121.90 -4.77 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 2 ? ? 0.055 'SIDE CHAIN' 2 1 A A 14 ? ? 0.069 'SIDE CHAIN' 3 1 G A 15 ? ? 0.076 'SIDE CHAIN' 4 1 A D 1 ? ? 0.076 'SIDE CHAIN' 5 1 C D 9 ? ? 0.081 'SIDE CHAIN' 6 1 G D 10 ? ? 0.111 'SIDE CHAIN' 7 1 A D 11 ? ? 0.073 'SIDE CHAIN' 8 1 C D 36 ? ? 0.070 'SIDE CHAIN' 9 1 A C 1 ? ? 0.116 'SIDE CHAIN' 10 1 U C 4 ? ? 0.065 'SIDE CHAIN' 11 1 C C 9 ? ? 0.076 'SIDE CHAIN' 12 1 U C 12 ? ? 0.062 'SIDE CHAIN' 13 1 U C 17 ? ? 0.070 'SIDE CHAIN' 14 1 C C 19 ? ? 0.065 'SIDE CHAIN' 15 1 A C 20 ? ? 0.082 'SIDE CHAIN' 16 1 U C 22 ? ? 0.079 'SIDE CHAIN' 17 1 U C 23 ? ? 0.067 'SIDE CHAIN' 18 1 U C 26 ? ? 0.064 'SIDE CHAIN' 19 1 C C 27 ? ? 0.059 'SIDE CHAIN' 20 1 C C 29 ? ? 0.092 'SIDE CHAIN' 21 1 G B 3 ? ? 0.154 'SIDE CHAIN' 22 1 A B 4 ? ? 0.073 'SIDE CHAIN' 23 1 C B 11 ? ? 0.078 'SIDE CHAIN' 24 1 A B 14 ? ? 0.060 'SIDE CHAIN' 25 1 G B 18 ? ? 0.070 'SIDE CHAIN' 26 1 A B 19 ? ? 0.097 'SIDE CHAIN' 27 1 A B 22 ? ? 0.050 'SIDE CHAIN' 28 1 A B 23 ? ? 0.094 'SIDE CHAIN' 29 1 G B 28 ? ? 0.079 'SIDE CHAIN' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9H83 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 275 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol OTHER # _em_3d_reconstruction.entry_id 9H83 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 7.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 48761 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Dimer intermediate class 2 composed of 2 circular RNA and 2 complimentary RNA' _em_entity_assembly.details 'Dimer prepared by annealing' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2 # _em_imaging.entry_id 9H83 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_vitrification.entry_id 9H83 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 10 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9H83 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A A 17 ? A A 17 2 1 Y 1 A G 18 ? A G 18 3 1 Y 1 A A 19 ? A A 19 4 1 Y 1 A U 20 ? A U 20 5 1 Y 1 A G 21 ? A G 21 6 1 Y 1 A A 22 ? A A 22 7 1 Y 1 A A 23 ? A A 23 8 1 Y 1 A G 24 ? A G 24 9 1 Y 1 A A 25 ? A A 25 10 1 Y 1 A A 26 ? A A 26 11 1 Y 1 A C 27 ? A C 27 12 1 Y 1 A G 28 ? A G 28 13 1 Y 1 A C 29 ? A C 29 14 1 Y 1 A G 30 ? A G 30 15 1 Y 1 A A 31 ? A A 31 16 1 Y 1 A A 32 ? A A 32 17 1 Y 1 A G 33 ? A G 33 18 1 Y 1 A A 34 ? A A 34 19 1 Y 1 A A 35 ? A A 35 20 1 Y 1 A C 36 ? A C 36 21 1 Y 1 D A 32 ? B A 20 22 1 Y 1 D G 33 ? B G 21 23 1 Y 1 D U 34 ? B U 22 24 1 Y 1 D U 37 ? B U 25 25 1 Y 1 D U 38 ? B U 26 26 1 Y 1 D C 39 ? B C 27 27 1 Y 1 D G 40 ? B G 28 28 1 Y 1 D C 41 ? B C 29 29 1 Y 1 D G 42 ? B G 30 30 1 Y 1 D U 43 ? B U 31 31 1 Y 1 D U 44 ? B U 32 32 1 Y 1 D C 45 ? B C 33 33 1 Y 1 D U 46 ? B U 34 34 1 Y 1 D U 47 ? B U 35 35 1 Y 1 D C 48 ? B C 36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-28 _em_admin.deposition_site PDBE _em_admin.entry_id 9H83 _em_admin.last_update 2025-06-25 _em_admin.map_release_date 2024-12-04 _em_admin.title 'Small circular RNA dimer - Class 2' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 6820 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 668921 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.5.3 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.5.3 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.6.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? cryoSPARC 4.5.3 RECONSTRUCTION NU-refinement 12 1 ? ? cryoSPARC 4.5.3 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.21.2-5419 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9H83 'double helix' 9H83 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 C C 19 1_555 -2.749 0.544 -0.371 1.454 -1.913 33.137 1 A_G2:C19_C A 2 ? C 19 ? ? 1 1 A G 3 1_555 C C 18 1_555 -0.606 -0.221 -0.519 -9.471 -8.309 0.958 2 A_G3:C18_C A 3 ? C 18 ? 19 1 1 A A 4 1_555 C U 17 1_555 -0.051 0.090 -0.800 -29.240 -9.138 8.174 3 A_A4:U17_C A 4 ? C 17 ? 20 1 1 A A 5 1_555 C U 16 1_555 -0.027 0.018 0.043 -3.354 -0.813 5.269 4 A_A5:U16_C A 5 ? C 16 ? 20 1 1 A G 6 1_555 C C 15 1_555 -0.316 -0.109 0.005 8.854 -11.001 1.152 5 A_G6:C15_C A 6 ? C 15 ? 19 1 1 A A 7 1_555 C U 14 1_555 -0.004 -0.123 -1.169 -21.366 -12.570 1.908 6 A_A7:U14_C A 7 ? C 14 ? 20 1 1 A A 8 1_555 C U 13 1_555 -0.087 -0.020 -0.920 -26.017 -8.894 2.740 7 A_A8:U13_C A 8 ? C 13 ? 20 1 1 A A 9 1_555 C U 12 1_555 0.127 -0.081 -1.023 -16.741 -19.294 -1.085 8 A_A9:U12_C A 9 ? C 12 ? 20 1 1 A U 10 1_555 C A 11 1_555 0.147 -0.033 -0.133 -0.363 -10.634 4.917 9 A_U10:A11_C A 10 ? C 11 ? 20 1 1 A C 11 1_555 C G 10 1_555 0.322 -0.118 -0.215 10.500 -10.250 -0.235 10 A_C11:G10_C A 11 ? C 10 ? 19 1 1 A G 12 1_555 C C 9 1_555 -0.402 -0.148 -0.191 -10.189 -25.538 3.628 11 A_G12:C9_C A 12 ? C 9 ? 19 1 1 A A 13 1_555 C U 8 1_555 0.202 0.035 -0.873 -24.767 -10.516 -1.452 12 A_A13:U8_C A 13 ? C 8 ? 20 1 1 A A 14 1_555 C U 7 1_555 -0.236 -0.082 -0.627 -14.822 -18.585 0.090 13 A_A14:U7_C A 14 ? C 7 ? 20 1 1 A G 15 1_555 C C 6 1_555 -0.475 -0.169 -0.257 -12.920 -13.996 -1.718 14 A_G15:C6_C A 15 ? C 6 ? 19 1 1 A A 16 1_555 C U 5 1_555 0.145 0.012 -1.032 -25.492 -23.124 0.419 15 A_A16:U5_C A 16 ? C 5 ? 20 1 1 C G 21 1_555 D C 36 1_555 -0.344 0.097 -0.820 -35.473 -33.907 10.463 16 C_G21:C36_B C 21 ? B 36 ? 19 1 1 C U 22 1_555 D A 35 1_555 0.033 0.135 0.526 -41.870 -20.487 7.033 17 C_U22:A35_B C 22 ? B 35 ? 20 1 1 C U 23 1_555 D A 34 1_555 -0.064 -0.225 -0.740 -24.357 -25.763 6.771 18 C_U23:A34_B C 23 ? B 34 ? 20 1 1 C C 24 1_555 D G 33 1_555 0.145 -0.096 -0.263 -8.939 -7.334 -0.082 19 C_C24:G33_B C 24 ? B 33 ? 19 1 1 C U 25 1_555 D A 32 1_555 -0.016 0.003 -0.510 21.264 -3.404 -0.561 20 C_U25:A32_B C 25 ? B 32 ? 20 1 1 C U 26 1_555 D A 31 1_555 -0.307 0.185 -1.088 38.787 -10.805 -6.885 21 C_U26:A31_B C 26 ? B 31 ? 20 1 1 C C 27 1_555 D G 30 1_555 0.440 -0.178 -0.530 15.123 -12.326 -1.173 22 C_C27:G30_B C 27 ? B 30 ? 19 1 1 C G 28 1_555 D C 29 1_555 -0.488 -0.149 -0.170 -10.256 -16.004 1.854 23 C_G28:C29_B C 28 ? B 29 ? 19 1 1 C C 29 1_555 D G 28 1_555 0.622 -0.277 -0.143 -5.262 -15.350 -1.248 24 C_C29:G28_B C 29 ? B 28 ? 19 1 1 C G 30 1_555 D C 27 1_555 -0.249 -0.033 -0.402 -21.869 -18.361 1.825 25 C_G30:C27_B C 30 ? B 27 ? 19 1 1 C U 31 1_555 D A 26 1_555 -0.083 -0.021 -0.319 1.782 -12.484 -2.586 26 C_U31:A26_B C 31 ? B 26 ? 20 1 1 C U 32 1_555 D A 25 1_555 -0.151 0.090 -0.610 26.308 -11.644 1.617 27 C_U32:A25_B C 32 ? B 25 ? 20 1 1 C C 33 1_555 D G 24 1_555 0.559 -0.033 -1.097 36.902 -22.653 6.345 28 C_C33:G24_B C 33 ? B 24 ? 19 1 1 C U 34 1_555 D A 23 1_555 -0.055 -0.015 -1.024 23.610 -16.733 0.327 29 C_U34:A23_B C 34 ? B 23 ? 20 1 1 B U 23 1_555 D A 22 1_555 -0.230 -0.144 1.044 -21.853 -13.149 -2.161 30 D_U35:A22_B D 35 ? B 22 ? 20 1 1 B C 24 1_555 D G 21 1_555 0.479 -0.189 -0.290 -2.207 -15.965 0.815 31 D_C36:G21_B D 36 ? B 21 ? 19 1 1 B A 1 1_555 D U 20 1_555 0.075 -0.021 -0.023 1.033 -3.673 -3.825 32 D_A1:U20_B D 1 ? B 20 ? 20 1 1 B U 2 1_555 D A 19 1_555 0.206 -0.097 -0.389 6.771 -17.430 2.155 33 D_U2:A19_B D 2 ? B 19 ? 20 1 1 B C 3 1_555 D G 18 1_555 0.522 -0.196 0.235 -8.989 -14.919 0.291 34 D_C3:G18_B D 3 ? B 18 ? 19 1 1 B U 4 1_555 D A 17 1_555 -0.020 -0.032 -0.161 3.596 -10.534 0.921 35 D_U4:A17_B D 4 ? B 17 ? 20 1 1 B U 5 1_555 D A 16 1_555 -0.044 0.043 -0.705 24.927 -13.900 5.120 36 D_U5:A16_B D 5 ? B 16 ? 20 1 1 B C 6 1_555 D G 15 1_555 0.312 -0.088 -0.540 22.230 -7.883 -2.019 37 D_C6:G15_B D 6 ? B 15 ? 19 1 1 B U 7 1_555 D A 14 1_555 0.523 -0.282 -0.630 9.903 -23.535 1.128 38 D_U7:A14_B D 7 ? B 14 ? 20 1 1 B U 8 1_555 D A 13 1_555 -0.334 0.507 0.215 -5.687 -3.459 20.070 39 D_U8:A13_B D 8 ? B 13 ? ? 1 1 B C 9 1_555 D G 12 1_555 0.273 -0.105 -0.524 10.196 -14.752 1.920 40 D_C9:G12_B D 9 ? B 12 ? 19 1 1 B G 10 1_555 D C 11 1_555 -0.813 -0.282 -0.251 -10.406 -2.962 -0.743 41 D_G10:C11_B D 10 ? B 11 ? 19 1 1 B A 11 1_555 D U 10 1_555 -0.066 -0.016 -0.657 -23.732 -13.217 -0.099 42 D_A11:U10_B D 11 ? B 10 ? 20 1 1 B U 12 1_555 D A 9 1_555 0.156 -0.001 0.317 -5.495 -5.646 7.474 43 D_U12:A9_B D 12 ? B 9 ? 20 1 1 B U 13 1_555 D A 8 1_555 -0.063 0.093 -0.546 28.612 -11.637 4.734 44 D_U13:A8_B D 13 ? B 8 ? 20 1 1 B U 14 1_555 D A 7 1_555 0.034 -0.051 -1.088 27.061 -14.613 -1.619 45 D_U14:A7_B D 14 ? B 7 ? 20 1 1 B C 15 1_555 D G 6 1_555 0.394 -0.160 -0.126 -1.864 -17.848 1.309 46 D_C15:G6_B D 15 ? B 6 ? 19 1 1 B U 16 1_555 D A 5 1_555 0.068 -0.062 0.199 -6.562 -15.456 0.135 47 D_U16:A5_B D 16 ? B 5 ? 20 1 1 B U 17 1_555 D A 4 1_555 0.062 -0.098 -0.531 5.805 -22.629 0.308 48 D_U17:A4_B D 17 ? B 4 ? 20 1 1 B C 18 1_555 D G 3 1_555 0.636 -0.248 0.022 -2.359 -18.454 -0.450 49 D_C18:G3_B D 18 ? B 3 ? 19 1 1 B C 19 1_555 D G 2 1_555 0.317 -0.108 0.181 -5.248 -5.985 -1.056 50 D_C19:G2_B D 19 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 C C 19 1_555 A G 3 1_555 C C 18 1_555 -1.591 -2.115 3.658 0.093 2.931 31.104 -4.532 2.975 3.444 5.451 -0.174 31.238 1 AA_G2G3:C18C19_CC A 2 ? C 19 ? A 3 ? C 18 ? 1 A G 3 1_555 C C 18 1_555 A A 4 1_555 C U 17 1_555 1.315 -2.748 4.009 7.269 12.153 31.280 -6.810 -0.949 2.991 21.229 -12.699 34.263 2 AA_G3A4:U17C18_CC A 3 ? C 18 ? A 4 ? C 17 ? 1 A A 4 1_555 C U 17 1_555 A A 5 1_555 C U 16 1_555 -0.241 -1.573 2.764 -4.461 1.506 21.784 -4.543 -0.776 2.646 3.927 11.629 22.281 3 AA_A4A5:U16U17_CC A 4 ? C 17 ? A 5 ? C 16 ? 1 A A 5 1_555 C U 16 1_555 A G 6 1_555 C C 15 1_555 -0.595 -2.192 3.000 -0.591 5.397 22.561 -7.024 1.308 2.431 13.543 1.482 23.197 4 AA_A5G6:C15U16_CC A 5 ? C 16 ? A 6 ? C 15 ? 1 A G 6 1_555 C C 15 1_555 A A 7 1_555 C U 14 1_555 -0.612 -2.165 3.998 2.578 28.216 33.025 -5.692 1.082 1.675 41.436 -3.786 43.255 5 AA_G6A7:U14C15_CC A 6 ? C 15 ? A 7 ? C 14 ? 1 A A 7 1_555 C U 14 1_555 A A 8 1_555 C U 13 1_555 0.094 -1.194 3.571 -2.879 19.501 31.204 -4.542 -0.540 2.420 32.509 4.800 36.778 6 AA_A7A8:U13U14_CC A 7 ? C 14 ? A 8 ? C 13 ? 1 A A 8 1_555 C U 13 1_555 A A 9 1_555 C U 12 1_555 -0.615 -0.580 3.291 2.318 10.040 30.072 -2.853 1.539 2.898 18.673 -4.312 31.750 7 AA_A8A9:U12U13_CC A 8 ? C 13 ? A 9 ? C 12 ? 1 A A 9 1_555 C U 12 1_555 A U 10 1_555 C A 11 1_555 1.366 -1.006 2.891 -4.923 9.049 29.150 -3.307 -3.337 2.231 17.312 9.418 30.879 8 AA_A9U10:A11U12_CC A 9 ? C 12 ? A 10 ? C 11 ? 1 A U 10 1_555 C A 11 1_555 A C 11 1_555 C G 10 1_555 -0.562 -1.914 3.039 0.244 11.192 26.124 -5.998 1.191 2.056 23.438 -0.511 28.383 9 AA_U10C11:G10A11_CC A 10 ? C 11 ? A 11 ? C 10 ? 1 A C 11 1_555 C G 10 1_555 A G 12 1_555 C C 9 1_555 0.484 -1.602 3.580 0.937 20.628 33.659 -4.761 -0.610 2.275 32.146 -1.461 39.331 10 AA_C11G12:C9G10_CC A 11 ? C 10 ? A 12 ? C 9 ? 1 A G 12 1_555 C C 9 1_555 A A 13 1_555 C U 8 1_555 -1.441 -1.928 3.473 -0.581 26.319 30.314 -5.441 2.052 1.439 41.800 0.923 39.946 11 AA_G12A13:U8C9_CC A 12 ? C 9 ? A 13 ? C 8 ? 1 A A 13 1_555 C U 8 1_555 A A 14 1_555 C U 7 1_555 0.087 -0.909 3.147 -0.327 8.374 29.056 -3.315 -0.229 2.781 16.268 0.635 30.215 12 AA_A13A14:U7U8_CC A 13 ? C 8 ? A 14 ? C 7 ? 1 A A 14 1_555 C U 7 1_555 A G 15 1_555 C C 6 1_555 -0.373 -0.771 3.138 -6.580 10.853 31.790 -2.919 -0.340 2.757 18.898 11.458 34.169 13 AA_A14G15:C6U7_CC A 14 ? C 7 ? A 15 ? C 6 ? 1 A G 15 1_555 C C 6 1_555 A A 16 1_555 C U 5 1_555 0.345 -0.912 3.743 5.151 20.485 32.243 -4.160 0.172 2.732 32.857 -8.263 38.392 14 AA_G15A16:U5C6_CC A 15 ? C 6 ? A 16 ? C 5 ? 1 C G 21 1_555 D C 36 1_555 C U 22 1_555 D A 35 1_555 -0.256 -1.280 3.558 -6.351 11.261 32.411 -3.912 -0.572 2.960 19.247 10.855 34.830 15 CC_G21U22:A35C36_BB C 21 ? B 36 ? C 22 ? B 35 ? 1 C U 22 1_555 D A 35 1_555 C U 23 1_555 D A 34 1_555 -0.884 0.081 2.878 7.386 9.635 31.099 -1.231 2.593 2.522 17.173 -13.164 33.330 16 CC_U22U23:A34A35_BB C 22 ? B 35 ? C 23 ? B 34 ? 1 C U 23 1_555 D A 34 1_555 C C 24 1_555 D G 33 1_555 0.267 1.105 3.200 -7.867 14.297 29.676 -0.527 -1.796 3.217 25.620 14.097 33.778 17 CC_U23C24:G33A34_BB C 23 ? B 34 ? C 24 ? B 33 ? 1 C C 24 1_555 D G 33 1_555 C U 25 1_555 D A 32 1_555 0.374 0.066 2.926 -0.792 7.072 24.956 -1.605 -1.031 2.823 15.956 1.788 25.936 18 CC_C24U25:A32G33_BB C 24 ? B 33 ? C 25 ? B 32 ? 1 C U 25 1_555 D A 32 1_555 C U 26 1_555 D A 31 1_555 -0.582 -1.059 3.224 0.726 11.164 26.982 -4.347 1.302 2.575 22.726 -1.477 29.169 19 CC_U25U26:A31A32_BB C 25 ? B 32 ? C 26 ? B 31 ? 1 C U 26 1_555 D A 31 1_555 C C 27 1_555 D G 30 1_555 0.037 -1.676 4.138 -3.627 17.893 34.210 -5.069 -0.570 2.922 28.078 5.691 38.648 20 CC_U26C27:G30A31_BB C 26 ? B 31 ? C 27 ? B 30 ? 1 C C 27 1_555 D G 30 1_555 C G 28 1_555 D C 29 1_555 0.643 -1.390 3.850 -0.823 13.585 34.074 -4.266 -1.148 3.076 22.119 1.341 36.617 21 CC_C27G28:C29G30_BB C 27 ? B 30 ? C 28 ? B 29 ? 1 C G 28 1_555 D C 29 1_555 C C 29 1_555 D G 28 1_555 -0.585 -0.810 3.121 0.699 1.194 37.772 -1.397 0.989 3.084 1.844 -1.079 37.797 22 CC_G28C29:G28C29_BB C 28 ? B 29 ? C 29 ? B 28 ? 1 C C 29 1_555 D G 28 1_555 C G 30 1_555 D C 27 1_555 1.111 -1.247 3.584 4.892 18.421 32.107 -4.476 -1.072 2.648 30.214 -8.023 37.209 23 CC_C29G30:C27G28_BB C 29 ? B 28 ? C 30 ? B 27 ? 1 C G 30 1_555 D C 27 1_555 C U 31 1_555 D A 26 1_555 -0.740 -0.622 2.771 -2.274 6.367 27.816 -2.465 1.067 2.617 13.002 4.644 28.610 24 CC_G30U31:A26C27_BB C 30 ? B 27 ? C 31 ? B 26 ? 1 C U 31 1_555 D A 26 1_555 C U 32 1_555 D A 25 1_555 0.237 -0.852 2.929 -1.260 7.898 23.227 -4.081 -0.888 2.492 18.911 3.016 24.547 25 CC_U31U32:A25A26_BB C 31 ? B 26 ? C 32 ? B 25 ? 1 C U 32 1_555 D A 25 1_555 C C 33 1_555 D G 24 1_555 -0.773 -1.073 3.247 1.379 17.158 24.793 -5.195 1.739 2.047 35.073 -2.818 30.105 26 CC_U32C33:G24A25_BB C 32 ? B 25 ? C 33 ? B 24 ? 1 C C 33 1_555 D G 24 1_555 C U 34 1_555 D A 23 1_555 -0.633 -0.599 3.682 2.735 21.782 32.450 -3.729 1.304 2.712 34.496 -4.332 39.012 27 CC_C33U34:A23G24_BB C 33 ? B 24 ? C 34 ? B 23 ? 1 C U 34 1_555 D A 23 1_555 B U 23 1_555 D A 22 1_555 0.663 -2.441 4.293 -12.728 11.005 31.629 -5.830 -3.222 2.851 18.632 21.550 35.725 28 CD_U34U35:A22A23_BB C 34 ? B 23 ? D 35 ? B 22 ? 1 B U 23 1_555 D A 22 1_555 B C 24 1_555 D G 21 1_555 -1.602 -0.642 2.720 8.509 -10.894 36.779 0.096 3.210 2.394 -16.565 -12.938 39.207 29 DD_U35C36:G21A22_BB D 35 ? B 22 ? D 36 ? B 21 ? 1 B C 24 1_555 D G 21 1_555 B A 1 1_555 D U 20 1_555 -0.377 -0.766 3.129 -3.218 15.732 26.422 -4.212 0.141 2.344 31.041 6.349 30.844 30 DD_C36A1:U20G21_BB D 36 ? B 21 ? D 1 ? B 20 ? 1 B A 1 1_555 D U 20 1_555 B U 2 1_555 D A 19 1_555 0.681 -0.768 3.056 3.269 14.037 33.210 -3.027 -0.682 2.587 23.245 -5.414 36.122 31 DD_A1U2:A19U20_BB D 1 ? B 20 ? D 2 ? B 19 ? 1 B U 2 1_555 D A 19 1_555 B C 3 1_555 D G 18 1_555 0.570 -2.057 3.437 1.124 17.997 32.101 -5.482 -0.767 2.053 29.793 -1.860 36.702 32 DD_U2C3:G18A19_BB D 2 ? B 19 ? D 3 ? B 18 ? 1 B C 3 1_555 D G 18 1_555 B U 4 1_555 D A 17 1_555 -0.080 -1.343 2.884 3.759 5.610 28.420 -3.692 0.847 2.546 11.226 -7.524 29.195 33 DD_C3U4:A17G18_BB D 3 ? B 18 ? D 4 ? B 17 ? 1 B U 4 1_555 D A 17 1_555 B U 5 1_555 D A 16 1_555 0.361 -0.840 2.823 2.971 4.228 25.413 -2.864 -0.107 2.674 9.486 -6.667 25.924 34 DD_U4U5:A16A17_BB D 4 ? B 17 ? D 5 ? B 16 ? 1 B U 5 1_555 D A 16 1_555 B C 6 1_555 D G 15 1_555 -0.869 -1.602 3.458 -3.101 17.960 33.751 -4.610 0.953 2.404 28.501 4.921 38.231 35 DD_U5C6:G15A16_BB D 5 ? B 16 ? D 6 ? B 15 ? 1 B C 6 1_555 D G 15 1_555 B U 7 1_555 D A 14 1_555 0.902 -1.072 3.366 5.475 12.665 35.851 -3.215 -0.689 2.937 19.699 -8.516 38.333 36 DD_C6U7:A14G15_BB D 6 ? B 15 ? D 7 ? B 14 ? 1 B U 7 1_555 D A 14 1_555 B U 8 1_555 D A 13 1_555 2.641 -2.663 3.477 3.428 5.216 26.139 -7.124 -4.771 3.209 11.328 -7.445 26.861 37 DD_U7U8:A13A14_BB D 7 ? B 14 ? D 8 ? B 13 ? 1 B U 8 1_555 D A 13 1_555 B C 9 1_555 D G 12 1_555 -3.024 -1.891 2.781 4.010 -1.273 17.795 -5.405 11.240 2.180 -4.041 -12.733 18.281 38 DD_U8C9:G12A13_BB D 8 ? B 13 ? D 9 ? B 12 ? 1 B C 9 1_555 D G 12 1_555 B G 10 1_555 D C 11 1_555 -0.684 -1.558 3.494 -8.942 21.556 38.331 -3.993 0.095 2.428 29.717 12.327 44.647 39 DD_C9G10:C11G12_BB D 9 ? B 12 ? D 10 ? B 11 ? 1 B G 10 1_555 D C 11 1_555 B A 11 1_555 D U 10 1_555 -0.600 -2.178 3.630 2.445 13.504 28.177 -6.489 1.556 2.310 25.885 -4.687 31.281 40 DD_G10A11:U10C11_BB D 10 ? B 11 ? D 11 ? B 10 ? 1 B A 11 1_555 D U 10 1_555 B U 12 1_555 D A 9 1_555 0.168 -0.980 2.888 -7.679 4.451 32.127 -2.346 -1.392 2.624 7.857 13.555 33.299 41 DD_A11U12:A9U10_BB D 11 ? B 10 ? D 12 ? B 9 ? 1 B U 12 1_555 D A 9 1_555 B U 13 1_555 D A 8 1_555 -0.310 -1.050 2.504 4.375 0.523 24.550 -2.549 1.705 2.390 1.218 -10.184 24.937 42 DD_U12U13:A8A9_BB D 12 ? B 9 ? D 13 ? B 8 ? 1 B U 13 1_555 D A 8 1_555 B U 14 1_555 D A 7 1_555 -1.663 -1.458 3.317 -2.110 17.876 29.238 -5.054 2.520 2.201 31.889 3.764 34.231 43 DD_U13U14:A7A8_BB D 13 ? B 8 ? D 14 ? B 7 ? 1 B U 14 1_555 D A 7 1_555 B C 15 1_555 D G 6 1_555 0.382 -2.046 3.834 -3.469 25.617 34.416 -5.317 -0.863 1.891 37.460 5.073 42.807 44 DD_U14C15:G6A7_BB D 14 ? B 7 ? D 15 ? B 6 ? 1 B C 15 1_555 D G 6 1_555 B U 16 1_555 D A 5 1_555 0.035 -2.014 3.155 0.380 15.344 27.467 -6.062 -0.006 1.804 29.569 -0.732 31.392 45 DD_C15U16:A5G6_BB D 15 ? B 6 ? D 16 ? B 5 ? 1 B U 16 1_555 D A 5 1_555 B U 17 1_555 D A 4 1_555 -0.189 -0.602 2.801 6.748 7.110 31.692 -2.052 1.276 2.519 12.646 -12.002 33.136 46 DD_U16U17:A4A5_BB D 16 ? B 5 ? D 17 ? B 4 ? 1 B U 17 1_555 D A 4 1_555 B C 18 1_555 D G 3 1_555 0.842 -0.534 3.350 2.061 11.029 36.157 -2.258 -1.032 3.103 17.266 -3.227 37.802 47 DD_U17C18:G3A4_BB D 17 ? B 4 ? D 18 ? B 3 ? 1 B C 18 1_555 D G 3 1_555 B C 19 1_555 D G 2 1_555 1.131 -1.505 3.248 3.832 -0.797 33.856 -2.439 -1.311 3.386 -1.362 -6.552 34.075 48 DD_C18C19:G2G3_BB D 18 ? B 3 ? D 19 ? B 2 ? # _pdbx_audit_support.funding_organization 'Novo Nordisk Foundation' _pdbx_audit_support.country Denmark _pdbx_audit_support.grant_number NNF21OC0070452 _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9H83 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #