HEADER RNA BINDING PROTEIN 08-NOV-24 9HBU TITLE TILV-NP TETRAMER (PSEUDO-C2) (LOCAL REFINEMENT AROUND 2 TILV-NPS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TILAPIA LAKE VIRUS NUCLEOPROTEIN (SEGMENT 4); COMPND 3 CHAIN: C, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 40-MER VRNA LOOP; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE RNA SEQUENCE (40-MER VRNA LOOP) IS 5' - PGCA AAU COMPND 10 CUU UCU CAC GUC CUG ACU UGU GAG UAA AAU UUG G - 3'. DUE TO THE COMPND 11 INABILITY TO PRECISELY DEFINE BASES, THE EXACT NUCLEOTIDE REGISTER COMPND 12 REMAINS ELUSIVE. THUS, IN THE MODELLING, GENERIC PURINES (P5P) AND COMPND 13 GENERIC PYRIMIDINES (Y5P) WERE ASSIGNED BASED ON APPARENT BASE SIZE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TILAPIA LAKE VIRUS; SOURCE 3 ORGANISM_TAXID: 1549864; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: TILAPIA LAKE VIRUS; SOURCE 9 ORGANISM_TAXID: 1549864 KEYWDS VIRAL PROTEIN, NUCLEOPROTEIN, OLIGOMER, RNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR B.ARRAGAIN,S.CUSACK REVDAT 1 12-MAR-25 9HBU 0 JRNL AUTH B.ARRAGAIN,M.PELOSSE,K.HUARD,S.CUSACK JRNL TITL STRUCTURE OF THE TILAPIA LAKE VIRUS NUCLEOPROTEIN BOUND TO JRNL TITL 2 RNA. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 39995042 JRNL DOI 10.1093/NAR/GKAF112 REMARK 2 REMARK 2 RESOLUTION. 3.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, UCSF CHIMERA, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.510 REMARK 3 NUMBER OF PARTICLES : 176605 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9HBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1292142693. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TILV-NP BOUND TO THE 40-MER REMARK 245 VRNA LOOP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 ARG C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 LYS C 6 REMARK 465 THR C 7 REMARK 465 SER C 8 REMARK 465 MET C 9 REMARK 465 ALA C 10 REMARK 465 ALA C 11 REMARK 465 ALA C 12 REMARK 465 SER C 13 REMARK 465 THR C 14 REMARK 465 VAL C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 GLU C 18 REMARK 465 VAL C 19 REMARK 465 ALA C 20 REMARK 465 MET C 21 REMARK 465 ASP C 22 REMARK 465 GLU C 23 REMARK 465 GLY C 24 REMARK 465 SER C 25 REMARK 465 PRO C 26 REMARK 465 SER C 27 REMARK 465 THR C 28 REMARK 465 SER C 29 REMARK 465 GLN C 30 REMARK 465 ALA C 31 REMARK 465 GLN C 32 REMARK 465 VAL C 33 REMARK 465 THR C 290 REMARK 465 GLY C 291 REMARK 465 SER C 292 REMARK 465 CYS C 293 REMARK 465 PHE C 294 REMARK 465 LEU C 295 REMARK 465 VAL C 296 REMARK 465 VAL C 297 REMARK 465 ALA C 298 REMARK 465 SER C 299 REMARK 465 HIS C 300 REMARK 465 GLY C 301 REMARK 465 LEU C 302 REMARK 465 SER C 303 REMARK 465 ALA C 304 REMARK 465 ILE C 305 REMARK 465 ALA C 306 REMARK 465 ASP C 307 REMARK 465 SER C 308 REMARK 465 ARG C 309 REMARK 465 ILE C 310 REMARK 465 GLU C 311 REMARK 465 GLY C 312 REMARK 465 THR C 313 REMARK 465 GLY C 314 REMARK 465 ASN C 315 REMARK 465 ALA C 351 REMARK 465 VAL C 352 REMARK 465 GLY C 353 REMARK 465 ARG C 354 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 ARG D 3 REMARK 465 THR D 4 REMARK 465 THR D 5 REMARK 465 LYS D 6 REMARK 465 THR D 7 REMARK 465 SER D 8 REMARK 465 MET D 9 REMARK 465 ALA D 10 REMARK 465 ALA D 11 REMARK 465 ALA D 12 REMARK 465 SER D 13 REMARK 465 THR D 14 REMARK 465 VAL D 15 REMARK 465 ALA D 16 REMARK 465 PRO D 17 REMARK 465 GLU D 18 REMARK 465 VAL D 19 REMARK 465 ALA D 20 REMARK 465 MET D 21 REMARK 465 ASP D 22 REMARK 465 GLU D 23 REMARK 465 GLY D 24 REMARK 465 SER D 25 REMARK 465 PRO D 26 REMARK 465 SER D 27 REMARK 465 THR D 28 REMARK 465 SER D 29 REMARK 465 GLN D 30 REMARK 465 ALA D 31 REMARK 465 GLN D 32 REMARK 465 VAL D 33 REMARK 465 ALA D 351 REMARK 465 VAL D 352 REMARK 465 GLY D 353 REMARK 465 ARG D 354 REMARK 465 MET E 1 REMARK 465 VAL E 2 REMARK 465 ARG E 3 REMARK 465 THR E 4 REMARK 465 THR E 5 REMARK 465 LYS E 6 REMARK 465 THR E 7 REMARK 465 SER E 8 REMARK 465 MET E 9 REMARK 465 ALA E 10 REMARK 465 ALA E 11 REMARK 465 ALA E 12 REMARK 465 SER E 13 REMARK 465 THR E 14 REMARK 465 VAL E 15 REMARK 465 ALA E 16 REMARK 465 PRO E 17 REMARK 465 GLU E 18 REMARK 465 VAL E 19 REMARK 465 ALA E 20 REMARK 465 MET E 21 REMARK 465 ASP E 22 REMARK 465 GLU E 23 REMARK 465 GLY E 24 REMARK 465 SER E 25 REMARK 465 PRO E 26 REMARK 465 SER E 27 REMARK 465 THR E 28 REMARK 465 SER E 29 REMARK 465 GLN E 30 REMARK 465 ALA E 31 REMARK 465 GLN E 32 REMARK 465 VAL E 33 REMARK 465 GLU E 34 REMARK 465 LEU E 35 REMARK 465 PRO E 36 REMARK 465 ARG E 37 REMARK 465 ASN E 38 REMARK 465 LEU E 39 REMARK 465 GLU E 40 REMARK 465 VAL E 41 REMARK 465 PHE E 42 REMARK 465 ASN E 43 REMARK 465 GLU E 44 REMARK 465 ALA E 45 REMARK 465 CYS E 46 REMARK 465 GLY E 47 REMARK 465 HIS E 48 REMARK 465 VAL E 49 REMARK 465 PHE E 50 REMARK 465 GLY E 51 REMARK 465 SER E 52 REMARK 465 SER E 53 REMARK 465 PHE E 54 REMARK 465 ASN E 55 REMARK 465 ARG E 56 REMARK 465 GLU E 57 REMARK 465 ASP E 58 REMARK 465 ASN E 59 REMARK 465 SER E 60 REMARK 465 VAL E 61 REMARK 465 ILE E 62 REMARK 465 SER E 63 REMARK 465 ASP E 64 REMARK 465 ALA E 65 REMARK 465 ALA E 66 REMARK 465 ALA E 67 REMARK 465 PHE E 68 REMARK 465 LEU E 69 REMARK 465 PHE E 70 REMARK 465 LYS E 71 REMARK 465 MET E 72 REMARK 465 HIS E 73 REMARK 465 THR E 74 REMARK 465 HIS E 75 REMARK 465 SER E 76 REMARK 465 LEU E 77 REMARK 465 ASP E 78 REMARK 465 GLY E 79 REMARK 465 GLN E 80 REMARK 465 GLU E 81 REMARK 465 ALA E 82 REMARK 465 LYS E 83 REMARK 465 VAL E 84 REMARK 465 LEU E 85 REMARK 465 ARG E 86 REMARK 465 ALA E 87 REMARK 465 SER E 88 REMARK 465 GLU E 89 REMARK 465 LYS E 90 REMARK 465 LYS E 91 REMARK 465 ARG E 92 REMARK 465 GLU E 93 REMARK 465 ARG E 94 REMARK 465 GLU E 95 REMARK 465 ASN E 96 REMARK 465 ALA E 97 REMARK 465 LYS E 98 REMARK 465 LYS E 99 REMARK 465 SER E 100 REMARK 465 ARG E 101 REMARK 465 LYS E 102 REMARK 465 ALA E 103 REMARK 465 PRO E 104 REMARK 465 GLU E 105 REMARK 465 ALA E 106 REMARK 465 GLY E 107 REMARK 465 MET E 108 REMARK 465 ARG E 109 REMARK 465 VAL E 110 REMARK 465 GLY E 111 REMARK 465 ARG E 112 REMARK 465 SER E 113 REMARK 465 LEU E 114 REMARK 465 ILE E 115 REMARK 465 LEU E 116 REMARK 465 THR E 117 REMARK 465 SER E 118 REMARK 465 ARG E 119 REMARK 465 TRP E 120 REMARK 465 THR E 121 REMARK 465 GLU E 122 REMARK 465 TYR E 123 REMARK 465 CYS E 124 REMARK 465 ALA E 125 REMARK 465 THR E 126 REMARK 465 CYS E 127 REMARK 465 VAL E 128 REMARK 465 PRO E 129 REMARK 465 ALA E 130 REMARK 465 LEU E 131 REMARK 465 GLY E 132 REMARK 465 SER E 133 REMARK 465 LYS E 134 REMARK 465 MET E 135 REMARK 465 LYS E 136 REMARK 465 VAL E 137 REMARK 465 ILE E 138 REMARK 465 LYS E 139 REMARK 465 ALA E 140 REMARK 465 SER E 141 REMARK 465 GLY E 142 REMARK 465 ASP E 143 REMARK 465 ALA E 144 REMARK 465 ALA E 145 REMARK 465 MET E 146 REMARK 465 ILE E 147 REMARK 465 GLN E 148 REMARK 465 MET E 149 REMARK 465 MET E 150 REMARK 465 LYS E 151 REMARK 465 ASP E 152 REMARK 465 HIS E 153 REMARK 465 ASN E 154 REMARK 465 SER E 155 REMARK 465 LEU E 156 REMARK 465 LEU E 157 REMARK 465 ARG E 158 REMARK 465 VAL E 159 REMARK 465 CYS E 160 REMARK 465 VAL E 161 REMARK 465 ARG E 162 REMARK 465 ILE E 163 REMARK 465 GLU E 164 REMARK 465 VAL E 165 REMARK 465 TRP E 166 REMARK 465 LYS E 167 REMARK 465 ALA E 168 REMARK 465 ARG E 169 REMARK 465 TYR E 170 REMARK 465 VAL E 171 REMARK 465 SER E 172 REMARK 465 LEU E 173 REMARK 465 VAL E 174 REMARK 465 ALA E 175 REMARK 465 LEU E 176 REMARK 465 ASP E 177 REMARK 465 GLU E 178 REMARK 465 ARG E 179 REMARK 465 ILE E 180 REMARK 465 GLN E 181 REMARK 465 THR E 182 REMARK 465 LEU E 183 REMARK 465 GLU E 184 REMARK 465 ASP E 185 REMARK 465 ALA E 186 REMARK 465 GLN E 187 REMARK 465 TRP E 188 REMARK 465 PHE E 189 REMARK 465 PRO E 190 REMARK 465 TYR E 191 REMARK 465 LEU E 192 REMARK 465 SER E 193 REMARK 465 GLY E 194 REMARK 465 ASP E 195 REMARK 465 SER E 196 REMARK 465 TYR E 197 REMARK 465 ARG E 198 REMARK 465 ALA E 199 REMARK 465 CYS E 200 REMARK 465 PRO E 201 REMARK 465 GLY E 202 REMARK 465 LEU E 203 REMARK 465 VAL E 204 REMARK 465 GLY E 205 REMARK 465 GLY E 206 REMARK 465 TYR E 207 REMARK 465 PHE E 208 REMARK 465 ALA E 209 REMARK 465 LYS E 210 REMARK 465 LYS E 211 REMARK 465 ALA E 212 REMARK 465 ALA E 213 REMARK 465 ALA E 214 REMARK 465 GLY E 215 REMARK 465 GLU E 216 REMARK 465 ARG E 217 REMARK 465 GLY E 218 REMARK 465 LYS E 219 REMARK 465 ASN E 220 REMARK 465 TYR E 221 REMARK 465 LYS E 222 REMARK 465 LYS E 223 REMARK 465 LEU E 224 REMARK 465 ASN E 225 REMARK 465 GLN E 226 REMARK 465 THR E 227 REMARK 465 ALA E 228 REMARK 465 ILE E 229 REMARK 465 ILE E 230 REMARK 465 PRO E 231 REMARK 465 PRO E 232 REMARK 465 PRO E 233 REMARK 465 ARG E 234 REMARK 465 PHE E 235 REMARK 465 LEU E 236 REMARK 465 ILE E 237 REMARK 465 ILE E 238 REMARK 465 GLY E 239 REMARK 465 HIS E 240 REMARK 465 ARG E 241 REMARK 465 LEU E 242 REMARK 465 GLN E 243 REMARK 465 ILE E 244 REMARK 465 GLY E 245 REMARK 465 ASP E 246 REMARK 465 GLN E 247 REMARK 465 VAL E 248 REMARK 465 THR E 249 REMARK 465 LEU E 250 REMARK 465 ARG E 251 REMARK 465 GLU E 252 REMARK 465 LEU E 253 REMARK 465 LEU E 254 REMARK 465 ALA E 255 REMARK 465 SER E 256 REMARK 465 ILE E 257 REMARK 465 ALA E 258 REMARK 465 TRP E 259 REMARK 465 GLY E 260 REMARK 465 LEU E 261 REMARK 465 CYS E 262 REMARK 465 ASP E 263 REMARK 465 GLY E 264 REMARK 465 VAL E 265 REMARK 465 LEU E 266 REMARK 465 ALA E 267 REMARK 465 GLU E 268 REMARK 465 CYS E 269 REMARK 465 TRP E 270 REMARK 465 SER E 271 REMARK 465 PRO E 272 REMARK 465 SER E 273 REMARK 465 GLN E 274 REMARK 465 GLY E 275 REMARK 465 ASP E 276 REMARK 465 GLY E 277 REMARK 465 SER E 278 REMARK 465 ILE E 279 REMARK 465 GLY E 280 REMARK 465 VAL E 281 REMARK 465 VAL E 282 REMARK 465 VAL E 283 REMARK 465 GLY E 284 REMARK 465 LEU E 285 REMARK 465 PRO E 286 REMARK 465 LEU E 287 REMARK 465 GLN E 288 REMARK 465 ALA E 289 REMARK 465 THR E 290 REMARK 465 GLY E 291 REMARK 465 THR E 313 REMARK 465 GLY E 314 REMARK 465 ASN E 315 REMARK 465 THR E 316 REMARK 465 ASN E 317 REMARK 465 LEU E 318 REMARK 465 LEU E 319 REMARK 465 GLU E 320 REMARK 465 GLU E 321 REMARK 465 CYS E 322 REMARK 465 ILE E 323 REMARK 465 ALA E 324 REMARK 465 ILE E 325 REMARK 465 GLN E 326 REMARK 465 LYS E 327 REMARK 465 GLN E 328 REMARK 465 ASP E 329 REMARK 465 GLY E 330 REMARK 465 VAL E 331 REMARK 465 ILE E 332 REMARK 465 LYS E 333 REMARK 465 CYS E 334 REMARK 465 LYS E 335 REMARK 465 ARG E 336 REMARK 465 SER E 337 REMARK 465 GLY E 338 REMARK 465 LYS E 339 REMARK 465 SER E 340 REMARK 465 LEU E 341 REMARK 465 TYR E 342 REMARK 465 HIS E 343 REMARK 465 CYS E 344 REMARK 465 LEU E 345 REMARK 465 LYS E 346 REMARK 465 GLU E 347 REMARK 465 THR E 348 REMARK 465 ALA E 349 REMARK 465 GLY E 350 REMARK 465 ALA E 351 REMARK 465 VAL E 352 REMARK 465 GLY E 353 REMARK 465 ARG E 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 GLU D 34 CG CD OE1 OE2 REMARK 470 SER E 292 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 258 -175.08 -170.51 REMARK 500 ASP C 276 -76.60 35.90 REMARK 500 PRO D 36 171.95 -58.87 REMARK 500 THR D 290 31.24 -140.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-52030 RELATED DB: EMDB REMARK 900 TILV-NP TETRAMER (PSEUDO-C2) (LOCAL REFINEMENT AROUND 2 TILV-NPS) DBREF1 9HBU C 1 354 UNP A0A1Y9SHW7_9VIRU DBREF2 9HBU C A0A1Y9SHW7 1 354 DBREF1 9HBU D 1 354 UNP A0A1Y9SHW7_9VIRU DBREF2 9HBU D A0A1Y9SHW7 1 354 DBREF1 9HBU E 1 354 UNP A0A1Y9SHW7_9VIRU DBREF2 9HBU E A0A1Y9SHW7 1 354 DBREF 9HBU H 2 41 PDB 9HBU 9HBU 2 41 SEQRES 1 C 354 MET VAL ARG THR THR LYS THR SER MET ALA ALA ALA SER SEQRES 2 C 354 THR VAL ALA PRO GLU VAL ALA MET ASP GLU GLY SER PRO SEQRES 3 C 354 SER THR SER GLN ALA GLN VAL GLU LEU PRO ARG ASN LEU SEQRES 4 C 354 GLU VAL PHE ASN GLU ALA CYS GLY HIS VAL PHE GLY SER SEQRES 5 C 354 SER PHE ASN ARG GLU ASP ASN SER VAL ILE SER ASP ALA SEQRES 6 C 354 ALA ALA PHE LEU PHE LYS MET HIS THR HIS SER LEU ASP SEQRES 7 C 354 GLY GLN GLU ALA LYS VAL LEU ARG ALA SER GLU LYS LYS SEQRES 8 C 354 ARG GLU ARG GLU ASN ALA LYS LYS SER ARG LYS ALA PRO SEQRES 9 C 354 GLU ALA GLY MET ARG VAL GLY ARG SER LEU ILE LEU THR SEQRES 10 C 354 SER ARG TRP THR GLU TYR CYS ALA THR CYS VAL PRO ALA SEQRES 11 C 354 LEU GLY SER LYS MET LYS VAL ILE LYS ALA SER GLY ASP SEQRES 12 C 354 ALA ALA MET ILE GLN MET MET LYS ASP HIS ASN SER LEU SEQRES 13 C 354 LEU ARG VAL CYS VAL ARG ILE GLU VAL TRP LYS ALA ARG SEQRES 14 C 354 TYR VAL SER LEU VAL ALA LEU ASP GLU ARG ILE GLN THR SEQRES 15 C 354 LEU GLU ASP ALA GLN TRP PHE PRO TYR LEU SER GLY ASP SEQRES 16 C 354 SER TYR ARG ALA CYS PRO GLY LEU VAL GLY GLY TYR PHE SEQRES 17 C 354 ALA LYS LYS ALA ALA ALA GLY GLU ARG GLY LYS ASN TYR SEQRES 18 C 354 LYS LYS LEU ASN GLN THR ALA ILE ILE PRO PRO PRO ARG SEQRES 19 C 354 PHE LEU ILE ILE GLY HIS ARG LEU GLN ILE GLY ASP GLN SEQRES 20 C 354 VAL THR LEU ARG GLU LEU LEU ALA SER ILE ALA TRP GLY SEQRES 21 C 354 LEU CYS ASP GLY VAL LEU ALA GLU CYS TRP SER PRO SER SEQRES 22 C 354 GLN GLY ASP GLY SER ILE GLY VAL VAL VAL GLY LEU PRO SEQRES 23 C 354 LEU GLN ALA THR GLY SER CYS PHE LEU VAL VAL ALA SER SEQRES 24 C 354 HIS GLY LEU SER ALA ILE ALA ASP SER ARG ILE GLU GLY SEQRES 25 C 354 THR GLY ASN THR ASN LEU LEU GLU GLU CYS ILE ALA ILE SEQRES 26 C 354 GLN LYS GLN ASP GLY VAL ILE LYS CYS LYS ARG SER GLY SEQRES 27 C 354 LYS SER LEU TYR HIS CYS LEU LYS GLU THR ALA GLY ALA SEQRES 28 C 354 VAL GLY ARG SEQRES 1 D 354 MET VAL ARG THR THR LYS THR SER MET ALA ALA ALA SER SEQRES 2 D 354 THR VAL ALA PRO GLU VAL ALA MET ASP GLU GLY SER PRO SEQRES 3 D 354 SER THR SER GLN ALA GLN VAL GLU LEU PRO ARG ASN LEU SEQRES 4 D 354 GLU VAL PHE ASN GLU ALA CYS GLY HIS VAL PHE GLY SER SEQRES 5 D 354 SER PHE ASN ARG GLU ASP ASN SER VAL ILE SER ASP ALA SEQRES 6 D 354 ALA ALA PHE LEU PHE LYS MET HIS THR HIS SER LEU ASP SEQRES 7 D 354 GLY GLN GLU ALA LYS VAL LEU ARG ALA SER GLU LYS LYS SEQRES 8 D 354 ARG GLU ARG GLU ASN ALA LYS LYS SER ARG LYS ALA PRO SEQRES 9 D 354 GLU ALA GLY MET ARG VAL GLY ARG SER LEU ILE LEU THR SEQRES 10 D 354 SER ARG TRP THR GLU TYR CYS ALA THR CYS VAL PRO ALA SEQRES 11 D 354 LEU GLY SER LYS MET LYS VAL ILE LYS ALA SER GLY ASP SEQRES 12 D 354 ALA ALA MET ILE GLN MET MET LYS ASP HIS ASN SER LEU SEQRES 13 D 354 LEU ARG VAL CYS VAL ARG ILE GLU VAL TRP LYS ALA ARG SEQRES 14 D 354 TYR VAL SER LEU VAL ALA LEU ASP GLU ARG ILE GLN THR SEQRES 15 D 354 LEU GLU ASP ALA GLN TRP PHE PRO TYR LEU SER GLY ASP SEQRES 16 D 354 SER TYR ARG ALA CYS PRO GLY LEU VAL GLY GLY TYR PHE SEQRES 17 D 354 ALA LYS LYS ALA ALA ALA GLY GLU ARG GLY LYS ASN TYR SEQRES 18 D 354 LYS LYS LEU ASN GLN THR ALA ILE ILE PRO PRO PRO ARG SEQRES 19 D 354 PHE LEU ILE ILE GLY HIS ARG LEU GLN ILE GLY ASP GLN SEQRES 20 D 354 VAL THR LEU ARG GLU LEU LEU ALA SER ILE ALA TRP GLY SEQRES 21 D 354 LEU CYS ASP GLY VAL LEU ALA GLU CYS TRP SER PRO SER SEQRES 22 D 354 GLN GLY ASP GLY SER ILE GLY VAL VAL VAL GLY LEU PRO SEQRES 23 D 354 LEU GLN ALA THR GLY SER CYS PHE LEU VAL VAL ALA SER SEQRES 24 D 354 HIS GLY LEU SER ALA ILE ALA ASP SER ARG ILE GLU GLY SEQRES 25 D 354 THR GLY ASN THR ASN LEU LEU GLU GLU CYS ILE ALA ILE SEQRES 26 D 354 GLN LYS GLN ASP GLY VAL ILE LYS CYS LYS ARG SER GLY SEQRES 27 D 354 LYS SER LEU TYR HIS CYS LEU LYS GLU THR ALA GLY ALA SEQRES 28 D 354 VAL GLY ARG SEQRES 1 E 354 MET VAL ARG THR THR LYS THR SER MET ALA ALA ALA SER SEQRES 2 E 354 THR VAL ALA PRO GLU VAL ALA MET ASP GLU GLY SER PRO SEQRES 3 E 354 SER THR SER GLN ALA GLN VAL GLU LEU PRO ARG ASN LEU SEQRES 4 E 354 GLU VAL PHE ASN GLU ALA CYS GLY HIS VAL PHE GLY SER SEQRES 5 E 354 SER PHE ASN ARG GLU ASP ASN SER VAL ILE SER ASP ALA SEQRES 6 E 354 ALA ALA PHE LEU PHE LYS MET HIS THR HIS SER LEU ASP SEQRES 7 E 354 GLY GLN GLU ALA LYS VAL LEU ARG ALA SER GLU LYS LYS SEQRES 8 E 354 ARG GLU ARG GLU ASN ALA LYS LYS SER ARG LYS ALA PRO SEQRES 9 E 354 GLU ALA GLY MET ARG VAL GLY ARG SER LEU ILE LEU THR SEQRES 10 E 354 SER ARG TRP THR GLU TYR CYS ALA THR CYS VAL PRO ALA SEQRES 11 E 354 LEU GLY SER LYS MET LYS VAL ILE LYS ALA SER GLY ASP SEQRES 12 E 354 ALA ALA MET ILE GLN MET MET LYS ASP HIS ASN SER LEU SEQRES 13 E 354 LEU ARG VAL CYS VAL ARG ILE GLU VAL TRP LYS ALA ARG SEQRES 14 E 354 TYR VAL SER LEU VAL ALA LEU ASP GLU ARG ILE GLN THR SEQRES 15 E 354 LEU GLU ASP ALA GLN TRP PHE PRO TYR LEU SER GLY ASP SEQRES 16 E 354 SER TYR ARG ALA CYS PRO GLY LEU VAL GLY GLY TYR PHE SEQRES 17 E 354 ALA LYS LYS ALA ALA ALA GLY GLU ARG GLY LYS ASN TYR SEQRES 18 E 354 LYS LYS LEU ASN GLN THR ALA ILE ILE PRO PRO PRO ARG SEQRES 19 E 354 PHE LEU ILE ILE GLY HIS ARG LEU GLN ILE GLY ASP GLN SEQRES 20 E 354 VAL THR LEU ARG GLU LEU LEU ALA SER ILE ALA TRP GLY SEQRES 21 E 354 LEU CYS ASP GLY VAL LEU ALA GLU CYS TRP SER PRO SER SEQRES 22 E 354 GLN GLY ASP GLY SER ILE GLY VAL VAL VAL GLY LEU PRO SEQRES 23 E 354 LEU GLN ALA THR GLY SER CYS PHE LEU VAL VAL ALA SER SEQRES 24 E 354 HIS GLY LEU SER ALA ILE ALA ASP SER ARG ILE GLU GLY SEQRES 25 E 354 THR GLY ASN THR ASN LEU LEU GLU GLU CYS ILE ALA ILE SEQRES 26 E 354 GLN LYS GLN ASP GLY VAL ILE LYS CYS LYS ARG SER GLY SEQRES 27 E 354 LYS SER LEU TYR HIS CYS LEU LYS GLU THR ALA GLY ALA SEQRES 28 E 354 VAL GLY ARG SEQRES 1 H 37 P5P P5P P5P Y5P Y5P Y5P Y5P Y5P Y5P Y5P Y5P Y5P Y5P SEQRES 2 H 37 P5P Y5P P5P Y5P Y5P Y5P P5P P5P Y5P P5P Y5P P5P P5P SEQRES 3 H 37 P5P P5P P5P P5P P5P P5P Y5P Y5P Y5P Y5P P5P HET P5P H 2 21 HET P5P H 3 21 HET P5P H 4 21 HET Y5P H 5 18 HET Y5P H 6 18 HET Y5P H 7 18 HET Y5P H 8 18 HET Y5P H 9 18 HET Y5P H 10 18 HET Y5P H 11 18 HET Y5P H 12 18 HET Y5P H 13 18 HET Y5P H 14 18 HET P5P H 15 21 HET Y5P H 16 18 HET P5P H 17 21 HET Y5P H 18 18 HET Y5P H 19 18 HET Y5P H 20 18 HET P5P H 24 21 HET P5P H 25 21 HET Y5P H 26 18 HET P5P H 27 21 HET Y5P H 28 18 HET P5P H 29 21 HET P5P H 30 21 HET P5P H 31 21 HET P5P H 32 21 HET P5P H 33 21 HET P5P H 34 21 HET P5P H 35 21 HET P5P H 36 21 HET Y5P H 37 18 HET Y5P H 38 18 HET Y5P H 39 18 HET Y5P H 40 18 HET P5P H 41 21 HETNAM P5P PURINE RIBOSIDE-5'-MONOPHOSPHATE HETNAM Y5P 1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1,4- HETNAM 2 Y5P DIHYDROPYRIMIDINE HETSYN Y5P PYRIMIDINE RIBOSIDE-5'-MONOPHOSPHATE FORMUL 4 P5P 17(C10 H13 N4 O7 P) FORMUL 4 Y5P 20(C9 H15 N2 O7 P) HELIX 1 AA1 PRO C 36 GLY C 51 1 16 HELIX 2 AA2 SER C 52 PHE C 54 5 3 HELIX 3 AA3 ASP C 58 THR C 74 1 17 HELIX 4 AA4 SER C 88 ARG C 101 1 14 HELIX 5 AA5 SER C 118 CYS C 127 1 10 HELIX 6 AA6 LYS C 134 GLY C 142 1 9 HELIX 7 AA7 ASP C 143 LEU C 173 1 31 HELIX 8 AA8 THR C 182 GLN C 187 1 6 HELIX 9 AA9 SER C 193 CYS C 200 1 8 HELIX 10 AB1 GLY C 206 GLU C 216 1 11 HELIX 11 AB2 PRO C 232 ILE C 237 1 6 HELIX 12 AB3 THR C 249 ALA C 258 1 10 HELIX 13 AB4 ASP C 263 GLU C 268 5 6 HELIX 14 AB5 THR C 316 GLU C 320 5 5 HELIX 15 AB6 SER C 340 GLY C 350 1 11 HELIX 16 AB7 PRO D 36 GLY D 51 1 16 HELIX 17 AB8 SER D 52 PHE D 54 5 3 HELIX 18 AB9 ASP D 58 THR D 74 1 17 HELIX 19 AC1 SER D 88 ARG D 101 1 14 HELIX 20 AC2 ARG D 119 VAL D 128 1 10 HELIX 21 AC3 LYS D 134 GLY D 142 1 9 HELIX 22 AC4 ASP D 143 LEU D 173 1 31 HELIX 23 AC5 THR D 182 GLN D 187 1 6 HELIX 24 AC6 SER D 193 CYS D 200 1 8 HELIX 25 AC7 GLY D 206 GLY D 215 1 10 HELIX 26 AC8 PRO D 232 ILE D 237 1 6 HELIX 27 AC9 THR D 249 ALA D 258 1 10 HELIX 28 AD1 ASP D 263 GLU D 268 5 6 HELIX 29 AD2 ASP D 307 GLY D 312 1 6 HELIX 30 AD3 ASN D 315 GLU D 320 1 6 HELIX 31 AD4 SER D 340 GLY D 350 1 11 SHEET 1 AA1 2 ARG C 109 VAL C 110 0 SHEET 2 AA1 2 LEU C 114 ILE C 115 -1 O LEU C 114 N VAL C 110 SHEET 1 AA2 3 GLN C 247 VAL C 248 0 SHEET 2 AA2 3 GLY C 280 VAL C 282 -1 O GLY C 280 N VAL C 248 SHEET 3 AA2 3 TRP C 270 PRO C 272 -1 N SER C 271 O VAL C 281 SHEET 1 AA3 3 LEU C 285 PRO C 286 0 SHEET 2 AA3 3 CYS C 322 GLN C 326 -1 O GLN C 326 N LEU C 285 SHEET 3 AA3 3 VAL C 331 LYS C 335 -1 O ILE C 332 N ILE C 325 SHEET 1 AA4 2 ARG D 109 VAL D 110 0 SHEET 2 AA4 2 LEU D 114 ILE D 115 -1 O LEU D 114 N VAL D 110 SHEET 1 AA5 2 TRP D 270 SER D 271 0 SHEET 2 AA5 2 VAL D 281 VAL D 282 -1 O VAL D 281 N SER D 271 SHEET 1 AA6 3 GLY D 284 PRO D 286 0 SHEET 2 AA6 3 ILE D 323 LYS D 327 -1 O GLN D 326 N LEU D 285 SHEET 3 AA6 3 VAL D 331 CYS D 334 -1 O ILE D 332 N ILE D 325 LINK O3' P5P H 2 P P5P H 3 1555 1555 1.61 LINK O3' P5P H 3 P P5P H 4 1555 1555 1.61 LINK O3' P5P H 4 P Y5P H 5 1555 1555 1.61 LINK O3' Y5P H 5 P Y5P H 6 1555 1555 1.61 LINK O3' Y5P H 6 P Y5P H 7 1555 1555 1.61 LINK O3' Y5P H 7 P Y5P H 8 1555 1555 1.61 LINK O3' Y5P H 8 P Y5P H 9 1555 1555 1.61 LINK O3' Y5P H 9 P Y5P H 10 1555 1555 1.61 LINK O3' Y5P H 10 P Y5P H 11 1555 1555 1.61 LINK O3' Y5P H 11 P Y5P H 12 1555 1555 1.61 LINK O3' Y5P H 12 P Y5P H 13 1555 1555 1.61 LINK O3' Y5P H 13 P Y5P H 14 1555 1555 1.61 LINK O3' Y5P H 14 P P5P H 15 1555 1555 1.61 LINK O3' P5P H 15 P Y5P H 16 1555 1555 1.61 LINK O3' Y5P H 16 P P5P H 17 1555 1555 1.61 LINK O3' P5P H 17 P Y5P H 18 1555 1555 1.61 LINK O3' Y5P H 18 P Y5P H 19 1555 1555 1.61 LINK O3' Y5P H 19 P Y5P H 20 1555 1555 1.61 LINK O3' P5P H 24 P P5P H 25 1555 1555 1.61 LINK O3' P5P H 25 P Y5P H 26 1555 1555 1.61 LINK O3' Y5P H 26 P P5P H 27 1555 1555 1.61 LINK O3' P5P H 27 P Y5P H 28 1555 1555 1.61 LINK O3' Y5P H 28 P P5P H 29 1555 1555 1.61 LINK O3' P5P H 29 P P5P H 30 1555 1555 1.61 LINK O3' P5P H 30 P P5P H 31 1555 1555 1.61 LINK O3' P5P H 31 P P5P H 32 1555 1555 1.61 LINK O3' P5P H 32 P P5P H 33 1555 1555 1.61 LINK O3' P5P H 33 P P5P H 34 1555 1555 1.61 LINK O3' P5P H 34 P P5P H 35 1555 1555 1.61 LINK O3' P5P H 35 P P5P H 36 1555 1555 1.61 LINK O3' P5P H 36 P Y5P H 37 1555 1555 1.61 LINK O3' Y5P H 37 P Y5P H 38 1555 1555 1.61 LINK O3' Y5P H 38 P Y5P H 39 1555 1555 1.61 LINK O3' Y5P H 39 P Y5P H 40 1555 1555 1.61 LINK O3' Y5P H 40 P P5P H 41 1555 1555 1.61 CISPEP 1 PHE C 189 PRO C 190 0 -1.71 CISPEP 2 PHE D 189 PRO D 190 0 -2.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000