HEADER LIGASE 19-NOV-24 9HGG TITLE SETD2 PEPTIDE BOUND TO SPOP MATH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECKLE-TYPE POZ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIB HOMOLOG 1,ROADKILL HOMOLOG 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 10 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 11 METHYLTRANSFERASE 3A,PROTEIN-LYSINE N-METHYLTRANSFERASE SETD2,SET COMPND 12 DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 13 EC: 2.1.1.359,2.1.1.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPOP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS UBIQUITINATION, LIGASE, COMPLEX, DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR L.MAKHLOUF,E.ZEQIRAJ REVDAT 2 23-JUL-25 9HGG 1 JRNL REVDAT 1 23-APR-25 9HGG 0 JRNL AUTH L.MAKHLOUF,M.MISHRA,H.MAKHLOUF,I.MANFIELD,L.BUSINO,E.ZEQIRAJ JRNL TITL SEQUENCE RULES FOR A LONG SPOP-BINDING DEGRON REQUIRED FOR JRNL TITL 2 PROTEIN UBIQUITYLATION. JRNL REF BIOCHEM.J. V. 482 583 2025 JRNL REFN ESSN 1470-8728 JRNL PMID 40178506 JRNL DOI 10.1042/BCJ20253041 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5600 - 2.7400 1.00 3400 165 0.1681 0.2402 REMARK 3 2 2.7400 - 2.1700 1.00 3264 152 0.2325 0.2725 REMARK 3 3 2.1700 - 1.9000 1.00 3189 167 0.2386 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.899 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1226 REMARK 3 ANGLE : 1.212 1649 REMARK 3 CHIRALITY : 0.064 182 REMARK 3 PLANARITY : 0.010 208 REMARK 3 DIHEDRAL : 6.753 163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1832 19.6614 5.6088 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.2667 REMARK 3 T33: 0.1171 T12: -0.0255 REMARK 3 T13: 0.0410 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.2066 L22: 2.2841 REMARK 3 L33: 2.4794 L12: -1.3371 REMARK 3 L13: 0.6407 L23: -0.4659 REMARK 3 S TENSOR REMARK 3 S11: -0.2344 S12: -0.2310 S13: 0.2786 REMARK 3 S21: -0.0467 S22: 0.0615 S23: -0.1515 REMARK 3 S31: 0.0299 S32: 0.1145 S33: 0.1296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8580 18.5741 -0.9518 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.2917 REMARK 3 T33: 0.1654 T12: -0.0128 REMARK 3 T13: 0.0423 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.7936 L22: 3.4664 REMARK 3 L33: 3.4960 L12: -0.5047 REMARK 3 L13: -1.5815 L23: -0.3442 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -0.4033 S13: 0.1943 REMARK 3 S21: -0.1223 S22: -0.1381 S23: -0.3442 REMARK 3 S31: -0.1125 S32: 0.5203 S33: 0.0053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9216 15.6702 0.6036 REMARK 3 T TENSOR REMARK 3 T11: 0.2665 T22: 0.2672 REMARK 3 T33: 0.1824 T12: -0.0201 REMARK 3 T13: -0.0483 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 3.9526 L22: 5.2513 REMARK 3 L33: 2.1912 L12: 4.2791 REMARK 3 L13: 0.3297 L23: 1.4383 REMARK 3 S TENSOR REMARK 3 S11: -0.5187 S12: 1.2146 S13: 0.3221 REMARK 3 S21: -0.5111 S22: 0.5947 S23: 0.2716 REMARK 3 S31: -0.1061 S32: 0.1573 S33: -0.1598 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1597 6.6322 5.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.2202 T22: 0.3285 REMARK 3 T33: 0.3797 T12: -0.0926 REMARK 3 T13: 0.0802 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 6.0260 L22: 4.5383 REMARK 3 L33: 8.8849 L12: -1.0206 REMARK 3 L13: -0.1426 L23: 0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.4186 S12: -0.0272 S13: -1.0104 REMARK 3 S21: -0.0792 S22: 0.0527 S23: 0.3952 REMARK 3 S31: 0.9432 S32: -0.6469 S33: 0.2433 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3459 11.7927 0.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.3458 REMARK 3 T33: 0.1906 T12: 0.0513 REMARK 3 T13: 0.0066 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 4.5135 L22: 2.5003 REMARK 3 L33: 3.1013 L12: 1.3705 REMARK 3 L13: -2.3320 L23: -0.6741 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: 0.4273 S13: -0.7239 REMARK 3 S21: -0.1702 S22: -0.1311 S23: -0.3102 REMARK 3 S31: 0.3237 S32: 0.5407 S33: 0.1847 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3809 13.2608 10.6419 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2564 REMARK 3 T33: 0.1805 T12: 0.0490 REMARK 3 T13: -0.0437 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.8549 L22: 5.1641 REMARK 3 L33: 5.7403 L12: -2.6453 REMARK 3 L13: -3.5395 L23: 1.8251 REMARK 3 S TENSOR REMARK 3 S11: -0.6726 S12: -0.4000 S13: 0.5052 REMARK 3 S21: 0.5093 S22: 0.4093 S23: -0.7222 REMARK 3 S31: 0.4437 S32: 0.9291 S33: 0.1746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5522 22.8825 18.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.2399 REMARK 3 T33: 0.2085 T12: -0.0495 REMARK 3 T13: -0.0233 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 5.3084 L22: 2.5155 REMARK 3 L33: 8.4874 L12: -2.5515 REMARK 3 L13: 1.0712 L23: 0.3218 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: -0.2860 S13: 0.2660 REMARK 3 S21: 0.1778 S22: -0.0506 S23: -0.9970 REMARK 3 S31: -0.4650 S32: 1.1963 S33: -0.0337 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1287 7.5785 6.7573 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2528 REMARK 3 T33: 0.1847 T12: 0.0002 REMARK 3 T13: -0.0252 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.5519 L22: 1.9342 REMARK 3 L33: 5.2377 L12: -1.2624 REMARK 3 L13: -2.4982 L23: -0.2867 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.4672 S13: 0.1040 REMARK 3 S21: 0.1679 S22: 0.3520 S23: 0.1010 REMARK 3 S31: 0.2692 S32: 0.4787 S33: -0.3869 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6781 12.9981 11.6983 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2238 REMARK 3 T33: 0.2149 T12: -0.0175 REMARK 3 T13: 0.0154 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 5.1071 L22: 2.7492 REMARK 3 L33: 4.0314 L12: -1.9884 REMARK 3 L13: -1.4632 L23: 1.5616 REMARK 3 S TENSOR REMARK 3 S11: -0.2362 S12: -0.3627 S13: -0.4921 REMARK 3 S21: 0.1276 S22: 0.0839 S23: 0.4405 REMARK 3 S31: 0.1430 S32: -0.4316 S33: 0.1921 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3496 20.6019 9.8847 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1728 REMARK 3 T33: 0.1134 T12: -0.0101 REMARK 3 T13: -0.0001 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.8031 L22: 3.3270 REMARK 3 L33: 2.4479 L12: -1.4767 REMARK 3 L13: -1.4566 L23: 0.7104 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0478 S13: 0.5715 REMARK 3 S21: 0.0580 S22: -0.0712 S23: -0.2348 REMARK 3 S31: -0.1843 S32: 0.2793 S33: -0.0177 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1364 THROUGH 1377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5532 5.2246 10.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.1234 REMARK 3 T33: 0.3133 T12: -0.0188 REMARK 3 T13: 0.0037 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 5.3310 L22: 4.3099 REMARK 3 L33: 6.7558 L12: -1.0218 REMARK 3 L13: -1.6010 L23: 2.4861 REMARK 3 S TENSOR REMARK 3 S11: -0.2249 S12: 0.0701 S13: -0.8234 REMARK 3 S21: 0.2900 S22: 0.0667 S23: 0.2814 REMARK 3 S31: 0.5813 S32: 0.1573 S33: 0.1672 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9HGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1292141648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 20 000, 20% V/V PEG MME REMARK 280 550, 0.03 M SODIUM FLUORIDE, 0.03 M SODIUM BROMIDE, 0.1 M MES/ REMARK 280 IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.45050 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.45050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 201 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 340 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 347 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 372 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 ASN A 62 REMARK 465 ASP B 1363 REMARK 465 LYS B 1378 REMARK 465 ASP B 1379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 43 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 LYS B1364 CG CD CE NZ REMARK 470 ASN B1375 CG OD1 ND2 REMARK 470 ILE B1377 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 130 OG SER B 1376 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 48 123.79 -37.36 REMARK 500 LYS A 95 -132.02 -126.92 REMARK 500 LYS A 135 73.85 -109.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 329 O REMARK 620 2 HOH A 329 O 134.1 REMARK 620 3 HOH A 372 O 67.1 67.1 REMARK 620 4 HOH A 372 O 67.1 67.1 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 373 O REMARK 620 2 HOH A 391 O 146.2 REMARK 620 N 1 DBREF 9HGG A 28 166 UNP O43791 SPOP_HUMAN 28 166 DBREF 9HGG B 1363 1379 UNP Q9BYW2 SETD2_HUMAN 1363 1379 SEQADV 9HGG ALA A 26 UNP O43791 EXPRESSION TAG SEQADV 9HGG ALA A 27 UNP O43791 EXPRESSION TAG SEQRES 1 A 141 ALA ALA LYS VAL VAL LYS PHE SER TYR MET TRP THR ILE SEQRES 2 A 141 ASN ASN PHE SER PHE CYS ARG GLU GLU MET GLY GLU VAL SEQRES 3 A 141 ILE LYS SER SER THR PHE SER SER GLY ALA ASN ASP LYS SEQRES 4 A 141 LEU LYS TRP CYS LEU ARG VAL ASN PRO LYS GLY LEU ASP SEQRES 5 A 141 GLU GLU SER LYS ASP TYR LEU SER LEU TYR LEU LEU LEU SEQRES 6 A 141 VAL SER CYS PRO LYS SER GLU VAL ARG ALA LYS PHE LYS SEQRES 7 A 141 PHE SER ILE LEU ASN ALA LYS GLY GLU GLU THR LYS ALA SEQRES 8 A 141 MET GLU SER GLN ARG ALA TYR ARG PHE VAL GLN GLY LYS SEQRES 9 A 141 ASP TRP GLY PHE LYS LYS PHE ILE ARG ARG ASP PHE LEU SEQRES 10 A 141 LEU ASP GLU ALA ASN GLY LEU LEU PRO ASP ASP LYS LEU SEQRES 11 A 141 THR LEU PHE CYS GLU VAL SER VAL VAL GLN ASP SEQRES 1 B 17 ASP LYS GLY SER VAL GLN ALA PRO GLU ILE SER SER ASN SEQRES 2 B 17 SER ILE LYS ASP HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 5(MG 2+) FORMUL 8 HOH *121(H2 O) HELIX 1 AA1 ASN A 40 CYS A 44 5 5 HELIX 2 AA2 ARG A 139 LEU A 143 1 5 HELIX 3 AA3 ASP A 144 GLY A 148 5 5 HELIX 4 AA4 LEU A 150 LYS A 154 5 5 SHEET 1 AA1 4 VAL A 29 ILE A 38 0 SHEET 2 AA1 4 LEU A 155 VAL A 164 -1 O LEU A 157 N TRP A 36 SHEET 3 AA1 4 VAL A 98 LEU A 107 -1 N LYS A 101 O SER A 162 SHEET 4 AA1 4 GLU A 113 GLU A 118 -1 O THR A 114 N ILE A 106 SHEET 1 AA2 4 VAL A 29 ILE A 38 0 SHEET 2 AA2 4 LEU A 155 VAL A 164 -1 O LEU A 157 N TRP A 36 SHEET 3 AA2 4 VAL A 98 LEU A 107 -1 N LYS A 101 O SER A 162 SHEET 4 AA2 4 TYR A 123 PHE A 125 -1 O PHE A 125 N VAL A 98 SHEET 1 AA3 3 ILE A 52 LYS A 53 0 SHEET 2 AA3 3 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA3 3 PHE A 57 SER A 58 -1 N PHE A 57 O TRP A 67 SHEET 1 AA4 5 ILE A 52 LYS A 53 0 SHEET 2 AA4 5 LYS A 66 ASN A 72 -1 O VAL A 71 N ILE A 52 SHEET 3 AA4 5 TYR A 83 SER A 92 -1 O TYR A 87 N ARG A 70 SHEET 4 AA4 5 ASP A 130 ARG A 138 -1 O TRP A 131 N LEU A 88 SHEET 5 AA4 5 SER B1373 SER B1374 -1 O SER B1373 N GLY A 132 LINK MG MG A 203 O HOH A 329 1555 1555 2.35 LINK MG MG A 203 O HOH A 329 1555 2565 2.35 LINK MG MG A 203 O HOH A 372 1555 1555 2.95 LINK MG MG A 203 O HOH A 372 1555 2565 2.95 LINK MG MG A 204 O HOH A 358 1555 3645 2.95 LINK MG MG A 205 O HOH A 373 1555 1555 2.08 LINK MG MG A 205 O HOH A 391 1555 2565 2.18 CRYST1 44.565 51.043 54.901 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018215 0.00000 CONECT 2385 2416 2459 CONECT 2387 2460 CONECT 2416 2385 CONECT 2459 2385 CONECT 2460 2387 MASTER 448 0 5 4 16 0 0 6 1320 2 5 13 END