data_9HI8 # _entry.id 9HI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9HI8 pdb_00009hi8 10.2210/pdb9hi8/pdb WWPDB D_1292143391 ? ? EMDB EMD-52185 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-10-01 ? 2 'EM metadata' 1 0 2025-10-01 ? 3 FSC 1 0 2025-10-01 ? 4 'Half map' 1 0 2025-10-01 1 5 'Half map' 1 0 2025-10-01 2 6 Image 1 0 2025-10-01 ? 7 Mask 1 0 2025-10-01 1 8 'Primary map' 1 0 2025-10-01 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9HI8 _pdbx_database_status.recvd_initial_deposition_date 2024-11-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Amyloid fibril from the antimicrobial peptide citropin 1-3 - Polymorph Nr.3L' _pdbx_database_related.db_id EMD-52185 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email meytal.landau@cssb-hamburg.de _pdbx_contact_author.name_first Fabio _pdbx_contact_author.name_last Landau _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1743-3430 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Strati, F.' 1 0000-0003-3586-5453 'Pigozzi, C.M.' 2 0000-0001-5980-2778 'Bloch, Y.' 3 0000-0001-7924-3539 'Rayan, B.' 4 ? 'Mostafavi, S.' 5 0000-0002-4330-3285 'Monistrol, J.' 6 0000-0002-4634-818X 'Golubev, A.' 7 0000-0001-8519-7727 'Gustavsson, E.' 8 0000-0003-0166-1786 'Landau, M.' 9 0000-0002-1743-3430 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Amyloid fibril from the antimicrobial peptide citropin 1-3 - Polymorph Nr.3L' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Strati, F.' 1 0000-0003-3586-5453 primary 'Pigozzi, C.M.' 2 0000-0001-5980-2778 primary 'Bloch, Y.' 3 0000-0001-7924-3539 primary 'Rayan, B.' 4 ? primary 'Mostafavi, S.' 5 0000-0002-4330-3285 primary 'Monistrol, J.' 6 0000-0002-4634-818X primary 'Golubev, A.' 7 0000-0001-8519-7727 primary 'Gustavsson, E.' 8 0000-0003-0166-1786 primary 'Landau, M.' 9 0000-0002-1743-3430 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Citropin-1.3 _entity.formula_weight 1631.998 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GLFDIIKKVASVIGGL _entity_poly.pdbx_seq_one_letter_code_can GLFDIIKKVASVIGGL _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PHE n 1 4 ASP n 1 5 ILE n 1 6 ILE n 1 7 LYS n 1 8 LYS n 1 9 VAL n 1 10 ALA n 1 11 SER n 1 12 VAL n 1 13 ILE n 1 14 GLY n 1 15 GLY n 1 16 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Ranoidea citropa' _pdbx_entity_src_syn.organism_common_name 'Blue Mountains treefrog' _pdbx_entity_src_syn.ncbi_taxonomy_id 94770 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 44 44 GLY GLY A . n A 1 2 LEU 2 45 45 LEU LEU A . n A 1 3 PHE 3 46 46 PHE PHE A . n A 1 4 ASP 4 47 47 ASP ASP A . n A 1 5 ILE 5 48 48 ILE ILE A . n A 1 6 ILE 6 49 49 ILE ILE A . n A 1 7 LYS 7 50 50 LYS LYS A . n A 1 8 LYS 8 51 51 LYS LYS A . n A 1 9 VAL 9 52 52 VAL VAL A . n A 1 10 ALA 10 53 53 ALA ALA A . n A 1 11 SER 11 54 54 SER SER A . n A 1 12 VAL 12 55 55 VAL VAL A . n A 1 13 ILE 13 56 56 ILE ILE A . n A 1 14 GLY 14 57 57 GLY GLY A . n A 1 15 GLY 15 58 58 GLY GLY A . n A 1 16 LEU 16 59 59 LEU LEU A . n B 1 1 GLY 1 44 44 GLY GLY B . n B 1 2 LEU 2 45 45 LEU LEU B . n B 1 3 PHE 3 46 46 PHE PHE B . n B 1 4 ASP 4 47 47 ASP ASP B . n B 1 5 ILE 5 48 48 ILE ILE B . n B 1 6 ILE 6 49 49 ILE ILE B . n B 1 7 LYS 7 50 50 LYS LYS B . n B 1 8 LYS 8 51 51 LYS LYS B . n B 1 9 VAL 9 52 52 VAL VAL B . n B 1 10 ALA 10 53 53 ALA ALA B . n B 1 11 SER 11 54 54 SER SER B . n B 1 12 VAL 12 55 55 VAL VAL B . n B 1 13 ILE 13 56 56 ILE ILE B . n B 1 14 GLY 14 57 57 GLY GLY B . n B 1 15 GLY 15 58 58 GLY GLY B . n B 1 16 LEU 16 59 59 LEU LEU B . n C 1 1 GLY 1 44 44 GLY GLY C . n C 1 2 LEU 2 45 45 LEU LEU C . n C 1 3 PHE 3 46 46 PHE PHE C . n C 1 4 ASP 4 47 47 ASP ASP C . n C 1 5 ILE 5 48 48 ILE ILE C . n C 1 6 ILE 6 49 49 ILE ILE C . n C 1 7 LYS 7 50 50 LYS LYS C . n C 1 8 LYS 8 51 51 LYS LYS C . n C 1 9 VAL 9 52 52 VAL VAL C . n C 1 10 ALA 10 53 53 ALA ALA C . n C 1 11 SER 11 54 54 SER SER C . n C 1 12 VAL 12 55 55 VAL VAL C . n C 1 13 ILE 13 56 56 ILE ILE C . n C 1 14 GLY 14 57 57 GLY GLY C . n C 1 15 GLY 15 58 58 GLY GLY C . n C 1 16 LEU 16 59 59 LEU LEU C . n D 1 1 GLY 1 44 44 GLY GLY D . n D 1 2 LEU 2 45 45 LEU LEU D . n D 1 3 PHE 3 46 46 PHE PHE D . n D 1 4 ASP 4 47 47 ASP ASP D . n D 1 5 ILE 5 48 48 ILE ILE D . n D 1 6 ILE 6 49 49 ILE ILE D . n D 1 7 LYS 7 50 50 LYS LYS D . n D 1 8 LYS 8 51 51 LYS LYS D . n D 1 9 VAL 9 52 52 VAL VAL D . n D 1 10 ALA 10 53 53 ALA ALA D . n D 1 11 SER 11 54 54 SER SER D . n D 1 12 VAL 12 55 55 VAL VAL D . n D 1 13 ILE 13 56 56 ILE ILE D . n D 1 14 GLY 14 57 57 GLY GLY D . n D 1 15 GLY 15 58 58 GLY GLY D . n D 1 16 LEU 16 59 59 LEU LEU D . n E 1 1 GLY 1 44 44 GLY GLY E . n E 1 2 LEU 2 45 45 LEU LEU E . n E 1 3 PHE 3 46 46 PHE PHE E . n E 1 4 ASP 4 47 47 ASP ASP E . n E 1 5 ILE 5 48 48 ILE ILE E . n E 1 6 ILE 6 49 49 ILE ILE E . n E 1 7 LYS 7 50 50 LYS LYS E . n E 1 8 LYS 8 51 51 LYS LYS E . n E 1 9 VAL 9 52 52 VAL VAL E . n E 1 10 ALA 10 53 53 ALA ALA E . n E 1 11 SER 11 54 54 SER SER E . n E 1 12 VAL 12 55 55 VAL VAL E . n E 1 13 ILE 13 56 56 ILE ILE E . n E 1 14 GLY 14 57 57 GLY GLY E . n E 1 15 GLY 15 58 58 GLY GLY E . n E 1 16 LEU 16 59 59 LEU LEU E . n F 1 1 GLY 1 44 44 GLY GLY F . n F 1 2 LEU 2 45 45 LEU LEU F . n F 1 3 PHE 3 46 46 PHE PHE F . n F 1 4 ASP 4 47 47 ASP ASP F . n F 1 5 ILE 5 48 48 ILE ILE F . n F 1 6 ILE 6 49 49 ILE ILE F . n F 1 7 LYS 7 50 50 LYS LYS F . n F 1 8 LYS 8 51 51 LYS LYS F . n F 1 9 VAL 9 52 52 VAL VAL F . n F 1 10 ALA 10 53 53 ALA ALA F . n F 1 11 SER 11 54 54 SER SER F . n F 1 12 VAL 12 55 55 VAL VAL F . n F 1 13 ILE 13 56 56 ILE ILE F . n F 1 14 GLY 14 57 57 GLY GLY F . n F 1 15 GLY 15 58 58 GLY GLY F . n F 1 16 LEU 16 59 59 LEU LEU F . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9HI8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9HI8 _struct.title 'Amyloid fibril from the antimicrobial peptide citropin 1-3 - Polymorph Nr.3L' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9HI8 _struct_keywords.text 'Amyloid Helical, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CT13_RANCI _struct_ref.pdbx_db_accession P81846 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GLFDIIKKVASVIGGL _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9HI8 A 1 ? 16 ? P81846 1 ? 16 ? 44 59 2 1 9HI8 B 1 ? 16 ? P81846 1 ? 16 ? 44 59 3 1 9HI8 C 1 ? 16 ? P81846 1 ? 16 ? 44 59 4 1 9HI8 D 1 ? 16 ? P81846 1 ? 16 ? 44 59 5 1 9HI8 E 1 ? 16 ? P81846 1 ? 16 ? 44 59 6 1 9HI8 F 1 ? 16 ? P81846 1 ? 16 ? 44 59 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 3 ? ALA A 10 ? PHE A 46 ALA A 53 AA1 2 PHE F 3 ? GLY F 15 ? PHE F 46 GLY F 58 AA1 3 ILE A 13 ? GLY A 15 ? ILE A 56 GLY A 58 AA2 1 PHE A 3 ? ALA A 10 ? PHE A 46 ALA A 53 AA2 2 PHE F 3 ? GLY F 15 ? PHE F 46 GLY F 58 AA2 3 PHE D 3 ? GLY D 15 ? PHE D 46 GLY D 58 AA3 1 ASP B 4 ? ALA B 10 ? ASP B 47 ALA B 53 AA3 2 ASP C 4 ? ALA C 10 ? ASP C 47 ALA C 53 AA3 3 ASP E 4 ? ALA E 10 ? ASP E 47 ALA E 53 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 5 ? N ILE A 48 O ASP F 4 ? O ASP F 47 AA1 2 3 O GLY F 14 ? O GLY F 57 N GLY A 15 ? N GLY A 58 AA2 1 2 N ILE A 5 ? N ILE A 48 O ASP F 4 ? O ASP F 47 AA2 2 3 O ILE F 5 ? O ILE F 48 N ASP D 4 ? N ASP D 47 AA3 1 2 N ILE B 5 ? N ILE B 48 O ILE C 6 ? O ILE C 49 AA3 2 3 N ILE C 5 ? N ILE C 48 O ILE E 6 ? O ILE E 49 # _pdbx_entry_details.entry_id 9HI8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 52 ? ? CB A VAL 52 ? ? CG1 A VAL 52 ? ? 128.58 110.90 17.68 1.50 N 2 1 CA A VAL 55 ? ? CB A VAL 55 ? ? CG1 A VAL 55 ? ? 131.89 110.90 20.99 1.50 N 3 1 CA B VAL 52 ? ? CB B VAL 52 ? ? CG1 B VAL 52 ? ? 129.40 110.90 18.50 1.50 N 4 1 CA B VAL 55 ? ? CB B VAL 55 ? ? CG1 B VAL 55 ? ? 129.45 110.90 18.55 1.50 N 5 1 CA C VAL 52 ? ? CB C VAL 52 ? ? CG1 C VAL 52 ? ? 128.88 110.90 17.98 1.50 N 6 1 CA C VAL 55 ? ? CB C VAL 55 ? ? CG1 C VAL 55 ? ? 133.68 110.90 22.78 1.50 N 7 1 CA D VAL 52 ? ? CB D VAL 52 ? ? CG1 D VAL 52 ? ? 128.90 110.90 18.00 1.50 N 8 1 CA D VAL 55 ? ? CB D VAL 55 ? ? CG1 D VAL 55 ? ? 134.85 110.90 23.95 1.50 N 9 1 CA E VAL 52 ? ? CB E VAL 52 ? ? CG1 E VAL 52 ? ? 130.15 110.90 19.25 1.50 N 10 1 CA E VAL 55 ? ? CB E VAL 55 ? ? CG1 E VAL 55 ? ? 131.30 110.90 20.40 1.50 N 11 1 CA F VAL 52 ? ? CB F VAL 52 ? ? CG1 F VAL 52 ? ? 129.08 110.90 18.18 1.50 N 12 1 CA F VAL 55 ? ? CB F VAL 55 ? ? CG1 F VAL 55 ? ? 133.34 110.90 22.44 1.50 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9HI8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9HI8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.56 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 49778 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Amyloid fibril from the antimicrobial peptide citropin 1-3 - Polymorph Nr.3L' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9HI8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9HI8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9HI8 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLY N N N N 30 GLY CA C N N 31 GLY C C N N 32 GLY O O N N 33 GLY OXT O N N 34 GLY H H N N 35 GLY H2 H N N 36 GLY HA2 H N N 37 GLY HA3 H N N 38 GLY HXT H N N 39 ILE N N N N 40 ILE CA C N S 41 ILE C C N N 42 ILE O O N N 43 ILE CB C N S 44 ILE CG1 C N N 45 ILE CG2 C N N 46 ILE CD1 C N N 47 ILE OXT O N N 48 ILE H H N N 49 ILE H2 H N N 50 ILE HA H N N 51 ILE HB H N N 52 ILE HG12 H N N 53 ILE HG13 H N N 54 ILE HG21 H N N 55 ILE HG22 H N N 56 ILE HG23 H N N 57 ILE HD11 H N N 58 ILE HD12 H N N 59 ILE HD13 H N N 60 ILE HXT H N N 61 LEU N N N N 62 LEU CA C N S 63 LEU C C N N 64 LEU O O N N 65 LEU CB C N N 66 LEU CG C N N 67 LEU CD1 C N N 68 LEU CD2 C N N 69 LEU OXT O N N 70 LEU H H N N 71 LEU H2 H N N 72 LEU HA H N N 73 LEU HB2 H N N 74 LEU HB3 H N N 75 LEU HG H N N 76 LEU HD11 H N N 77 LEU HD12 H N N 78 LEU HD13 H N N 79 LEU HD21 H N N 80 LEU HD22 H N N 81 LEU HD23 H N N 82 LEU HXT H N N 83 LYS N N N N 84 LYS CA C N S 85 LYS C C N N 86 LYS O O N N 87 LYS CB C N N 88 LYS CG C N N 89 LYS CD C N N 90 LYS CE C N N 91 LYS NZ N N N 92 LYS OXT O N N 93 LYS H H N N 94 LYS H2 H N N 95 LYS HA H N N 96 LYS HB2 H N N 97 LYS HB3 H N N 98 LYS HG2 H N N 99 LYS HG3 H N N 100 LYS HD2 H N N 101 LYS HD3 H N N 102 LYS HE2 H N N 103 LYS HE3 H N N 104 LYS HZ1 H N N 105 LYS HZ2 H N N 106 LYS HZ3 H N N 107 LYS HXT H N N 108 PHE N N N N 109 PHE CA C N S 110 PHE C C N N 111 PHE O O N N 112 PHE CB C N N 113 PHE CG C Y N 114 PHE CD1 C Y N 115 PHE CD2 C Y N 116 PHE CE1 C Y N 117 PHE CE2 C Y N 118 PHE CZ C Y N 119 PHE OXT O N N 120 PHE H H N N 121 PHE H2 H N N 122 PHE HA H N N 123 PHE HB2 H N N 124 PHE HB3 H N N 125 PHE HD1 H N N 126 PHE HD2 H N N 127 PHE HE1 H N N 128 PHE HE2 H N N 129 PHE HZ H N N 130 PHE HXT H N N 131 SER N N N N 132 SER CA C N S 133 SER C C N N 134 SER O O N N 135 SER CB C N N 136 SER OG O N N 137 SER OXT O N N 138 SER H H N N 139 SER H2 H N N 140 SER HA H N N 141 SER HB2 H N N 142 SER HB3 H N N 143 SER HG H N N 144 SER HXT H N N 145 VAL N N N N 146 VAL CA C N S 147 VAL C C N N 148 VAL O O N N 149 VAL CB C N N 150 VAL CG1 C N N 151 VAL CG2 C N N 152 VAL OXT O N N 153 VAL H H N N 154 VAL H2 H N N 155 VAL HA H N N 156 VAL HB H N N 157 VAL HG11 H N N 158 VAL HG12 H N N 159 VAL HG13 H N N 160 VAL HG21 H N N 161 VAL HG22 H N N 162 VAL HG23 H N N 163 VAL HXT H N N 164 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLY N CA sing N N 28 GLY N H sing N N 29 GLY N H2 sing N N 30 GLY CA C sing N N 31 GLY CA HA2 sing N N 32 GLY CA HA3 sing N N 33 GLY C O doub N N 34 GLY C OXT sing N N 35 GLY OXT HXT sing N N 36 ILE N CA sing N N 37 ILE N H sing N N 38 ILE N H2 sing N N 39 ILE CA C sing N N 40 ILE CA CB sing N N 41 ILE CA HA sing N N 42 ILE C O doub N N 43 ILE C OXT sing N N 44 ILE CB CG1 sing N N 45 ILE CB CG2 sing N N 46 ILE CB HB sing N N 47 ILE CG1 CD1 sing N N 48 ILE CG1 HG12 sing N N 49 ILE CG1 HG13 sing N N 50 ILE CG2 HG21 sing N N 51 ILE CG2 HG22 sing N N 52 ILE CG2 HG23 sing N N 53 ILE CD1 HD11 sing N N 54 ILE CD1 HD12 sing N N 55 ILE CD1 HD13 sing N N 56 ILE OXT HXT sing N N 57 LEU N CA sing N N 58 LEU N H sing N N 59 LEU N H2 sing N N 60 LEU CA C sing N N 61 LEU CA CB sing N N 62 LEU CA HA sing N N 63 LEU C O doub N N 64 LEU C OXT sing N N 65 LEU CB CG sing N N 66 LEU CB HB2 sing N N 67 LEU CB HB3 sing N N 68 LEU CG CD1 sing N N 69 LEU CG CD2 sing N N 70 LEU CG HG sing N N 71 LEU CD1 HD11 sing N N 72 LEU CD1 HD12 sing N N 73 LEU CD1 HD13 sing N N 74 LEU CD2 HD21 sing N N 75 LEU CD2 HD22 sing N N 76 LEU CD2 HD23 sing N N 77 LEU OXT HXT sing N N 78 LYS N CA sing N N 79 LYS N H sing N N 80 LYS N H2 sing N N 81 LYS CA C sing N N 82 LYS CA CB sing N N 83 LYS CA HA sing N N 84 LYS C O doub N N 85 LYS C OXT sing N N 86 LYS CB CG sing N N 87 LYS CB HB2 sing N N 88 LYS CB HB3 sing N N 89 LYS CG CD sing N N 90 LYS CG HG2 sing N N 91 LYS CG HG3 sing N N 92 LYS CD CE sing N N 93 LYS CD HD2 sing N N 94 LYS CD HD3 sing N N 95 LYS CE NZ sing N N 96 LYS CE HE2 sing N N 97 LYS CE HE3 sing N N 98 LYS NZ HZ1 sing N N 99 LYS NZ HZ2 sing N N 100 LYS NZ HZ3 sing N N 101 LYS OXT HXT sing N N 102 PHE N CA sing N N 103 PHE N H sing N N 104 PHE N H2 sing N N 105 PHE CA C sing N N 106 PHE CA CB sing N N 107 PHE CA HA sing N N 108 PHE C O doub N N 109 PHE C OXT sing N N 110 PHE CB CG sing N N 111 PHE CB HB2 sing N N 112 PHE CB HB3 sing N N 113 PHE CG CD1 doub Y N 114 PHE CG CD2 sing Y N 115 PHE CD1 CE1 sing Y N 116 PHE CD1 HD1 sing N N 117 PHE CD2 CE2 doub Y N 118 PHE CD2 HD2 sing N N 119 PHE CE1 CZ doub Y N 120 PHE CE1 HE1 sing N N 121 PHE CE2 CZ sing Y N 122 PHE CE2 HE2 sing N N 123 PHE CZ HZ sing N N 124 PHE OXT HXT sing N N 125 SER N CA sing N N 126 SER N H sing N N 127 SER N H2 sing N N 128 SER CA C sing N N 129 SER CA CB sing N N 130 SER CA HA sing N N 131 SER C O doub N N 132 SER C OXT sing N N 133 SER CB OG sing N N 134 SER CB HB2 sing N N 135 SER CB HB3 sing N N 136 SER OG HG sing N N 137 SER OXT HXT sing N N 138 VAL N CA sing N N 139 VAL N H sing N N 140 VAL N H2 sing N N 141 VAL CA C sing N N 142 VAL CA CB sing N N 143 VAL CA HA sing N N 144 VAL C O doub N N 145 VAL C OXT sing N N 146 VAL CB CG1 sing N N 147 VAL CB CG2 sing N N 148 VAL CB HB sing N N 149 VAL CG1 HG11 sing N N 150 VAL CG1 HG12 sing N N 151 VAL CG1 HG13 sing N N 152 VAL CG2 HG21 sing N N 153 VAL CG2 HG22 sing N N 154 VAL CG2 HG23 sing N N 155 VAL OXT HXT sing N N 156 # _em_admin.current_status REL _em_admin.deposition_date 2024-11-25 _em_admin.deposition_site PDBE _em_admin.entry_id 9HI8 _em_admin.last_update 2025-10-01 _em_admin.map_release_date 2025-10-01 _em_admin.title 'Amyloid fibril from the antimicrobial peptide citropin 1-3 - Polymorph Nr.3L' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.16 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 94770 _em_entity_assembly_naturalsource.organism 'Ranoidea citropa' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -5.47 _em_helical_entity.axial_rise_per_subunit 4.74 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' 'European Union' 101087140 1 'Other private' 'United States' ? 2 # _atom_sites.entry_id 9HI8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #