HEADER SIGNALING PROTEIN 09-DEC-24 9HMH TITLE CRYSTAL STRUCTURE OF THE CALF DOMAINS OF INTEGRIN ALPHA5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD49 ANTIGEN-LIKE FAMILY MEMBER E,FIBRONECTIN RECEPTOR COMPND 5 SUBUNIT ALPHA,INTEGRIN ALPHA-F,VLA-5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: INTEGRIN ALPHA5 CALF DOMAINS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGA5, FNRA; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 274590 KEYWDS INTEGRIN, ALPHA5-INTEGRIN, ANGIOPOIETIN-2, ANGPT2, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.V.MURTHY,T.J.O.SIPILA,S.K.PONNA,V.M.L.LEPPANEN,P.I.SAHARINEN REVDAT 1 20-MAY-26 9HMH 0 JRNL AUTH T.SIPILA,A.V.MURTHY,S.K.PONNA,A.PINK,G.ENKAVI,I.VATTULAINEN, JRNL AUTH 2 V.M.LEPPANEN,P.SAHARINEN JRNL TITL ANGIOPOIETIN-2 INTERACTIONS WITH ACTIVE VS INACTIVE JRNL TITL 2 ALPHA5BETA1-INTEGRIN AT CELL-CELL JUNCTIONS DETERMINE JRNL TITL 3 TIE2-FOXO1 PATHWAY ACTIVATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 33797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.903 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.4180 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.03400 REMARK 3 B22 (A**2) : 3.13900 REMARK 3 B33 (A**2) : -0.10500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2585 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2421 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3512 ; 1.944 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5582 ; 0.757 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ;10.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ;16.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;17.715 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3048 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 588 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 515 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1147 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.258 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 6.424 ; 4.900 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1281 ; 6.424 ; 4.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1596 ; 8.803 ; 8.789 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1597 ; 8.802 ; 8.792 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 7.777 ; 5.775 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1305 ; 7.775 ; 5.777 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ;11.125 ;10.240 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1917 ;11.123 ;10.242 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9HMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1292143816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH 5.5, 0.2M MGCL2, 25% REMARK 280 PEG 3350 (WT/VOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.00800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.63300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.71850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.63300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.00800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.71850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 ILE A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 ASP A 33 REMARK 465 ARG A 97 REMARK 465 HIS A 98 REMARK 465 PRO A 99 REMARK 465 GLY A 100 REMARK 465 ASN A 101 REMARK 465 PHE A 102 REMARK 465 SER A 103 REMARK 465 HIS A 279 REMARK 465 GLN A 280 REMARK 465 GLN A 281 REMARK 465 LYS A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 PRO A 286 REMARK 465 SER A 287 REMARK 465 ARG A 288 REMARK 465 SER A 289 REMARK 465 SER A 290 REMARK 465 ALA A 291 REMARK 465 SER A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 PRO A 295 REMARK 465 LYS A 379 REMARK 465 ALA A 380 REMARK 465 GLU A 381 REMARK 465 GLY A 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 104 OG REMARK 470 THR A 378 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 34 SG CYS A 40 1.05 REMARK 500 H GLU A 51 O HOH A 706 1.43 REMARK 500 HG1 THR A 146 O HOH A 701 1.49 REMARK 500 HZ3 LYS A 354 O HOH A 716 1.54 REMARK 500 OD1 ASP A 198 HH12 ARG A 202 1.60 REMARK 500 H GLU A 74 O HOH A 722 1.60 REMARK 500 OG1 THR A 146 O HOH A 701 2.03 REMARK 500 OD1 ASN A 124 O HOH A 702 2.15 REMARK 500 O LEU A 82 O HOH A 703 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 300 CA - CB - SG ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 113 -130.97 59.92 REMARK 500 GLN A 114 50.82 -119.48 REMARK 500 ASN A 160 -163.69 -175.85 REMARK 500 VAL A 196 -118.86 -118.44 REMARK 500 PRO A 201 17.37 -67.72 REMARK 500 ARG A 202 58.46 28.19 REMARK 500 ASP A 203 -61.21 70.95 REMARK 500 PRO A 356 40.92 -90.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 104 LEU A 105 138.41 REMARK 500 SER A 197 ASP A 198 -138.55 REMARK 500 TRP A 199 HIS A 200 128.34 REMARK 500 PRO A 201 ARG A 202 -133.76 REMARK 500 LYS A 299 CYS A 300 -147.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 83 0.17 SIDE CHAIN REMARK 500 ARG A 137 0.14 SIDE CHAIN REMARK 500 ARG A 172 0.10 SIDE CHAIN REMARK 500 ARG A 202 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9HMH A 30 382 UNP P08648 ITA5_HUMAN 641 993 SEQADV 9HMH HIS A 24 UNP P08648 EXPRESSION TAG SEQADV 9HMH HIS A 25 UNP P08648 EXPRESSION TAG SEQADV 9HMH HIS A 26 UNP P08648 EXPRESSION TAG SEQADV 9HMH HIS A 27 UNP P08648 EXPRESSION TAG SEQADV 9HMH HIS A 28 UNP P08648 EXPRESSION TAG SEQADV 9HMH HIS A 29 UNP P08648 EXPRESSION TAG SEQRES 1 A 359 HIS HIS HIS HIS HIS HIS ILE LEU LEU ASP CYS GLY GLU SEQRES 2 A 359 ASP ASN ILE CYS VAL PRO ASP LEU GLN LEU GLU VAL PHE SEQRES 3 A 359 GLY GLU GLN ASN HIS VAL TYR LEU GLY ASP LYS ASN ALA SEQRES 4 A 359 LEU ASN LEU THR PHE HIS ALA GLN ASN VAL GLY GLU GLY SEQRES 5 A 359 GLY ALA TYR GLU ALA GLU LEU ARG VAL THR ALA PRO PRO SEQRES 6 A 359 GLU ALA GLU TYR SER GLY LEU VAL ARG HIS PRO GLY ASN SEQRES 7 A 359 PHE SER SER LEU SER CYS ASP TYR PHE ALA VAL ASN GLN SEQRES 8 A 359 SER ARG LEU LEU VAL CYS ASP LEU GLY ASN PRO MET LYS SEQRES 9 A 359 ALA GLY ALA SER LEU TRP GLY GLY LEU ARG PHE THR VAL SEQRES 10 A 359 PRO HIS LEU ARG ASP THR LYS LYS THR ILE GLN PHE ASP SEQRES 11 A 359 PHE GLN ILE LEU SER LYS ASN LEU ASN ASN SER GLN SER SEQRES 12 A 359 ASP VAL VAL SER PHE ARG LEU SER VAL GLU ALA GLN ALA SEQRES 13 A 359 GLN VAL THR LEU ASN GLY VAL SER LYS PRO GLU ALA VAL SEQRES 14 A 359 LEU PHE PRO VAL SER ASP TRP HIS PRO ARG ASP GLN PRO SEQRES 15 A 359 GLN LYS GLU GLU ASP LEU GLY PRO ALA VAL HIS HIS VAL SEQRES 16 A 359 TYR GLU LEU ILE ASN GLN GLY PRO SER SER ILE SER GLN SEQRES 17 A 359 GLY VAL LEU GLU LEU SER CYS PRO GLN ALA LEU GLU GLY SEQRES 18 A 359 GLN GLN LEU LEU TYR VAL THR ARG VAL THR GLY LEU ASN SEQRES 19 A 359 CYS THR THR ASN HIS PRO ILE ASN PRO LYS GLY LEU GLU SEQRES 20 A 359 LEU ASP PRO GLU GLY SER LEU HIS HIS GLN GLN LYS ARG SEQRES 21 A 359 GLU ALA PRO SER ARG SER SER ALA SER SER GLY PRO GLN SEQRES 22 A 359 ILE LEU LYS CYS PRO GLU ALA GLU CYS PHE ARG LEU ARG SEQRES 23 A 359 CYS GLU LEU GLY PRO LEU HIS GLN GLN GLU SER GLN SER SEQRES 24 A 359 LEU GLN LEU HIS PHE ARG VAL TRP ALA LYS THR PHE LEU SEQRES 25 A 359 GLN ARG GLU HIS GLN PRO PHE SER LEU GLN CYS GLU ALA SEQRES 26 A 359 VAL TYR LYS ALA LEU LYS MET PRO TYR ARG ILE LEU PRO SEQRES 27 A 359 ARG GLN LEU PRO GLN LYS GLU ARG GLN VAL ALA THR ALA SEQRES 28 A 359 VAL GLN TRP THR LYS ALA GLU GLY FORMUL 2 HOH *188(H2 O) HELIX 1 AA1 LYS A 207 LEU A 211 5 5 HELIX 2 AA2 TRP A 330 GLN A 336 1 7 SHEET 1 AA1 4 LEU A 44 PHE A 49 0 SHEET 2 AA1 4 LEU A 63 ASN A 71 -1 O GLN A 70 N GLN A 45 SHEET 3 AA1 4 SER A 131 THR A 139 -1 O LEU A 132 N ALA A 69 SHEET 4 AA1 4 GLU A 91 LEU A 95 -1 N SER A 93 O ARG A 137 SHEET 1 AA2 6 HIS A 54 TYR A 56 0 SHEET 2 AA2 6 VAL A 169 GLU A 176 1 O GLU A 176 N VAL A 55 SHEET 3 AA2 6 THR A 149 LEU A 157 -1 N ILE A 150 O LEU A 173 SHEET 4 AA2 6 ALA A 80 ALA A 86 -1 N ARG A 83 O GLN A 155 SHEET 5 AA2 6 SER A 115 GLY A 123 -1 O ARG A 116 N ALA A 86 SHEET 6 AA2 6 CYS A 107 VAL A 112 -1 N PHE A 110 O LEU A 117 SHEET 1 AA3 4 VAL A 181 LYS A 188 0 SHEET 2 AA3 4 ALA A 214 ASN A 223 -1 O HIS A 216 N LYS A 188 SHEET 3 AA3 4 GLU A 319 VAL A 329 -1 O GLN A 321 N LEU A 221 SHEET 4 AA3 4 LEU A 248 THR A 254 -1 N THR A 254 O GLN A 324 SHEET 1 AA4 6 ALA A 191 PHE A 194 0 SHEET 2 AA4 6 GLN A 366 TRP A 377 1 O GLN A 376 N VAL A 192 SHEET 3 AA4 6 PHE A 342 LYS A 354 -1 N ALA A 348 O ARG A 369 SHEET 4 AA4 6 GLN A 231 LEU A 242 -1 N GLU A 235 O VAL A 349 SHEET 5 AA4 6 GLU A 304 LEU A 312 -1 O GLU A 304 N ALA A 241 SHEET 6 AA4 6 ASN A 257 THR A 260 -1 N THR A 259 O ARG A 309 SHEET 1 AA5 4 GLN A 245 GLN A 246 0 SHEET 2 AA5 4 GLN A 231 LEU A 242 -1 N LEU A 242 O GLN A 245 SHEET 3 AA5 4 PHE A 342 LYS A 354 -1 O VAL A 349 N GLU A 235 SHEET 4 AA5 4 ILE A 297 LYS A 299 1 N LEU A 298 O SER A 343 SSBOND 1 CYS A 34 CYS A 40 1555 1555 2.18 SSBOND 2 CYS A 107 CYS A 120 1555 1555 2.52 SSBOND 3 CYS A 238 CYS A 346 1555 1555 2.41 SSBOND 4 CYS A 258 CYS A 310 1555 1555 2.37 SSBOND 5 CYS A 300 CYS A 305 1555 1555 2.52 CISPEP 1 ASN A 124 PRO A 125 0 4.36 CISPEP 2 LYS A 188 PRO A 189 0 -2.96 CISPEP 3 PHE A 194 PRO A 195 0 -16.67 CRYST1 50.016 71.437 121.266 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008246 0.00000 CONECT 6 84 CONECT 84 6 CONECT 967 1177 CONECT 1177 967 CONECT 2997 4462 CONECT 3307 3857 CONECT 3694 3759 CONECT 3759 3694 CONECT 3857 3307 CONECT 4462 2997 MASTER 385 0 0 2 24 0 0 6 2716 1 10 28 END