data_9HR6 # _entry.id 9HR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9HR6 pdb_00009hr6 10.2210/pdb9hr6/pdb WWPDB D_1292143990 ? ? EMDB EMD-52356 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-17 ? 2 'EM metadata' 1 0 2025-09-17 ? 3 FSC 1 0 2025-09-17 ? 4 'Half map' 1 0 2025-09-17 1 5 'Half map' 1 0 2025-09-17 2 6 Image 1 0 2025-09-17 ? 7 Mask 1 0 2025-09-17 1 8 'Primary map' 1 0 2025-09-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9HR6 _pdbx_database_status.recvd_initial_deposition_date 2024-12-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'ssNMR model' 9HR9 unspecified EMDB 'cryoEM structure of amyloid fibrils formed by human RIPK1' EMD-52356 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ivan.ubarrechena@ehu.eus _pdbx_contact_author.name_first Iban _pdbx_contact_author.name_last Ubarretxena-Belandia _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4082-4349 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lopez-Alonso, J.P.' 1 0000-0003-2081-2607 'Ubarretxena-Belandia, I.' 2 0000-0003-4082-4349 'Jiang, H.' 3 0009-0007-8359-8130 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Molecular Structure of Human Receptor Interacting Protein Kinase 1 (RIPK1) in its Fibrillar Conformation Elucidated by Solid-State NMR and Cryo-Electron Microscopy ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Polonio, P.' 1 0009-0006-0786-4655 primary 'Lopez-Alonso, J.P.' 2 0000-0003-2081-2607 primary 'Ubarretxena-Belandia, I.' 3 0000-0003-4082-4349 primary 'Jiang, H.' 4 0009-0007-8359-8130 primary 'Escobedo-Gonzales, F.C.' 5 0000-0003-0778-2255 primary 'Titaux-Delgado, G.A.' 6 0000-0002-3103-9085 primary 'Mompean, M.' 7 0000-0002-5608-3648 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Receptor-interacting serine/threonine-protein kinase 1' _entity.formula_weight 9656.604 _entity.pdbx_number_of_molecules 5 _entity.pdbx_ec 2.7.11.1 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cell death protein RIP,Receptor-interacting protein 1,RIP-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAI FDNTTSLT ; _entity_poly.pdbx_seq_one_letter_code_can ;HMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAI FDNTTSLT ; _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 PRO n 1 4 SER n 1 5 LEU n 1 6 HIS n 1 7 ASN n 1 8 ILE n 1 9 PRO n 1 10 VAL n 1 11 PRO n 1 12 GLU n 1 13 THR n 1 14 ASN n 1 15 TYR n 1 16 LEU n 1 17 GLY n 1 18 ASN n 1 19 THR n 1 20 PRO n 1 21 THR n 1 22 MET n 1 23 PRO n 1 24 PHE n 1 25 SER n 1 26 SER n 1 27 LEU n 1 28 PRO n 1 29 PRO n 1 30 THR n 1 31 ASP n 1 32 GLU n 1 33 SER n 1 34 ILE n 1 35 LYS n 1 36 TYR n 1 37 THR n 1 38 ILE n 1 39 TYR n 1 40 ASN n 1 41 SER n 1 42 THR n 1 43 GLY n 1 44 ILE n 1 45 GLN n 1 46 ILE n 1 47 GLY n 1 48 ALA n 1 49 TYR n 1 50 ASN n 1 51 TYR n 1 52 MET n 1 53 GLU n 1 54 ILE n 1 55 GLY n 1 56 GLY n 1 57 THR n 1 58 SER n 1 59 SER n 1 60 SER n 1 61 LEU n 1 62 LEU n 1 63 ASP n 1 64 SER n 1 65 THR n 1 66 ASN n 1 67 THR n 1 68 ASN n 1 69 PHE n 1 70 LYS n 1 71 GLU n 1 72 GLU n 1 73 PRO n 1 74 ALA n 1 75 ALA n 1 76 LYS n 1 77 TYR n 1 78 GLN n 1 79 ALA n 1 80 ILE n 1 81 PHE n 1 82 ASP n 1 83 ASN n 1 84 THR n 1 85 THR n 1 86 SER n 1 87 LEU n 1 88 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 88 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RIPK1, RIP, RIP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 HIS 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 PRO 9 9 ? ? ? A . n A 1 10 VAL 10 10 ? ? ? A . n A 1 11 PRO 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n A 1 13 THR 13 13 ? ? ? A . n A 1 14 ASN 14 14 ? ? ? A . n A 1 15 TYR 15 15 ? ? ? A . n A 1 16 LEU 16 16 ? ? ? A . n A 1 17 GLY 17 17 ? ? ? A . n A 1 18 ASN 18 18 ? ? ? A . n A 1 19 THR 19 19 ? ? ? A . n A 1 20 PRO 20 20 ? ? ? A . n A 1 21 THR 21 21 ? ? ? A . n A 1 22 MET 22 22 ? ? ? A . n A 1 23 PRO 23 23 ? ? ? A . n A 1 24 PHE 24 24 ? ? ? A . n A 1 25 SER 25 25 ? ? ? A . n A 1 26 SER 26 26 ? ? ? A . n A 1 27 LEU 27 27 ? ? ? A . n A 1 28 PRO 28 28 ? ? ? A . n A 1 29 PRO 29 29 ? ? ? A . n A 1 30 THR 30 30 ? ? ? A . n A 1 31 ASP 31 31 ? ? ? A . n A 1 32 GLU 32 32 ? ? ? A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 THR 57 57 ? ? ? A . n A 1 58 SER 58 58 ? ? ? A . n A 1 59 SER 59 59 ? ? ? A . n A 1 60 SER 60 60 ? ? ? A . n A 1 61 LEU 61 61 ? ? ? A . n A 1 62 LEU 62 62 ? ? ? A . n A 1 63 ASP 63 63 ? ? ? A . n A 1 64 SER 64 64 ? ? ? A . n A 1 65 THR 65 65 ? ? ? A . n A 1 66 ASN 66 66 ? ? ? A . n A 1 67 THR 67 67 ? ? ? A . n A 1 68 ASN 68 68 ? ? ? A . n A 1 69 PHE 69 69 ? ? ? A . n A 1 70 LYS 70 70 ? ? ? A . n A 1 71 GLU 71 71 ? ? ? A . n A 1 72 GLU 72 72 ? ? ? A . n A 1 73 PRO 73 73 ? ? ? A . n A 1 74 ALA 74 74 ? ? ? A . n A 1 75 ALA 75 75 ? ? ? A . n A 1 76 LYS 76 76 ? ? ? A . n A 1 77 TYR 77 77 ? ? ? A . n A 1 78 GLN 78 78 ? ? ? A . n A 1 79 ALA 79 79 ? ? ? A . n A 1 80 ILE 80 80 ? ? ? A . n A 1 81 PHE 81 81 ? ? ? A . n A 1 82 ASP 82 82 ? ? ? A . n A 1 83 ASN 83 83 ? ? ? A . n A 1 84 THR 84 84 ? ? ? A . n A 1 85 THR 85 85 ? ? ? A . n A 1 86 SER 86 86 ? ? ? A . n A 1 87 LEU 87 87 ? ? ? A . n A 1 88 THR 88 88 ? ? ? A . n B 1 1 HIS 1 1 ? ? ? B . n B 1 2 MET 2 2 ? ? ? B . n B 1 3 PRO 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 LEU 5 5 ? ? ? B . n B 1 6 HIS 6 6 ? ? ? B . n B 1 7 ASN 7 7 ? ? ? B . n B 1 8 ILE 8 8 ? ? ? B . n B 1 9 PRO 9 9 ? ? ? B . n B 1 10 VAL 10 10 ? ? ? B . n B 1 11 PRO 11 11 ? ? ? B . n B 1 12 GLU 12 12 ? ? ? B . n B 1 13 THR 13 13 ? ? ? B . n B 1 14 ASN 14 14 ? ? ? B . n B 1 15 TYR 15 15 ? ? ? B . n B 1 16 LEU 16 16 ? ? ? B . n B 1 17 GLY 17 17 ? ? ? B . n B 1 18 ASN 18 18 ? ? ? B . n B 1 19 THR 19 19 ? ? ? B . n B 1 20 PRO 20 20 ? ? ? B . n B 1 21 THR 21 21 ? ? ? B . n B 1 22 MET 22 22 ? ? ? B . n B 1 23 PRO 23 23 ? ? ? B . n B 1 24 PHE 24 24 ? ? ? B . n B 1 25 SER 25 25 ? ? ? B . n B 1 26 SER 26 26 ? ? ? B . n B 1 27 LEU 27 27 ? ? ? B . n B 1 28 PRO 28 28 ? ? ? B . n B 1 29 PRO 29 29 ? ? ? B . n B 1 30 THR 30 30 ? ? ? B . n B 1 31 ASP 31 31 ? ? ? B . n B 1 32 GLU 32 32 ? ? ? B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 TYR 36 36 36 TYR TYR B . n B 1 37 THR 37 37 37 THR THR B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 TYR 39 39 39 TYR TYR B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 THR 42 42 42 THR THR B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 TYR 49 49 49 TYR TYR B . n B 1 50 ASN 50 50 50 ASN ASN B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 MET 52 52 52 MET MET B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 THR 57 57 ? ? ? B . n B 1 58 SER 58 58 ? ? ? B . n B 1 59 SER 59 59 ? ? ? B . n B 1 60 SER 60 60 ? ? ? B . n B 1 61 LEU 61 61 ? ? ? B . n B 1 62 LEU 62 62 ? ? ? B . n B 1 63 ASP 63 63 ? ? ? B . n B 1 64 SER 64 64 ? ? ? B . n B 1 65 THR 65 65 ? ? ? B . n B 1 66 ASN 66 66 ? ? ? B . n B 1 67 THR 67 67 ? ? ? B . n B 1 68 ASN 68 68 ? ? ? B . n B 1 69 PHE 69 69 ? ? ? B . n B 1 70 LYS 70 70 ? ? ? B . n B 1 71 GLU 71 71 ? ? ? B . n B 1 72 GLU 72 72 ? ? ? B . n B 1 73 PRO 73 73 ? ? ? B . n B 1 74 ALA 74 74 ? ? ? B . n B 1 75 ALA 75 75 ? ? ? B . n B 1 76 LYS 76 76 ? ? ? B . n B 1 77 TYR 77 77 ? ? ? B . n B 1 78 GLN 78 78 ? ? ? B . n B 1 79 ALA 79 79 ? ? ? B . n B 1 80 ILE 80 80 ? ? ? B . n B 1 81 PHE 81 81 ? ? ? B . n B 1 82 ASP 82 82 ? ? ? B . n B 1 83 ASN 83 83 ? ? ? B . n B 1 84 THR 84 84 ? ? ? B . n B 1 85 THR 85 85 ? ? ? B . n B 1 86 SER 86 86 ? ? ? B . n B 1 87 LEU 87 87 ? ? ? B . n B 1 88 THR 88 88 ? ? ? B . n C 1 1 HIS 1 1 ? ? ? C . n C 1 2 MET 2 2 ? ? ? C . n C 1 3 PRO 3 3 ? ? ? C . n C 1 4 SER 4 4 ? ? ? C . n C 1 5 LEU 5 5 ? ? ? C . n C 1 6 HIS 6 6 ? ? ? C . n C 1 7 ASN 7 7 ? ? ? C . n C 1 8 ILE 8 8 ? ? ? C . n C 1 9 PRO 9 9 ? ? ? C . n C 1 10 VAL 10 10 ? ? ? C . n C 1 11 PRO 11 11 ? ? ? C . n C 1 12 GLU 12 12 ? ? ? C . n C 1 13 THR 13 13 ? ? ? C . n C 1 14 ASN 14 14 ? ? ? C . n C 1 15 TYR 15 15 ? ? ? C . n C 1 16 LEU 16 16 ? ? ? C . n C 1 17 GLY 17 17 ? ? ? C . n C 1 18 ASN 18 18 ? ? ? C . n C 1 19 THR 19 19 ? ? ? C . n C 1 20 PRO 20 20 ? ? ? C . n C 1 21 THR 21 21 ? ? ? C . n C 1 22 MET 22 22 ? ? ? C . n C 1 23 PRO 23 23 ? ? ? C . n C 1 24 PHE 24 24 ? ? ? C . n C 1 25 SER 25 25 ? ? ? C . n C 1 26 SER 26 26 ? ? ? C . n C 1 27 LEU 27 27 ? ? ? C . n C 1 28 PRO 28 28 ? ? ? C . n C 1 29 PRO 29 29 ? ? ? C . n C 1 30 THR 30 30 ? ? ? C . n C 1 31 ASP 31 31 ? ? ? C . n C 1 32 GLU 32 32 ? ? ? C . n C 1 33 SER 33 33 33 SER SER C . n C 1 34 ILE 34 34 34 ILE ILE C . n C 1 35 LYS 35 35 35 LYS LYS C . n C 1 36 TYR 36 36 36 TYR TYR C . n C 1 37 THR 37 37 37 THR THR C . n C 1 38 ILE 38 38 38 ILE ILE C . n C 1 39 TYR 39 39 39 TYR TYR C . n C 1 40 ASN 40 40 40 ASN ASN C . n C 1 41 SER 41 41 41 SER SER C . n C 1 42 THR 42 42 42 THR THR C . n C 1 43 GLY 43 43 43 GLY GLY C . n C 1 44 ILE 44 44 44 ILE ILE C . n C 1 45 GLN 45 45 45 GLN GLN C . n C 1 46 ILE 46 46 46 ILE ILE C . n C 1 47 GLY 47 47 47 GLY GLY C . n C 1 48 ALA 48 48 48 ALA ALA C . n C 1 49 TYR 49 49 49 TYR TYR C . n C 1 50 ASN 50 50 50 ASN ASN C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 MET 52 52 52 MET MET C . n C 1 53 GLU 53 53 53 GLU GLU C . n C 1 54 ILE 54 54 54 ILE ILE C . n C 1 55 GLY 55 55 55 GLY GLY C . n C 1 56 GLY 56 56 56 GLY GLY C . n C 1 57 THR 57 57 ? ? ? C . n C 1 58 SER 58 58 ? ? ? C . n C 1 59 SER 59 59 ? ? ? C . n C 1 60 SER 60 60 ? ? ? C . n C 1 61 LEU 61 61 ? ? ? C . n C 1 62 LEU 62 62 ? ? ? C . n C 1 63 ASP 63 63 ? ? ? C . n C 1 64 SER 64 64 ? ? ? C . n C 1 65 THR 65 65 ? ? ? C . n C 1 66 ASN 66 66 ? ? ? C . n C 1 67 THR 67 67 ? ? ? C . n C 1 68 ASN 68 68 ? ? ? C . n C 1 69 PHE 69 69 ? ? ? C . n C 1 70 LYS 70 70 ? ? ? C . n C 1 71 GLU 71 71 ? ? ? C . n C 1 72 GLU 72 72 ? ? ? C . n C 1 73 PRO 73 73 ? ? ? C . n C 1 74 ALA 74 74 ? ? ? C . n C 1 75 ALA 75 75 ? ? ? C . n C 1 76 LYS 76 76 ? ? ? C . n C 1 77 TYR 77 77 ? ? ? C . n C 1 78 GLN 78 78 ? ? ? C . n C 1 79 ALA 79 79 ? ? ? C . n C 1 80 ILE 80 80 ? ? ? C . n C 1 81 PHE 81 81 ? ? ? C . n C 1 82 ASP 82 82 ? ? ? C . n C 1 83 ASN 83 83 ? ? ? C . n C 1 84 THR 84 84 ? ? ? C . n C 1 85 THR 85 85 ? ? ? C . n C 1 86 SER 86 86 ? ? ? C . n C 1 87 LEU 87 87 ? ? ? C . n C 1 88 THR 88 88 ? ? ? C . n D 1 1 HIS 1 1 ? ? ? D . n D 1 2 MET 2 2 ? ? ? D . n D 1 3 PRO 3 3 ? ? ? D . n D 1 4 SER 4 4 ? ? ? D . n D 1 5 LEU 5 5 ? ? ? D . n D 1 6 HIS 6 6 ? ? ? D . n D 1 7 ASN 7 7 ? ? ? D . n D 1 8 ILE 8 8 ? ? ? D . n D 1 9 PRO 9 9 ? ? ? D . n D 1 10 VAL 10 10 ? ? ? D . n D 1 11 PRO 11 11 ? ? ? D . n D 1 12 GLU 12 12 ? ? ? D . n D 1 13 THR 13 13 ? ? ? D . n D 1 14 ASN 14 14 ? ? ? D . n D 1 15 TYR 15 15 ? ? ? D . n D 1 16 LEU 16 16 ? ? ? D . n D 1 17 GLY 17 17 ? ? ? D . n D 1 18 ASN 18 18 ? ? ? D . n D 1 19 THR 19 19 ? ? ? D . n D 1 20 PRO 20 20 ? ? ? D . n D 1 21 THR 21 21 ? ? ? D . n D 1 22 MET 22 22 ? ? ? D . n D 1 23 PRO 23 23 ? ? ? D . n D 1 24 PHE 24 24 ? ? ? D . n D 1 25 SER 25 25 ? ? ? D . n D 1 26 SER 26 26 ? ? ? D . n D 1 27 LEU 27 27 ? ? ? D . n D 1 28 PRO 28 28 ? ? ? D . n D 1 29 PRO 29 29 ? ? ? D . n D 1 30 THR 30 30 ? ? ? D . n D 1 31 ASP 31 31 ? ? ? D . n D 1 32 GLU 32 32 ? ? ? D . n D 1 33 SER 33 33 33 SER SER D . n D 1 34 ILE 34 34 34 ILE ILE D . n D 1 35 LYS 35 35 35 LYS LYS D . n D 1 36 TYR 36 36 36 TYR TYR D . n D 1 37 THR 37 37 37 THR THR D . n D 1 38 ILE 38 38 38 ILE ILE D . n D 1 39 TYR 39 39 39 TYR TYR D . n D 1 40 ASN 40 40 40 ASN ASN D . n D 1 41 SER 41 41 41 SER SER D . n D 1 42 THR 42 42 42 THR THR D . n D 1 43 GLY 43 43 43 GLY GLY D . n D 1 44 ILE 44 44 44 ILE ILE D . n D 1 45 GLN 45 45 45 GLN GLN D . n D 1 46 ILE 46 46 46 ILE ILE D . n D 1 47 GLY 47 47 47 GLY GLY D . n D 1 48 ALA 48 48 48 ALA ALA D . n D 1 49 TYR 49 49 49 TYR TYR D . n D 1 50 ASN 50 50 50 ASN ASN D . n D 1 51 TYR 51 51 51 TYR TYR D . n D 1 52 MET 52 52 52 MET MET D . n D 1 53 GLU 53 53 53 GLU GLU D . n D 1 54 ILE 54 54 54 ILE ILE D . n D 1 55 GLY 55 55 55 GLY GLY D . n D 1 56 GLY 56 56 56 GLY GLY D . n D 1 57 THR 57 57 ? ? ? D . n D 1 58 SER 58 58 ? ? ? D . n D 1 59 SER 59 59 ? ? ? D . n D 1 60 SER 60 60 ? ? ? D . n D 1 61 LEU 61 61 ? ? ? D . n D 1 62 LEU 62 62 ? ? ? D . n D 1 63 ASP 63 63 ? ? ? D . n D 1 64 SER 64 64 ? ? ? D . n D 1 65 THR 65 65 ? ? ? D . n D 1 66 ASN 66 66 ? ? ? D . n D 1 67 THR 67 67 ? ? ? D . n D 1 68 ASN 68 68 ? ? ? D . n D 1 69 PHE 69 69 ? ? ? D . n D 1 70 LYS 70 70 ? ? ? D . n D 1 71 GLU 71 71 ? ? ? D . n D 1 72 GLU 72 72 ? ? ? D . n D 1 73 PRO 73 73 ? ? ? D . n D 1 74 ALA 74 74 ? ? ? D . n D 1 75 ALA 75 75 ? ? ? D . n D 1 76 LYS 76 76 ? ? ? D . n D 1 77 TYR 77 77 ? ? ? D . n D 1 78 GLN 78 78 ? ? ? D . n D 1 79 ALA 79 79 ? ? ? D . n D 1 80 ILE 80 80 ? ? ? D . n D 1 81 PHE 81 81 ? ? ? D . n D 1 82 ASP 82 82 ? ? ? D . n D 1 83 ASN 83 83 ? ? ? D . n D 1 84 THR 84 84 ? ? ? D . n D 1 85 THR 85 85 ? ? ? D . n D 1 86 SER 86 86 ? ? ? D . n D 1 87 LEU 87 87 ? ? ? D . n D 1 88 THR 88 88 ? ? ? D . n E 1 1 HIS 1 1 ? ? ? E . n E 1 2 MET 2 2 ? ? ? E . n E 1 3 PRO 3 3 ? ? ? E . n E 1 4 SER 4 4 ? ? ? E . n E 1 5 LEU 5 5 ? ? ? E . n E 1 6 HIS 6 6 ? ? ? E . n E 1 7 ASN 7 7 ? ? ? E . n E 1 8 ILE 8 8 ? ? ? E . n E 1 9 PRO 9 9 ? ? ? E . n E 1 10 VAL 10 10 ? ? ? E . n E 1 11 PRO 11 11 ? ? ? E . n E 1 12 GLU 12 12 ? ? ? E . n E 1 13 THR 13 13 ? ? ? E . n E 1 14 ASN 14 14 ? ? ? E . n E 1 15 TYR 15 15 ? ? ? E . n E 1 16 LEU 16 16 ? ? ? E . n E 1 17 GLY 17 17 ? ? ? E . n E 1 18 ASN 18 18 ? ? ? E . n E 1 19 THR 19 19 ? ? ? E . n E 1 20 PRO 20 20 ? ? ? E . n E 1 21 THR 21 21 ? ? ? E . n E 1 22 MET 22 22 ? ? ? E . n E 1 23 PRO 23 23 ? ? ? E . n E 1 24 PHE 24 24 ? ? ? E . n E 1 25 SER 25 25 ? ? ? E . n E 1 26 SER 26 26 ? ? ? E . n E 1 27 LEU 27 27 ? ? ? E . n E 1 28 PRO 28 28 ? ? ? E . n E 1 29 PRO 29 29 ? ? ? E . n E 1 30 THR 30 30 ? ? ? E . n E 1 31 ASP 31 31 ? ? ? E . n E 1 32 GLU 32 32 ? ? ? E . n E 1 33 SER 33 33 33 SER SER E . n E 1 34 ILE 34 34 34 ILE ILE E . n E 1 35 LYS 35 35 35 LYS LYS E . n E 1 36 TYR 36 36 36 TYR TYR E . n E 1 37 THR 37 37 37 THR THR E . n E 1 38 ILE 38 38 38 ILE ILE E . n E 1 39 TYR 39 39 39 TYR TYR E . n E 1 40 ASN 40 40 40 ASN ASN E . n E 1 41 SER 41 41 41 SER SER E . n E 1 42 THR 42 42 42 THR THR E . n E 1 43 GLY 43 43 43 GLY GLY E . n E 1 44 ILE 44 44 44 ILE ILE E . n E 1 45 GLN 45 45 45 GLN GLN E . n E 1 46 ILE 46 46 46 ILE ILE E . n E 1 47 GLY 47 47 47 GLY GLY E . n E 1 48 ALA 48 48 48 ALA ALA E . n E 1 49 TYR 49 49 49 TYR TYR E . n E 1 50 ASN 50 50 50 ASN ASN E . n E 1 51 TYR 51 51 51 TYR TYR E . n E 1 52 MET 52 52 52 MET MET E . n E 1 53 GLU 53 53 53 GLU GLU E . n E 1 54 ILE 54 54 54 ILE ILE E . n E 1 55 GLY 55 55 55 GLY GLY E . n E 1 56 GLY 56 56 56 GLY GLY E . n E 1 57 THR 57 57 ? ? ? E . n E 1 58 SER 58 58 ? ? ? E . n E 1 59 SER 59 59 ? ? ? E . n E 1 60 SER 60 60 ? ? ? E . n E 1 61 LEU 61 61 ? ? ? E . n E 1 62 LEU 62 62 ? ? ? E . n E 1 63 ASP 63 63 ? ? ? E . n E 1 64 SER 64 64 ? ? ? E . n E 1 65 THR 65 65 ? ? ? E . n E 1 66 ASN 66 66 ? ? ? E . n E 1 67 THR 67 67 ? ? ? E . n E 1 68 ASN 68 68 ? ? ? E . n E 1 69 PHE 69 69 ? ? ? E . n E 1 70 LYS 70 70 ? ? ? E . n E 1 71 GLU 71 71 ? ? ? E . n E 1 72 GLU 72 72 ? ? ? E . n E 1 73 PRO 73 73 ? ? ? E . n E 1 74 ALA 74 74 ? ? ? E . n E 1 75 ALA 75 75 ? ? ? E . n E 1 76 LYS 76 76 ? ? ? E . n E 1 77 TYR 77 77 ? ? ? E . n E 1 78 GLN 78 78 ? ? ? E . n E 1 79 ALA 79 79 ? ? ? E . n E 1 80 ILE 80 80 ? ? ? E . n E 1 81 PHE 81 81 ? ? ? E . n E 1 82 ASP 82 82 ? ? ? E . n E 1 83 ASN 83 83 ? ? ? E . n E 1 84 THR 84 84 ? ? ? E . n E 1 85 THR 85 85 ? ? ? E . n E 1 86 SER 86 86 ? ? ? E . n E 1 87 LEU 87 87 ? ? ? E . n E 1 88 THR 88 88 ? ? ? E . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9HR6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9HR6 _struct.title 'cryoEM structure of amyloid fibrils formed by human RIPK1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9HR6 _struct_keywords.text 'Amyloid, kinase, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RIPK1_HUMAN _struct_ref.pdbx_db_accession Q13546 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQIGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAI FDNTTSLT ; _struct_ref.pdbx_align_begin 496 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9HR6 A 1 ? 88 ? Q13546 496 ? 583 ? 1 88 2 1 9HR6 B 1 ? 88 ? Q13546 496 ? 583 ? 1 88 3 1 9HR6 C 1 ? 88 ? Q13546 496 ? 583 ? 1 88 4 1 9HR6 D 1 ? 88 ? Q13546 496 ? 583 ? 1 88 5 1 9HR6 E 1 ? 88 ? Q13546 496 ? 583 ? 1 88 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 35 ? TYR A 39 ? LYS A 35 TYR A 39 AA1 2 LYS B 35 ? TYR B 39 ? LYS B 35 TYR B 39 AA1 3 LYS C 35 ? TYR C 39 ? LYS C 35 TYR C 39 AA1 4 LYS D 35 ? TYR D 39 ? LYS D 35 TYR D 39 AA1 5 LYS E 35 ? TYR E 39 ? LYS E 35 TYR E 39 AA2 1 THR A 42 ? ILE A 46 ? THR A 42 ILE A 46 AA2 2 THR B 42 ? ILE B 46 ? THR B 42 ILE B 46 AA2 3 THR C 42 ? ILE C 46 ? THR C 42 ILE C 46 AA2 4 THR D 42 ? ILE D 46 ? THR D 42 ILE D 46 AA2 5 THR E 42 ? ILE E 46 ? THR E 42 ILE E 46 AA3 1 TYR A 51 ? ILE A 54 ? TYR A 51 ILE A 54 AA3 2 TYR B 51 ? ILE B 54 ? TYR B 51 ILE B 54 AA3 3 TYR C 51 ? ILE C 54 ? TYR C 51 ILE C 54 AA3 4 TYR D 51 ? ILE D 54 ? TYR D 51 ILE D 54 AA3 5 TYR E 51 ? ILE E 54 ? TYR E 51 ILE E 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 35 ? N LYS A 35 O TYR B 36 ? O TYR B 36 AA1 2 3 N LYS B 35 ? N LYS B 35 O TYR C 36 ? O TYR C 36 AA1 3 4 N LYS C 35 ? N LYS C 35 O TYR D 36 ? O TYR D 36 AA1 4 5 N LYS D 35 ? N LYS D 35 O TYR E 36 ? O TYR E 36 AA2 1 2 N GLN A 45 ? N GLN A 45 O ILE B 44 ? O ILE B 44 AA2 2 3 N GLN B 45 ? N GLN B 45 O ILE C 44 ? O ILE C 44 AA2 3 4 N GLN C 45 ? N GLN C 45 O ILE D 44 ? O ILE D 44 AA2 4 5 N GLN D 45 ? N GLN D 45 O ILE E 44 ? O ILE E 44 AA3 1 2 N ILE A 54 ? N ILE A 54 O GLU B 53 ? O GLU B 53 AA3 2 3 N ILE B 54 ? N ILE B 54 O GLU C 53 ? O GLU C 53 AA3 3 4 N ILE C 54 ? N ILE C 54 O GLU D 53 ? O GLU D 53 AA3 4 5 N ILE D 54 ? N ILE D 54 O GLU E 53 ? O GLU E 53 # _pdbx_entry_details.entry_id 9HR6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9HR6 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 66.05 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details 'ModelAngelo using sequence' _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9HR6 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.57 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 460173 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'hRIPK1 RHIM-mediated amyloid fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9HR6 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9HR6 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source LAB6 _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details '9 mA' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9HR6 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'time 5.5s, blotting force 2' # _em_experiment.entry_id 9HR6 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 1 ? A HIS 1 2 1 Y 1 A MET 2 ? A MET 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A HIS 6 ? A HIS 6 7 1 Y 1 A ASN 7 ? A ASN 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A PRO 9 ? A PRO 9 10 1 Y 1 A VAL 10 ? A VAL 10 11 1 Y 1 A PRO 11 ? A PRO 11 12 1 Y 1 A GLU 12 ? A GLU 12 13 1 Y 1 A THR 13 ? A THR 13 14 1 Y 1 A ASN 14 ? A ASN 14 15 1 Y 1 A TYR 15 ? A TYR 15 16 1 Y 1 A LEU 16 ? A LEU 16 17 1 Y 1 A GLY 17 ? A GLY 17 18 1 Y 1 A ASN 18 ? A ASN 18 19 1 Y 1 A THR 19 ? A THR 19 20 1 Y 1 A PRO 20 ? A PRO 20 21 1 Y 1 A THR 21 ? A THR 21 22 1 Y 1 A MET 22 ? A MET 22 23 1 Y 1 A PRO 23 ? A PRO 23 24 1 Y 1 A PHE 24 ? A PHE 24 25 1 Y 1 A SER 25 ? A SER 25 26 1 Y 1 A SER 26 ? A SER 26 27 1 Y 1 A LEU 27 ? A LEU 27 28 1 Y 1 A PRO 28 ? A PRO 28 29 1 Y 1 A PRO 29 ? A PRO 29 30 1 Y 1 A THR 30 ? A THR 30 31 1 Y 1 A ASP 31 ? A ASP 31 32 1 Y 1 A GLU 32 ? A GLU 32 33 1 Y 1 A THR 57 ? A THR 57 34 1 Y 1 A SER 58 ? A SER 58 35 1 Y 1 A SER 59 ? A SER 59 36 1 Y 1 A SER 60 ? A SER 60 37 1 Y 1 A LEU 61 ? A LEU 61 38 1 Y 1 A LEU 62 ? A LEU 62 39 1 Y 1 A ASP 63 ? A ASP 63 40 1 Y 1 A SER 64 ? A SER 64 41 1 Y 1 A THR 65 ? A THR 65 42 1 Y 1 A ASN 66 ? A ASN 66 43 1 Y 1 A THR 67 ? A THR 67 44 1 Y 1 A ASN 68 ? A ASN 68 45 1 Y 1 A PHE 69 ? A PHE 69 46 1 Y 1 A LYS 70 ? A LYS 70 47 1 Y 1 A GLU 71 ? A GLU 71 48 1 Y 1 A GLU 72 ? A GLU 72 49 1 Y 1 A PRO 73 ? A PRO 73 50 1 Y 1 A ALA 74 ? A ALA 74 51 1 Y 1 A ALA 75 ? A ALA 75 52 1 Y 1 A LYS 76 ? A LYS 76 53 1 Y 1 A TYR 77 ? A TYR 77 54 1 Y 1 A GLN 78 ? A GLN 78 55 1 Y 1 A ALA 79 ? A ALA 79 56 1 Y 1 A ILE 80 ? A ILE 80 57 1 Y 1 A PHE 81 ? A PHE 81 58 1 Y 1 A ASP 82 ? A ASP 82 59 1 Y 1 A ASN 83 ? A ASN 83 60 1 Y 1 A THR 84 ? A THR 84 61 1 Y 1 A THR 85 ? A THR 85 62 1 Y 1 A SER 86 ? A SER 86 63 1 Y 1 A LEU 87 ? A LEU 87 64 1 Y 1 A THR 88 ? A THR 88 65 1 Y 1 B HIS 1 ? B HIS 1 66 1 Y 1 B MET 2 ? B MET 2 67 1 Y 1 B PRO 3 ? B PRO 3 68 1 Y 1 B SER 4 ? B SER 4 69 1 Y 1 B LEU 5 ? B LEU 5 70 1 Y 1 B HIS 6 ? B HIS 6 71 1 Y 1 B ASN 7 ? B ASN 7 72 1 Y 1 B ILE 8 ? B ILE 8 73 1 Y 1 B PRO 9 ? B PRO 9 74 1 Y 1 B VAL 10 ? B VAL 10 75 1 Y 1 B PRO 11 ? B PRO 11 76 1 Y 1 B GLU 12 ? B GLU 12 77 1 Y 1 B THR 13 ? B THR 13 78 1 Y 1 B ASN 14 ? B ASN 14 79 1 Y 1 B TYR 15 ? B TYR 15 80 1 Y 1 B LEU 16 ? B LEU 16 81 1 Y 1 B GLY 17 ? B GLY 17 82 1 Y 1 B ASN 18 ? B ASN 18 83 1 Y 1 B THR 19 ? B THR 19 84 1 Y 1 B PRO 20 ? B PRO 20 85 1 Y 1 B THR 21 ? B THR 21 86 1 Y 1 B MET 22 ? B MET 22 87 1 Y 1 B PRO 23 ? B PRO 23 88 1 Y 1 B PHE 24 ? B PHE 24 89 1 Y 1 B SER 25 ? B SER 25 90 1 Y 1 B SER 26 ? B SER 26 91 1 Y 1 B LEU 27 ? B LEU 27 92 1 Y 1 B PRO 28 ? B PRO 28 93 1 Y 1 B PRO 29 ? B PRO 29 94 1 Y 1 B THR 30 ? B THR 30 95 1 Y 1 B ASP 31 ? B ASP 31 96 1 Y 1 B GLU 32 ? B GLU 32 97 1 Y 1 B THR 57 ? B THR 57 98 1 Y 1 B SER 58 ? B SER 58 99 1 Y 1 B SER 59 ? B SER 59 100 1 Y 1 B SER 60 ? B SER 60 101 1 Y 1 B LEU 61 ? B LEU 61 102 1 Y 1 B LEU 62 ? B LEU 62 103 1 Y 1 B ASP 63 ? B ASP 63 104 1 Y 1 B SER 64 ? B SER 64 105 1 Y 1 B THR 65 ? B THR 65 106 1 Y 1 B ASN 66 ? B ASN 66 107 1 Y 1 B THR 67 ? B THR 67 108 1 Y 1 B ASN 68 ? B ASN 68 109 1 Y 1 B PHE 69 ? B PHE 69 110 1 Y 1 B LYS 70 ? B LYS 70 111 1 Y 1 B GLU 71 ? B GLU 71 112 1 Y 1 B GLU 72 ? B GLU 72 113 1 Y 1 B PRO 73 ? B PRO 73 114 1 Y 1 B ALA 74 ? B ALA 74 115 1 Y 1 B ALA 75 ? B ALA 75 116 1 Y 1 B LYS 76 ? B LYS 76 117 1 Y 1 B TYR 77 ? B TYR 77 118 1 Y 1 B GLN 78 ? B GLN 78 119 1 Y 1 B ALA 79 ? B ALA 79 120 1 Y 1 B ILE 80 ? B ILE 80 121 1 Y 1 B PHE 81 ? B PHE 81 122 1 Y 1 B ASP 82 ? B ASP 82 123 1 Y 1 B ASN 83 ? B ASN 83 124 1 Y 1 B THR 84 ? B THR 84 125 1 Y 1 B THR 85 ? B THR 85 126 1 Y 1 B SER 86 ? B SER 86 127 1 Y 1 B LEU 87 ? B LEU 87 128 1 Y 1 B THR 88 ? B THR 88 129 1 Y 1 C HIS 1 ? C HIS 1 130 1 Y 1 C MET 2 ? C MET 2 131 1 Y 1 C PRO 3 ? C PRO 3 132 1 Y 1 C SER 4 ? C SER 4 133 1 Y 1 C LEU 5 ? C LEU 5 134 1 Y 1 C HIS 6 ? C HIS 6 135 1 Y 1 C ASN 7 ? C ASN 7 136 1 Y 1 C ILE 8 ? C ILE 8 137 1 Y 1 C PRO 9 ? C PRO 9 138 1 Y 1 C VAL 10 ? C VAL 10 139 1 Y 1 C PRO 11 ? C PRO 11 140 1 Y 1 C GLU 12 ? C GLU 12 141 1 Y 1 C THR 13 ? C THR 13 142 1 Y 1 C ASN 14 ? C ASN 14 143 1 Y 1 C TYR 15 ? C TYR 15 144 1 Y 1 C LEU 16 ? C LEU 16 145 1 Y 1 C GLY 17 ? C GLY 17 146 1 Y 1 C ASN 18 ? C ASN 18 147 1 Y 1 C THR 19 ? C THR 19 148 1 Y 1 C PRO 20 ? C PRO 20 149 1 Y 1 C THR 21 ? C THR 21 150 1 Y 1 C MET 22 ? C MET 22 151 1 Y 1 C PRO 23 ? C PRO 23 152 1 Y 1 C PHE 24 ? C PHE 24 153 1 Y 1 C SER 25 ? C SER 25 154 1 Y 1 C SER 26 ? C SER 26 155 1 Y 1 C LEU 27 ? C LEU 27 156 1 Y 1 C PRO 28 ? C PRO 28 157 1 Y 1 C PRO 29 ? C PRO 29 158 1 Y 1 C THR 30 ? C THR 30 159 1 Y 1 C ASP 31 ? C ASP 31 160 1 Y 1 C GLU 32 ? C GLU 32 161 1 Y 1 C THR 57 ? C THR 57 162 1 Y 1 C SER 58 ? C SER 58 163 1 Y 1 C SER 59 ? C SER 59 164 1 Y 1 C SER 60 ? C SER 60 165 1 Y 1 C LEU 61 ? C LEU 61 166 1 Y 1 C LEU 62 ? C LEU 62 167 1 Y 1 C ASP 63 ? C ASP 63 168 1 Y 1 C SER 64 ? C SER 64 169 1 Y 1 C THR 65 ? C THR 65 170 1 Y 1 C ASN 66 ? C ASN 66 171 1 Y 1 C THR 67 ? C THR 67 172 1 Y 1 C ASN 68 ? C ASN 68 173 1 Y 1 C PHE 69 ? C PHE 69 174 1 Y 1 C LYS 70 ? C LYS 70 175 1 Y 1 C GLU 71 ? C GLU 71 176 1 Y 1 C GLU 72 ? C GLU 72 177 1 Y 1 C PRO 73 ? C PRO 73 178 1 Y 1 C ALA 74 ? C ALA 74 179 1 Y 1 C ALA 75 ? C ALA 75 180 1 Y 1 C LYS 76 ? C LYS 76 181 1 Y 1 C TYR 77 ? C TYR 77 182 1 Y 1 C GLN 78 ? C GLN 78 183 1 Y 1 C ALA 79 ? C ALA 79 184 1 Y 1 C ILE 80 ? C ILE 80 185 1 Y 1 C PHE 81 ? C PHE 81 186 1 Y 1 C ASP 82 ? C ASP 82 187 1 Y 1 C ASN 83 ? C ASN 83 188 1 Y 1 C THR 84 ? C THR 84 189 1 Y 1 C THR 85 ? C THR 85 190 1 Y 1 C SER 86 ? C SER 86 191 1 Y 1 C LEU 87 ? C LEU 87 192 1 Y 1 C THR 88 ? C THR 88 193 1 Y 1 D HIS 1 ? D HIS 1 194 1 Y 1 D MET 2 ? D MET 2 195 1 Y 1 D PRO 3 ? D PRO 3 196 1 Y 1 D SER 4 ? D SER 4 197 1 Y 1 D LEU 5 ? D LEU 5 198 1 Y 1 D HIS 6 ? D HIS 6 199 1 Y 1 D ASN 7 ? D ASN 7 200 1 Y 1 D ILE 8 ? D ILE 8 201 1 Y 1 D PRO 9 ? D PRO 9 202 1 Y 1 D VAL 10 ? D VAL 10 203 1 Y 1 D PRO 11 ? D PRO 11 204 1 Y 1 D GLU 12 ? D GLU 12 205 1 Y 1 D THR 13 ? D THR 13 206 1 Y 1 D ASN 14 ? D ASN 14 207 1 Y 1 D TYR 15 ? D TYR 15 208 1 Y 1 D LEU 16 ? D LEU 16 209 1 Y 1 D GLY 17 ? D GLY 17 210 1 Y 1 D ASN 18 ? D ASN 18 211 1 Y 1 D THR 19 ? D THR 19 212 1 Y 1 D PRO 20 ? D PRO 20 213 1 Y 1 D THR 21 ? D THR 21 214 1 Y 1 D MET 22 ? D MET 22 215 1 Y 1 D PRO 23 ? D PRO 23 216 1 Y 1 D PHE 24 ? D PHE 24 217 1 Y 1 D SER 25 ? D SER 25 218 1 Y 1 D SER 26 ? D SER 26 219 1 Y 1 D LEU 27 ? D LEU 27 220 1 Y 1 D PRO 28 ? D PRO 28 221 1 Y 1 D PRO 29 ? D PRO 29 222 1 Y 1 D THR 30 ? D THR 30 223 1 Y 1 D ASP 31 ? D ASP 31 224 1 Y 1 D GLU 32 ? D GLU 32 225 1 Y 1 D THR 57 ? D THR 57 226 1 Y 1 D SER 58 ? D SER 58 227 1 Y 1 D SER 59 ? D SER 59 228 1 Y 1 D SER 60 ? D SER 60 229 1 Y 1 D LEU 61 ? D LEU 61 230 1 Y 1 D LEU 62 ? D LEU 62 231 1 Y 1 D ASP 63 ? D ASP 63 232 1 Y 1 D SER 64 ? D SER 64 233 1 Y 1 D THR 65 ? D THR 65 234 1 Y 1 D ASN 66 ? D ASN 66 235 1 Y 1 D THR 67 ? D THR 67 236 1 Y 1 D ASN 68 ? D ASN 68 237 1 Y 1 D PHE 69 ? D PHE 69 238 1 Y 1 D LYS 70 ? D LYS 70 239 1 Y 1 D GLU 71 ? D GLU 71 240 1 Y 1 D GLU 72 ? D GLU 72 241 1 Y 1 D PRO 73 ? D PRO 73 242 1 Y 1 D ALA 74 ? D ALA 74 243 1 Y 1 D ALA 75 ? D ALA 75 244 1 Y 1 D LYS 76 ? D LYS 76 245 1 Y 1 D TYR 77 ? D TYR 77 246 1 Y 1 D GLN 78 ? D GLN 78 247 1 Y 1 D ALA 79 ? D ALA 79 248 1 Y 1 D ILE 80 ? D ILE 80 249 1 Y 1 D PHE 81 ? D PHE 81 250 1 Y 1 D ASP 82 ? D ASP 82 251 1 Y 1 D ASN 83 ? D ASN 83 252 1 Y 1 D THR 84 ? D THR 84 253 1 Y 1 D THR 85 ? D THR 85 254 1 Y 1 D SER 86 ? D SER 86 255 1 Y 1 D LEU 87 ? D LEU 87 256 1 Y 1 D THR 88 ? D THR 88 257 1 Y 1 E HIS 1 ? E HIS 1 258 1 Y 1 E MET 2 ? E MET 2 259 1 Y 1 E PRO 3 ? E PRO 3 260 1 Y 1 E SER 4 ? E SER 4 261 1 Y 1 E LEU 5 ? E LEU 5 262 1 Y 1 E HIS 6 ? E HIS 6 263 1 Y 1 E ASN 7 ? E ASN 7 264 1 Y 1 E ILE 8 ? E ILE 8 265 1 Y 1 E PRO 9 ? E PRO 9 266 1 Y 1 E VAL 10 ? E VAL 10 267 1 Y 1 E PRO 11 ? E PRO 11 268 1 Y 1 E GLU 12 ? E GLU 12 269 1 Y 1 E THR 13 ? E THR 13 270 1 Y 1 E ASN 14 ? E ASN 14 271 1 Y 1 E TYR 15 ? E TYR 15 272 1 Y 1 E LEU 16 ? E LEU 16 273 1 Y 1 E GLY 17 ? E GLY 17 274 1 Y 1 E ASN 18 ? E ASN 18 275 1 Y 1 E THR 19 ? E THR 19 276 1 Y 1 E PRO 20 ? E PRO 20 277 1 Y 1 E THR 21 ? E THR 21 278 1 Y 1 E MET 22 ? E MET 22 279 1 Y 1 E PRO 23 ? E PRO 23 280 1 Y 1 E PHE 24 ? E PHE 24 281 1 Y 1 E SER 25 ? E SER 25 282 1 Y 1 E SER 26 ? E SER 26 283 1 Y 1 E LEU 27 ? E LEU 27 284 1 Y 1 E PRO 28 ? E PRO 28 285 1 Y 1 E PRO 29 ? E PRO 29 286 1 Y 1 E THR 30 ? E THR 30 287 1 Y 1 E ASP 31 ? E ASP 31 288 1 Y 1 E GLU 32 ? E GLU 32 289 1 Y 1 E THR 57 ? E THR 57 290 1 Y 1 E SER 58 ? E SER 58 291 1 Y 1 E SER 59 ? E SER 59 292 1 Y 1 E SER 60 ? E SER 60 293 1 Y 1 E LEU 61 ? E LEU 61 294 1 Y 1 E LEU 62 ? E LEU 62 295 1 Y 1 E ASP 63 ? E ASP 63 296 1 Y 1 E SER 64 ? E SER 64 297 1 Y 1 E THR 65 ? E THR 65 298 1 Y 1 E ASN 66 ? E ASN 66 299 1 Y 1 E THR 67 ? E THR 67 300 1 Y 1 E ASN 68 ? E ASN 68 301 1 Y 1 E PHE 69 ? E PHE 69 302 1 Y 1 E LYS 70 ? E LYS 70 303 1 Y 1 E GLU 71 ? E GLU 71 304 1 Y 1 E GLU 72 ? E GLU 72 305 1 Y 1 E PRO 73 ? E PRO 73 306 1 Y 1 E ALA 74 ? E ALA 74 307 1 Y 1 E ALA 75 ? E ALA 75 308 1 Y 1 E LYS 76 ? E LYS 76 309 1 Y 1 E TYR 77 ? E TYR 77 310 1 Y 1 E GLN 78 ? E GLN 78 311 1 Y 1 E ALA 79 ? E ALA 79 312 1 Y 1 E ILE 80 ? E ILE 80 313 1 Y 1 E PHE 81 ? E PHE 81 314 1 Y 1 E ASP 82 ? E ASP 82 315 1 Y 1 E ASN 83 ? E ASN 83 316 1 Y 1 E THR 84 ? E THR 84 317 1 Y 1 E THR 85 ? E THR 85 318 1 Y 1 E SER 86 ? E SER 86 319 1 Y 1 E LEU 87 ? E LEU 87 320 1 Y 1 E THR 88 ? E THR 88 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 MET N N N N 186 MET CA C N S 187 MET C C N N 188 MET O O N N 189 MET CB C N N 190 MET CG C N N 191 MET SD S N N 192 MET CE C N N 193 MET OXT O N N 194 MET H H N N 195 MET H2 H N N 196 MET HA H N N 197 MET HB2 H N N 198 MET HB3 H N N 199 MET HG2 H N N 200 MET HG3 H N N 201 MET HE1 H N N 202 MET HE2 H N N 203 MET HE3 H N N 204 MET HXT H N N 205 PHE N N N N 206 PHE CA C N S 207 PHE C C N N 208 PHE O O N N 209 PHE CB C N N 210 PHE CG C Y N 211 PHE CD1 C Y N 212 PHE CD2 C Y N 213 PHE CE1 C Y N 214 PHE CE2 C Y N 215 PHE CZ C Y N 216 PHE OXT O N N 217 PHE H H N N 218 PHE H2 H N N 219 PHE HA H N N 220 PHE HB2 H N N 221 PHE HB3 H N N 222 PHE HD1 H N N 223 PHE HD2 H N N 224 PHE HE1 H N N 225 PHE HE2 H N N 226 PHE HZ H N N 227 PHE HXT H N N 228 PRO N N N N 229 PRO CA C N S 230 PRO C C N N 231 PRO O O N N 232 PRO CB C N N 233 PRO CG C N N 234 PRO CD C N N 235 PRO OXT O N N 236 PRO H H N N 237 PRO HA H N N 238 PRO HB2 H N N 239 PRO HB3 H N N 240 PRO HG2 H N N 241 PRO HG3 H N N 242 PRO HD2 H N N 243 PRO HD3 H N N 244 PRO HXT H N N 245 SER N N N N 246 SER CA C N S 247 SER C C N N 248 SER O O N N 249 SER CB C N N 250 SER OG O N N 251 SER OXT O N N 252 SER H H N N 253 SER H2 H N N 254 SER HA H N N 255 SER HB2 H N N 256 SER HB3 H N N 257 SER HG H N N 258 SER HXT H N N 259 THR N N N N 260 THR CA C N S 261 THR C C N N 262 THR O O N N 263 THR CB C N R 264 THR OG1 O N N 265 THR CG2 C N N 266 THR OXT O N N 267 THR H H N N 268 THR H2 H N N 269 THR HA H N N 270 THR HB H N N 271 THR HG1 H N N 272 THR HG21 H N N 273 THR HG22 H N N 274 THR HG23 H N N 275 THR HXT H N N 276 TYR N N N N 277 TYR CA C N S 278 TYR C C N N 279 TYR O O N N 280 TYR CB C N N 281 TYR CG C Y N 282 TYR CD1 C Y N 283 TYR CD2 C Y N 284 TYR CE1 C Y N 285 TYR CE2 C Y N 286 TYR CZ C Y N 287 TYR OH O N N 288 TYR OXT O N N 289 TYR H H N N 290 TYR H2 H N N 291 TYR HA H N N 292 TYR HB2 H N N 293 TYR HB3 H N N 294 TYR HD1 H N N 295 TYR HD2 H N N 296 TYR HE1 H N N 297 TYR HE2 H N N 298 TYR HH H N N 299 TYR HXT H N N 300 VAL N N N N 301 VAL CA C N S 302 VAL C C N N 303 VAL O O N N 304 VAL CB C N N 305 VAL CG1 C N N 306 VAL CG2 C N N 307 VAL OXT O N N 308 VAL H H N N 309 VAL H2 H N N 310 VAL HA H N N 311 VAL HB H N N 312 VAL HG11 H N N 313 VAL HG12 H N N 314 VAL HG13 H N N 315 VAL HG21 H N N 316 VAL HG22 H N N 317 VAL HG23 H N N 318 VAL HXT H N N 319 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 MET N CA sing N N 177 MET N H sing N N 178 MET N H2 sing N N 179 MET CA C sing N N 180 MET CA CB sing N N 181 MET CA HA sing N N 182 MET C O doub N N 183 MET C OXT sing N N 184 MET CB CG sing N N 185 MET CB HB2 sing N N 186 MET CB HB3 sing N N 187 MET CG SD sing N N 188 MET CG HG2 sing N N 189 MET CG HG3 sing N N 190 MET SD CE sing N N 191 MET CE HE1 sing N N 192 MET CE HE2 sing N N 193 MET CE HE3 sing N N 194 MET OXT HXT sing N N 195 PHE N CA sing N N 196 PHE N H sing N N 197 PHE N H2 sing N N 198 PHE CA C sing N N 199 PHE CA CB sing N N 200 PHE CA HA sing N N 201 PHE C O doub N N 202 PHE C OXT sing N N 203 PHE CB CG sing N N 204 PHE CB HB2 sing N N 205 PHE CB HB3 sing N N 206 PHE CG CD1 doub Y N 207 PHE CG CD2 sing Y N 208 PHE CD1 CE1 sing Y N 209 PHE CD1 HD1 sing N N 210 PHE CD2 CE2 doub Y N 211 PHE CD2 HD2 sing N N 212 PHE CE1 CZ doub Y N 213 PHE CE1 HE1 sing N N 214 PHE CE2 CZ sing Y N 215 PHE CE2 HE2 sing N N 216 PHE CZ HZ sing N N 217 PHE OXT HXT sing N N 218 PRO N CA sing N N 219 PRO N CD sing N N 220 PRO N H sing N N 221 PRO CA C sing N N 222 PRO CA CB sing N N 223 PRO CA HA sing N N 224 PRO C O doub N N 225 PRO C OXT sing N N 226 PRO CB CG sing N N 227 PRO CB HB2 sing N N 228 PRO CB HB3 sing N N 229 PRO CG CD sing N N 230 PRO CG HG2 sing N N 231 PRO CG HG3 sing N N 232 PRO CD HD2 sing N N 233 PRO CD HD3 sing N N 234 PRO OXT HXT sing N N 235 SER N CA sing N N 236 SER N H sing N N 237 SER N H2 sing N N 238 SER CA C sing N N 239 SER CA CB sing N N 240 SER CA HA sing N N 241 SER C O doub N N 242 SER C OXT sing N N 243 SER CB OG sing N N 244 SER CB HB2 sing N N 245 SER CB HB3 sing N N 246 SER OG HG sing N N 247 SER OXT HXT sing N N 248 THR N CA sing N N 249 THR N H sing N N 250 THR N H2 sing N N 251 THR CA C sing N N 252 THR CA CB sing N N 253 THR CA HA sing N N 254 THR C O doub N N 255 THR C OXT sing N N 256 THR CB OG1 sing N N 257 THR CB CG2 sing N N 258 THR CB HB sing N N 259 THR OG1 HG1 sing N N 260 THR CG2 HG21 sing N N 261 THR CG2 HG22 sing N N 262 THR CG2 HG23 sing N N 263 THR OXT HXT sing N N 264 TYR N CA sing N N 265 TYR N H sing N N 266 TYR N H2 sing N N 267 TYR CA C sing N N 268 TYR CA CB sing N N 269 TYR CA HA sing N N 270 TYR C O doub N N 271 TYR C OXT sing N N 272 TYR CB CG sing N N 273 TYR CB HB2 sing N N 274 TYR CB HB3 sing N N 275 TYR CG CD1 doub Y N 276 TYR CG CD2 sing Y N 277 TYR CD1 CE1 sing Y N 278 TYR CD1 HD1 sing N N 279 TYR CD2 CE2 doub Y N 280 TYR CD2 HD2 sing N N 281 TYR CE1 CZ doub Y N 282 TYR CE1 HE1 sing N N 283 TYR CE2 CZ sing Y N 284 TYR CE2 HE2 sing N N 285 TYR CZ OH sing N N 286 TYR OH HH sing N N 287 TYR OXT HXT sing N N 288 VAL N CA sing N N 289 VAL N H sing N N 290 VAL N H2 sing N N 291 VAL CA C sing N N 292 VAL CA CB sing N N 293 VAL CA HA sing N N 294 VAL C O doub N N 295 VAL C OXT sing N N 296 VAL CB CG1 sing N N 297 VAL CB CG2 sing N N 298 VAL CB HB sing N N 299 VAL CG1 HG11 sing N N 300 VAL CG1 HG12 sing N N 301 VAL CG1 HG13 sing N N 302 VAL CG2 HG21 sing N N 303 VAL CG2 HG22 sing N N 304 VAL CG2 HG23 sing N N 305 VAL OXT HXT sing N N 306 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-17 _em_admin.deposition_site PDBE _em_admin.entry_id 9HR6 _em_admin.last_update 2025-09-17 _em_admin.map_release_date 2025-09-17 _em_admin.title 'cryoEM structure of amyloid fibrils formed by human RIPK1' # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 50 _em_buffer_component.concentration_units mM _em_buffer_component.formula ? _em_buffer_component.id 1 _em_buffer_component.name TrisHCl # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pET11A _em_entity_assembly_recombinant.strain 'BL21(DE3)' # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -7.319 _em_helical_entity.axial_rise_per_subunit 4.667 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 0.88 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 49.3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 2814672 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.6.0 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 3.8.0.7600 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.6.0 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 4.6.0 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.6.0 CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC 4.6.2 'MODEL REFINEMENT' ? 13 ? 1 ? Coot 0.9.2 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX 1.21 # _em_specimen.concentration 0.765 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Spanish Ministry of Science, Innovation, and Universities' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? # _atom_sites.entry_id 9HR6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #