HEADER METAL BINDING PROTEIN 18-DEC-24 9HS8 TITLE CYTOCHROME C PRIME BETA FROM METHYLOCOCCUS CAPSULATUS (BATH) IN TITLE 2 COMPLEX WITH NITRIC OXIDE FROM PROLI NONOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS STR. BATH; SOURCE 3 ORGANISM_TAXID: 243233; SOURCE 4 GENE: CCP, MCA2394; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PUC86; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT SK(+) KEYWDS MCCP, HEME, GAS BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SMYTH,L.J.WILLIAMS,M.A.HOUGH,J.A.R.WORRALL,R.L.OWEN REVDAT 2 10-SEP-25 9HS8 1 JRNL REVDAT 1 03-SEP-25 9HS8 0 JRNL AUTH P.SMYTH,S.JAHO,L.J.WILLIAMS,G.KARRAS,A.FITZPATRICK, JRNL AUTH 2 A.J.THOMPSON,S.BATTAH,D.AXFORD,S.HORRELL,M.LUCIC,K.ISHIHARA, JRNL AUTH 3 M.KATAOKA,H.MATSUURA,K.SHIMBA,K.TONO,T.TOSHA,H.SUGIMOTO, JRNL AUTH 4 S.OWADA,M.A.HOUGH,J.A.R.WORRALL,R.L.OWEN JRNL TITL TIME-RESOLVED SERIAL SYNCHROTRON AND SERIAL FEMTOSECOND JRNL TITL 2 CRYSTALLOGRAPHY OF HEME PROTEINS USING PHOTOCAGED NITRIC JRNL TITL 3 OXIDE. JRNL REF IUCRJ V. 12 582 2025 JRNL REFN ESSN 2052-2525 JRNL PMID 40843530 JRNL DOI 10.1107/S2052252525006645 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.869 REMARK 3 FREE R VALUE TEST SET COUNT : 1729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2446 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3340 ; 2.553 ; 1.886 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 7.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 6.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;13.068 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2000 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 899 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1556 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.245 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1161 ; 3.682 ; 3.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1468 ; 5.039 ; 5.586 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 5.663 ; 3.535 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 8.392 ; 6.236 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9HS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1292144028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : CRYOCOOLED DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS, XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 175.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 137.3 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CUBES OF APPROX 30 UM GREW WITHIN 24 H. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FINAL CONCENTRATIONS: 20 MG/ML REMARK 280 PROTEIN, 50 MM HEPES PH 7.5, 34 % (V/V) POLYETHYLENE GLYCOL 550, REMARK 280 500 MM MES PH 6.5, 5 MM ZNSO4., BATCH MODE, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.72050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.72050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.72050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.72050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.72050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.72050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.72050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.72050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.72050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.72050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.72050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.72050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.72050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.72050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.72050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.72050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.72050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.72050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 ASN B -18 REMARK 465 LYS B -17 REMARK 465 PRO B -16 REMARK 465 SER B -15 REMARK 465 PHE B -14 REMARK 465 LEU B -13 REMARK 465 LEU B -12 REMARK 465 VAL B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 VAL B -7 REMARK 465 VAL B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 VAL B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 MET A -19 REMARK 465 ASN A -18 REMARK 465 LYS A -17 REMARK 465 PRO A -16 REMARK 465 SER A -15 REMARK 465 PHE A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 VAL A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 VAL A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 VAL A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 3 CG2 REMARK 470 LYS B 127 NZ REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 ASN A 30 ND2 REMARK 470 LYS A 77 CE NZ REMARK 470 LYS A 89 CD CE NZ REMARK 470 LYS A 127 NZ REMARK 470 GLN A 130 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 29 O HOH A 301 1.98 REMARK 500 OE1 GLN B 46 O HOH B 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 29 CG - CD - OE1 ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU A 29 CG - CD - OE2 ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 87 103.85 -161.82 REMARK 500 GLU B 104 17.50 55.79 REMARK 500 GLU A 104 24.40 48.04 REMARK 500 LYS A 109 61.43 -101.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 49 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 68 OE2 REMARK 620 2 HIS B 71 ND1 104.9 REMARK 620 3 GLU A 68 OE1 116.2 103.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 123 NE2 REMARK 620 2 HEC B 201 NA 87.0 REMARK 620 3 HEC B 201 NB 88.1 86.2 REMARK 620 4 HEC B 201 NC 89.7 176.7 93.7 REMARK 620 5 HEC B 201 ND 91.9 93.3 179.5 86.8 REMARK 620 6 NO B 204 N 170.1 83.6 88.3 99.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 HIS A 71 NE2 0.0 REMARK 620 3 HOH A 345 O 97.2 97.2 REMARK 620 4 HOH A 345 O 89.8 89.8 64.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 203 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 123 NE2 REMARK 620 2 HEC A 203 NA 89.0 REMARK 620 3 HEC A 203 NB 90.1 86.6 REMARK 620 4 HEC A 203 NC 91.0 179.3 92.7 REMARK 620 5 HEC A 203 ND 90.6 92.2 178.6 88.6 REMARK 620 6 NO A 204 N 177.2 93.2 91.7 86.7 87.7 REMARK 620 N 1 2 3 4 5 DBREF 9HS8 B -19 138 UNP G1UBD5 G1UBD5_METCA 1 158 DBREF 9HS8 A -19 138 UNP G1UBD5 G1UBD5_METCA 1 158 SEQRES 1 B 158 MET ASN LYS PRO SER PHE LEU LEU VAL GLY LEU LEU VAL SEQRES 2 B 158 VAL SER GLY VAL LEU GLY ALA ALA GLU THR LYS VAL LYS SEQRES 3 B 158 TYR PRO ASP GLY PHE ARG SER TRP TYR HIS VAL LYS SER SEQRES 4 B 158 MET VAL ILE GLN PRO GLY HIS PRO LEU GLU ASN PRO PHE SEQRES 5 B 158 GLY GLY ILE HIS HIS VAL TYR ALA ASN ALA GLU ALA ILE SEQRES 6 B 158 GLN GLY LEU ARG GLY GLY ASN TYR PRO ASP GLY ALA VAL SEQRES 7 B 158 LEU VAL PHE ASP LEU PHE ASP TYR GLN GLU ASP ASN HIS SEQRES 8 B 158 ALA LEU VAL GLU GLY LYS ARG LYS LEU ILE GLY VAL MET SEQRES 9 B 158 GLU ARG ASP ALA LYS ARG PHE SER ALA THR GLY GLY TRP SEQRES 10 B 158 GLY TYR GLU GLY PHE GLY GLU GLY LYS PRO ASP LYS ARG SEQRES 11 B 158 LEU VAL THR ASP GLY GLY GLN GLY CYS PHE GLY CYS HIS SEQRES 12 B 158 ALA ALA GLN LYS GLU SER GLN TYR VAL PHE SER ARG LEU SEQRES 13 B 158 ARG ASP SEQRES 1 A 158 MET ASN LYS PRO SER PHE LEU LEU VAL GLY LEU LEU VAL SEQRES 2 A 158 VAL SER GLY VAL LEU GLY ALA ALA GLU THR LYS VAL LYS SEQRES 3 A 158 TYR PRO ASP GLY PHE ARG SER TRP TYR HIS VAL LYS SER SEQRES 4 A 158 MET VAL ILE GLN PRO GLY HIS PRO LEU GLU ASN PRO PHE SEQRES 5 A 158 GLY GLY ILE HIS HIS VAL TYR ALA ASN ALA GLU ALA ILE SEQRES 6 A 158 GLN GLY LEU ARG GLY GLY ASN TYR PRO ASP GLY ALA VAL SEQRES 7 A 158 LEU VAL PHE ASP LEU PHE ASP TYR GLN GLU ASP ASN HIS SEQRES 8 A 158 ALA LEU VAL GLU GLY LYS ARG LYS LEU ILE GLY VAL MET SEQRES 9 A 158 GLU ARG ASP ALA LYS ARG PHE SER ALA THR GLY GLY TRP SEQRES 10 A 158 GLY TYR GLU GLY PHE GLY GLU GLY LYS PRO ASP LYS ARG SEQRES 11 A 158 LEU VAL THR ASP GLY GLY GLN GLY CYS PHE GLY CYS HIS SEQRES 12 A 158 ALA ALA GLN LYS GLU SER GLN TYR VAL PHE SER ARG LEU SEQRES 13 A 158 ARG ASP HET HEC B 201 43 HET GOL B 202 6 HET ZN B 203 1 HET NO B 204 2 HET GOL A 201 6 HET ZN A 202 1 HET HEC A 203 43 HET NO A 204 2 HETNAM HEC HEME C HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM NO NITRIC OXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NO NITROGEN MONOXIDE FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 NO 2(N O) FORMUL 11 HOH *95(H2 O) HELIX 1 AA1 GLY B 10 TRP B 14 5 5 HELIX 2 AA2 LEU B 28 GLY B 33 1 6 HELIX 3 AA3 ASN B 41 ARG B 49 1 9 HELIX 4 AA4 PHE B 91 GLY B 95 5 5 HELIX 5 AA5 GLY B 116 ALA B 124 1 9 HELIX 6 AA6 ALA B 125 GLN B 130 5 6 HELIX 7 AA7 GLY A 10 TRP A 14 5 5 HELIX 8 AA8 LEU A 28 GLY A 33 1 6 HELIX 9 AA9 ASN A 41 GLY A 50 1 10 HELIX 10 AB1 PHE A 91 GLY A 95 5 5 HELIX 11 AB2 GLY A 116 ALA A 124 1 9 HELIX 12 AB3 ALA A 125 GLN A 130 5 6 SHEET 1 AA1 7 TRP B 97 GLY B 103 0 SHEET 2 AA1 7 ALA B 72 ARG B 86 -1 N GLU B 85 O GLY B 98 SHEET 3 AA1 7 VAL B 58 ASP B 69 -1 N PHE B 61 O GLY B 82 SHEET 4 AA1 7 GLY B 34 ALA B 40 -1 N HIS B 37 O ASP B 62 SHEET 5 AA1 7 TYR B 15 ILE B 22 -1 N LYS B 18 O VAL B 38 SHEET 6 AA1 7 ALA A 72 ARG A 86 -1 O LEU A 73 N VAL B 21 SHEET 7 AA1 7 TRP A 97 GLY A 103 -1 O GLY A 98 N GLU A 85 SHEET 1 AA2 7 TRP B 97 GLY B 103 0 SHEET 2 AA2 7 ALA B 72 ARG B 86 -1 N GLU B 85 O GLY B 98 SHEET 3 AA2 7 TYR A 15 ILE A 22 -1 O VAL A 21 N LEU B 73 SHEET 4 AA2 7 GLY A 34 ALA A 40 -1 O VAL A 38 N VAL A 17 SHEET 5 AA2 7 VAL A 58 GLU A 68 -1 O ASP A 62 N HIS A 37 SHEET 6 AA2 7 ALA A 72 ARG A 86 -1 O GLY A 76 N ASP A 65 SHEET 7 AA2 7 TRP A 97 GLY A 103 -1 O GLY A 98 N GLU A 85 LINK SG CYS B 119 CAB HEC B 201 1555 1555 1.74 LINK SG CYS B 122 CAC HEC B 201 1555 1555 1.84 LINK SG CYS A 119 CAB HEC A 203 1555 1555 1.73 LINK SG CYS A 122 CAC HEC A 203 1555 1555 1.86 LINK OE2 GLU B 68 ZN ZN B 203 1555 1555 1.77 LINK ND1 HIS B 71 ZN ZN B 203 1555 1555 2.59 LINK NE2 HIS B 123 FE HEC B 201 1555 1555 2.00 LINK FE HEC B 201 N NO B 204 1555 1555 1.90 LINK ZN ZN B 203 OE1 GLU A 68 9555 1555 2.14 LINK NE2 HIS A 71 ZN ZN A 202 1555 1555 2.08 LINK NE2 HIS A 71 ZN ZN A 202 1555 5555 2.08 LINK NE2 HIS A 123 FE HEC A 203 1555 1555 2.02 LINK ZN ZN A 202 O HOH A 345 1555 1555 2.46 LINK ZN ZN A 202 O HOH A 345 1555 5555 2.46 LINK FE HEC A 203 N NO A 204 1555 1555 1.92 CISPEP 1 ASN B 30 PRO B 31 0 -3.08 CISPEP 2 ASN A 30 PRO A 31 0 9.68 CRYST1 107.441 107.441 107.441 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009307 0.00000 CONECT 578 2305 CONECT 601 2305 CONECT 970 2278 CONECT 991 2286 CONECT 1001 2256 CONECT 1744 2314 CONECT 2098 2337 CONECT 2119 2345 CONECT 2129 2315 CONECT 2256 1001 2261 2272 2280 CONECT 2256 2288 2306 CONECT 2257 2262 2292 CONECT 2258 2265 2273 CONECT 2259 2276 2281 CONECT 2260 2284 2289 CONECT 2261 2256 2262 2265 CONECT 2262 2257 2261 2263 CONECT 2263 2262 2264 2267 CONECT 2264 2263 2265 2266 CONECT 2265 2258 2261 2264 CONECT 2266 2264 CONECT 2267 2263 2268 CONECT 2268 2267 2269 CONECT 2269 2268 2270 2271 CONECT 2270 2269 CONECT 2271 2269 CONECT 2272 2256 2273 2276 CONECT 2273 2258 2272 2274 CONECT 2274 2273 2275 2277 CONECT 2275 2274 2276 2278 CONECT 2276 2259 2272 2275 CONECT 2277 2274 CONECT 2278 970 2275 2279 CONECT 2279 2278 CONECT 2280 2256 2281 2284 CONECT 2281 2259 2280 2282 CONECT 2282 2281 2283 2285 CONECT 2283 2282 2284 2286 CONECT 2284 2260 2280 2283 CONECT 2285 2282 CONECT 2286 991 2283 2287 CONECT 2287 2286 CONECT 2288 2256 2289 2292 CONECT 2289 2260 2288 2290 CONECT 2290 2289 2291 2293 CONECT 2291 2290 2292 2294 CONECT 2292 2257 2288 2291 CONECT 2293 2290 CONECT 2294 2291 2295 CONECT 2295 2294 2296 CONECT 2296 2295 2297 2298 CONECT 2297 2296 CONECT 2298 2296 CONECT 2299 2300 2301 CONECT 2300 2299 CONECT 2301 2299 2302 2303 CONECT 2302 2301 CONECT 2303 2301 2304 CONECT 2304 2303 CONECT 2305 578 601 CONECT 2306 2256 2307 CONECT 2307 2306 CONECT 2308 2309 2310 CONECT 2309 2308 CONECT 2310 2308 2311 2312 CONECT 2311 2310 CONECT 2312 2310 2313 CONECT 2313 2312 CONECT 2314 1744 2450 CONECT 2315 2129 2320 2331 2339 CONECT 2315 2347 2358 CONECT 2316 2321 2351 CONECT 2317 2324 2332 CONECT 2318 2335 2340 CONECT 2319 2343 2348 CONECT 2320 2315 2321 2324 CONECT 2321 2316 2320 2322 CONECT 2322 2321 2323 2326 CONECT 2323 2322 2324 2325 CONECT 2324 2317 2320 2323 CONECT 2325 2323 CONECT 2326 2322 2327 CONECT 2327 2326 2328 CONECT 2328 2327 2329 2330 CONECT 2329 2328 CONECT 2330 2328 CONECT 2331 2315 2332 2335 CONECT 2332 2317 2331 2333 CONECT 2333 2332 2334 2336 CONECT 2334 2333 2335 2337 CONECT 2335 2318 2331 2334 CONECT 2336 2333 CONECT 2337 2098 2334 2338 CONECT 2338 2337 CONECT 2339 2315 2340 2343 CONECT 2340 2318 2339 2341 CONECT 2341 2340 2342 2344 CONECT 2342 2341 2343 2345 CONECT 2343 2319 2339 2342 CONECT 2344 2341 CONECT 2345 2119 2342 2346 CONECT 2346 2345 CONECT 2347 2315 2348 2351 CONECT 2348 2319 2347 2349 CONECT 2349 2348 2350 2352 CONECT 2350 2349 2351 2353 CONECT 2351 2316 2347 2350 CONECT 2352 2349 CONECT 2353 2350 2354 CONECT 2354 2353 2355 CONECT 2355 2354 2356 2357 CONECT 2356 2355 CONECT 2357 2355 CONECT 2358 2315 2359 CONECT 2359 2358 CONECT 2450 2314 MASTER 451 0 8 12 14 0 0 6 2338 2 116 26 END