HEADER PROTEIN BINDING 19-DEC-24 9HTD TITLE PEPTIDE-SUBSTRATE-BINDING (PSB) DOMAIN OF HUMAN TYPE II COLLAGEN TITLE 2 PROLYL 4-HYDROXYLASE COMPLEXED WITH PRO-HYP-GLY-PRO-ALA-GLY-PRO-HYP- TITLE 3 GLY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4-PH ALPHA-2,PROCOLLAGEN-PROLINE,2-OXOGLUTARATE-4- COMPND 5 DIOXYGENASE SUBUNIT ALPHA-2; COMPND 6 EC: 1.14.11.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL HIS-TAG. CONSTRUCT INCLUDING RESIDUES COMPND 9 MET142-GLU236.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GLY-PRO-ALA-GLY-PRO-HYP-GLY; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: THE TWO FIRST N-TERMINAL RESIDUES OF THE PEPTIDE ARE COMPND 15 NOT MODELLED AND NOT SEEN IN THE ELECTRON DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P4HA2, UNQ290/PRO330; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS COLLAGEN, TETRATRICOPEPTIDE, EXTRACELLULAR MATRIX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.SULU,M.M.RAHMAN,R.K.WIERENGA,M.K.KOSKI REVDAT 1 24-SEP-25 9HTD 0 JRNL AUTH M.M.RAHMAN,R.SULU,B.ADEDIRAN,H.TU,A.M.SALO,S.MURTHY, JRNL AUTH 2 J.MYLLYHARJU,R.K.WIERENGA,M.K.KOSKI JRNL TITL BINDING DIFFERENCES OF THE PEPTIDE-SUBSTRATE-BINDING DOMAIN JRNL TITL 2 OF COLLAGEN PROLYL 4-HYDROXYLASES I AND II FOR PROLINE- AND JRNL TITL 3 HYDROXYPROLINE-RICH PEPTIDES. JRNL REF PROTEINS V. 93 1732 2025 JRNL REFN ESSN 1097-0134 JRNL PMID 40386874 JRNL DOI 10.1002/PROT.26839 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.77) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 12783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.374 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19600 REMARK 3 B22 (A**2) : -0.19600 REMARK 3 B33 (A**2) : 0.63700 REMARK 3 B12 (A**2) : -0.09800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 838 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 760 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1130 ; 1.905 ; 1.844 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1749 ; 0.741 ; 1.768 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 99 ; 5.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ; 8.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 133 ;12.335 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 119 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1000 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 190 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 177 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 21 ; 0.107 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 415 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 414 ; 4.246 ; 3.566 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 413 ; 4.201 ; 3.560 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 507 ; 5.780 ; 6.293 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 508 ; 5.776 ; 6.296 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 424 ; 6.025 ; 4.133 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 420 ; 5.953 ; 4.094 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 623 ; 8.940 ; 7.317 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 618 ; 8.894 ; 7.245 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9HTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1292143941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 49.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.07500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 10% DIOXANE, 100 REMARK 280 MM MES, 2 MM PRO-HYP-GLY-PRO-ALA-GLY-PRO-HYP-GLY., PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.88533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.94267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.94267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.88533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 MET A 144 REMARK 465 PRO C 1 REMARK 465 HYP C 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 160 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 66.08 -155.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 155 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EVL RELATED DB: PDB REMARK 900 APO STRUCTURE OF THE SAME PSB-II CONSTRUCT. REMARK 900 RELATED ID: 6EVP RELATED DB: PDB REMARK 900 SAME PSB-II CONSTRUCT CO-CRYSTALLIZED WITH PPGPEGPPG. REMARK 900 RELATED ID: 6EVN RELATED DB: PDB REMARK 900 SAME PSB-II CONSTRUCT CO-CRYSTALLIZED WITH PPGPAGPPG. REMARK 900 RELATED ID: 6EVO RELATED DB: PDB REMARK 900 SAME PSB-II CONSTRUCT CO-CRYSTALLIZED WITH PPGPRGPPG. REMARK 900 RELATED ID: 6EVM RELATED DB: PDB REMARK 900 SAME PSB-II CONSTRUCT CO-CRYSTALLIZED WITH PPPPPPPPP. DBREF 9HTD A 144 238 UNP O15460 P4HA2_HUMAN 163 257 DBREF 9HTD C 1 9 PDB 9HTD 9HTD 1 9 SEQADV 9HTD MET A 137 UNP O15460 INITIATING METHIONINE SEQADV 9HTD HIS A 138 UNP O15460 EXPRESSION TAG SEQADV 9HTD HIS A 139 UNP O15460 EXPRESSION TAG SEQADV 9HTD HIS A 140 UNP O15460 EXPRESSION TAG SEQADV 9HTD HIS A 141 UNP O15460 EXPRESSION TAG SEQADV 9HTD HIS A 142 UNP O15460 EXPRESSION TAG SEQADV 9HTD HIS A 143 UNP O15460 EXPRESSION TAG SEQRES 1 A 102 MET HIS HIS HIS HIS HIS HIS MET LEU SER VAL ASP ASP SEQRES 2 A 102 CYS PHE GLY MET GLY ARG SER ALA TYR ASN GLU GLY ASP SEQRES 3 A 102 TYR TYR HIS THR VAL LEU TRP MET GLU GLN VAL LEU LYS SEQRES 4 A 102 GLN LEU ASP ALA GLY GLU GLU ALA THR THR THR LYS SER SEQRES 5 A 102 GLN VAL LEU ASP TYR LEU SER TYR ALA VAL PHE GLN LEU SEQRES 6 A 102 GLY ASP LEU HIS ARG ALA LEU GLU LEU THR ARG ARG LEU SEQRES 7 A 102 LEU SER LEU ASP PRO SER HIS GLU ARG ALA GLY GLY ASN SEQRES 8 A 102 LEU ARG TYR PHE GLU GLN LEU LEU GLU GLU GLU SEQRES 1 C 9 PRO HYP GLY PRO ALA GLY PRO HYP GLY HET HYP C 8 15 HET GLY A 301 10 HET GLY A 302 10 HET GLY A 303 10 HET GLY A 304 10 HET SO4 A 305 5 HETNAM HYP 4-HYDROXYPROLINE HETNAM GLY GLYCINE HETNAM SO4 SULFATE ION HETSYN HYP HYDROXYPROLINE FORMUL 2 HYP C5 H9 N O3 FORMUL 3 GLY 4(C2 H5 N O2) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *55(H2 O) HELIX 1 AA1 SER A 146 GLU A 160 1 15 HELIX 2 AA2 ASP A 162 ALA A 179 1 18 HELIX 3 AA3 THR A 186 LEU A 201 1 16 HELIX 4 AA4 ASP A 203 ASP A 218 1 16 HELIX 5 AA5 HIS A 221 GLU A 238 1 18 LINK C PRO C 7 N HYP C 8 1555 1555 1.36 LINK C HYP C 8 N GLY C 9 1555 1555 1.33 CRYST1 56.655 56.655 68.828 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017651 0.010191 0.000000 0.00000 SCALE2 0.000000 0.020381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014529 0.00000 TER 1489 GLU A 238 HETATM 1542 N HYP C 8 19.480 -27.445 9.957 1.00 48.94 N HETATM 1543 CA HYP C 8 19.215 -28.577 10.840 1.00 55.16 C HETATM 1544 C HYP C 8 17.989 -29.380 10.413 1.00 54.98 C HETATM 1545 O HYP C 8 18.038 -30.614 10.320 1.00 59.94 O HETATM 1546 CB HYP C 8 19.030 -27.909 12.223 1.00 53.54 C HETATM 1547 CG HYP C 8 19.809 -26.614 12.118 1.00 50.71 C HETATM 1548 CD HYP C 8 19.463 -26.158 10.699 1.00 47.99 C HETATM 1549 OD1 HYP C 8 21.196 -26.994 12.251 1.00 51.17 O HETATM 1550 HA HYP C 8 20.016 -29.177 10.860 1.00 53.58 H HETATM 1551 HB2 HYP C 8 19.386 -28.474 12.928 1.00 53.22 H HETATM 1552 HB3 HYP C 8 18.091 -27.735 12.400 1.00 53.24 H HETATM 1553 HG HYP C 8 19.540 -25.956 12.798 1.00 50.79 H HETATM 1554 HD22 HYP C 8 18.583 -25.748 10.660 1.00 48.76 H HETATM 1555 HD23 HYP C 8 20.129 -25.543 10.366 1.00 48.62 H HETATM 1556 HD1 HYP C 8 21.718 -26.282 12.194 0.00 50.36 H TER 1565 GLY C 9 HETATM 1566 N GLY A 301 28.914 -11.757 -4.270 1.00 67.98 N HETATM 1567 CA GLY A 301 27.570 -11.622 -3.669 1.00 64.64 C HETATM 1568 C GLY A 301 26.508 -11.674 -4.739 1.00 67.34 C HETATM 1569 O GLY A 301 25.468 -12.314 -4.483 1.00 53.79 O HETATM 1570 OXT GLY A 301 26.740 -11.024 -5.787 1.00 82.52 O HETATM 1571 H1 GLY A 301 29.545 -11.726 -3.622 1.00 66.94 H HETATM 1572 H2 GLY A 301 29.064 -11.083 -4.855 1.00 66.94 H HETATM 1573 H3 GLY A 301 28.983 -12.547 -4.707 1.00 66.94 H HETATM 1574 HA2 GLY A 301 27.425 -12.342 -3.017 1.00 65.50 H HETATM 1575 HA3 GLY A 301 27.514 -10.766 -3.194 1.00 65.91 H HETATM 1576 N GLY A 302 25.112 -31.754 -12.415 1.00 73.86 N HETATM 1577 CA GLY A 302 26.121 -30.778 -11.957 1.00 72.92 C HETATM 1578 C GLY A 302 26.486 -29.775 -13.037 1.00 70.90 C HETATM 1579 O GLY A 302 26.080 -29.983 -14.198 1.00 82.42 O HETATM 1580 OXT GLY A 302 27.194 -28.822 -12.691 1.00 79.23 O HETATM 1581 H1 GLY A 302 24.932 -32.346 -11.755 1.00 73.57 H HETATM 1582 H2 GLY A 302 25.421 -32.203 -13.137 1.00 73.57 H HETATM 1583 H3 GLY A 302 24.348 -31.325 -12.641 1.00 73.57 H HETATM 1584 HA2 GLY A 302 25.768 -30.299 -11.174 1.00 71.98 H HETATM 1585 HA3 GLY A 302 26.931 -31.265 -11.676 1.00 72.34 H HETATM 1586 N GLY A 303 17.381 -13.162 7.529 1.00 60.94 N HETATM 1587 CA GLY A 303 16.035 -13.614 7.937 1.00 66.46 C HETATM 1588 C GLY A 303 15.973 -15.097 8.323 1.00 67.20 C HETATM 1589 O GLY A 303 16.983 -15.819 8.092 1.00 75.37 O HETATM 1590 OXT GLY A 303 14.900 -15.503 8.853 1.00 81.29 O HETATM 1591 H1 GLY A 303 17.530 -12.330 7.857 1.00 62.54 H HETATM 1592 H2 GLY A 303 17.436 -13.127 6.627 1.00 62.35 H HETATM 1593 H3 GLY A 303 18.027 -13.714 7.845 1.00 62.56 H HETATM 1594 HA2 GLY A 303 15.733 -13.067 8.699 1.00 65.09 H HETATM 1595 HA3 GLY A 303 15.432 -13.447 7.196 1.00 64.29 H HETATM 1596 N GLY A 304 7.975 -27.636 -8.520 1.00 56.77 N HETATM 1597 CA GLY A 304 7.531 -27.006 -7.261 1.00 51.90 C HETATM 1598 C GLY A 304 6.082 -26.635 -7.427 1.00 57.86 C HETATM 1599 O GLY A 304 5.293 -27.584 -7.533 1.00 69.85 O HETATM 1600 OXT GLY A 304 5.814 -25.432 -7.579 1.00 63.43 O HETATM 1601 H1 GLY A 304 8.691 -27.190 -8.846 1.00 54.85 H HETATM 1602 H2 GLY A 304 7.334 -27.623 -9.161 1.00 55.10 H HETATM 1603 H3 GLY A 304 8.194 -28.500 -8.369 1.00 54.85 H HETATM 1604 HA2 GLY A 304 7.639 -27.639 -6.513 1.00 54.27 H HETATM 1605 HA3 GLY A 304 8.073 -26.203 -7.078 1.00 54.13 H HETATM 1606 S SO4 A 305 13.266 -11.220 3.104 1.00 76.47 S HETATM 1607 O1 SO4 A 305 14.464 -12.010 3.111 1.00 92.17 O HETATM 1608 O2 SO4 A 305 12.151 -12.018 2.658 1.00 83.83 O HETATM 1609 O3 SO4 A 305 13.000 -10.718 4.437 1.00 72.54 O HETATM 1610 O4 SO4 A 305 13.444 -10.118 2.191 1.00 89.41 O HETATM 1611 O HOH A 401 33.676 -14.899 -2.327 1.00 57.59 O HETATM 1612 O HOH A 402 11.930 -24.836 -10.904 1.00 55.85 O HETATM 1613 O HOH A 403 22.210 -18.338 11.054 1.00 54.77 O HETATM 1614 O HOH A 404 16.597 -12.700 4.229 1.00 36.09 O HETATM 1615 O HOH A 405 8.567 -34.900 2.691 1.00 47.99 O HETATM 1616 O HOH A 406 9.770 -12.628 3.702 1.00 47.35 O HETATM 1617 O HOH A 407 0.271 -19.999 4.447 1.00 57.02 O HETATM 1618 O HOH A 408 27.033 -26.336 -13.266 1.00 51.63 O HETATM 1619 O HOH A 409 14.391 -21.972 8.178 1.00 55.65 O HETATM 1620 O HOH A 410 9.475 -12.864 7.754 1.00 54.93 O HETATM 1621 O HOH A 411 24.528 -24.546 -13.072 1.00 35.64 O HETATM 1622 O HOH A 412 19.554 -38.237 -0.328 1.00 51.26 O HETATM 1623 O HOH A 413 23.337 -11.818 9.514 1.00 30.23 O HETATM 1624 O HOH A 414 34.680 -24.299 5.649 1.00 48.44 O HETATM 1625 O HOH A 415 29.121 -16.846 -7.790 1.00 49.98 O HETATM 1626 O HOH A 416 13.991 -37.086 -6.008 1.00 50.86 O HETATM 1627 O HOH A 417 10.347 -13.830 -9.485 1.00 45.29 O HETATM 1628 O HOH A 418 24.883 -15.908 13.927 1.00 39.77 O HETATM 1629 O HOH A 419 7.866 -28.643 6.547 1.00 43.31 O HETATM 1630 O HOH A 420 25.775 -9.187 10.377 1.00 31.65 O HETATM 1631 O HOH A 421 10.295 -24.996 -9.157 1.00 38.98 O HETATM 1632 O HOH A 422 31.273 -10.570 -3.787 1.00 56.24 O HETATM 1633 O HOH A 423 7.350 -28.772 -10.889 1.00 49.10 O HETATM 1634 O HOH A 424 25.668 -14.628 -6.018 1.00 42.16 O HETATM 1635 O HOH A 425 19.481 -16.300 -6.632 1.00 49.35 O HETATM 1636 O HOH A 426 8.231 -20.043 7.095 1.00 54.05 O HETATM 1637 O HOH A 427 10.010 -32.662 8.125 1.00 59.61 O HETATM 1638 O HOH A 428 29.785 -28.881 -10.090 1.00 45.51 O HETATM 1639 O HOH A 429 23.311 -23.957 3.193 1.00 42.71 O HETATM 1640 O HOH A 430 18.022 -10.711 4.670 1.00 51.82 O HETATM 1641 O HOH A 431 2.758 -17.350 2.734 1.00 46.78 O HETATM 1642 O HOH A 432 18.642 -33.754 5.066 1.00 51.72 O HETATM 1643 O HOH A 433 28.165 -32.834 -4.474 1.00 57.29 O HETATM 1644 O HOH A 434 36.537 -25.875 4.677 1.00 59.99 O HETATM 1645 O HOH A 435 9.245 -10.615 -0.759 1.00 51.73 O HETATM 1646 O HOH A 436 1.490 -16.817 -0.529 1.00 53.75 O HETATM 1647 O HOH A 437 10.398 -34.842 6.320 1.00 43.51 O HETATM 1648 O HOH A 438 17.442 -35.942 -4.753 1.00 38.32 O HETATM 1649 O HOH A 439 13.781 -19.059 -8.333 1.00 45.37 O HETATM 1650 O HOH A 440 25.400 -22.324 2.000 1.00 36.70 O HETATM 1651 O HOH A 441 22.649 -23.730 12.317 1.00 58.10 O HETATM 1652 O HOH A 442 23.334 -36.543 -1.597 1.00 59.07 O HETATM 1653 O HOH A 443 29.288 -26.695 -11.177 1.00 49.45 O HETATM 1654 O HOH A 444 20.544 -20.400 -9.542 1.00 58.13 O HETATM 1655 O HOH A 445 29.785 -24.382 7.438 1.00 48.62 O HETATM 1656 O HOH A 446 28.391 -16.119 12.622 1.00 59.52 O HETATM 1657 O HOH A 447 16.526 -9.388 2.372 1.00 54.98 O HETATM 1658 O HOH A 448 17.311 -27.932 -10.815 1.00 37.58 O HETATM 1659 O HOH A 449 23.025 -14.373 -7.349 1.00 54.90 O HETATM 1660 O HOH A 450 10.182 -22.221 -9.784 1.00 60.98 O HETATM 1661 O HOH A 451 27.790 -14.366 -7.487 1.00 58.28 O HETATM 1662 O HOH C 101 24.152 -28.514 9.672 1.00 56.59 O HETATM 1663 O HOH C 102 27.563 -32.155 3.895 1.00 53.65 O HETATM 1664 O HOH C 103 24.265 -30.826 6.741 1.00 51.90 O HETATM 1665 O HOH C 104 31.575 -26.463 6.123 1.00 58.39 O CONECT 1530 1542 CONECT 1542 1530 1543 1548 CONECT 1543 1542 1544 1546 1550 CONECT 1544 1543 1545 1557 CONECT 1545 1544 CONECT 1546 1543 1547 1551 1552 CONECT 1547 1546 1548 1549 1553 CONECT 1548 1542 1547 1554 1555 CONECT 1549 1547 1556 CONECT 1550 1543 CONECT 1551 1546 CONECT 1552 1546 CONECT 1553 1547 CONECT 1554 1548 CONECT 1555 1548 CONECT 1556 1549 CONECT 1557 1544 CONECT 1606 1607 1608 1609 1610 CONECT 1607 1606 CONECT 1608 1606 CONECT 1609 1606 CONECT 1610 1606 MASTER 331 0 6 5 0 0 0 6 882 2 22 9 END