data_9HTW # _entry.id 9HTW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9HTW pdb_00009htw 10.2210/pdb9htw/pdb WWPDB D_1292143813 ? ? EMDB EMD-52385 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-14 ? 2 'EM metadata' 1 0 2026-01-14 ? 3 FSC 1 0 2026-01-14 ? 4 'Half map' 1 0 2026-01-14 1 5 'Half map' 1 0 2026-01-14 2 6 Image 1 0 2026-01-14 ? 7 Mask 1 0 2026-01-14 1 8 'Primary map' 1 0 2026-01-14 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9HTW _pdbx_database_status.recvd_initial_deposition_date 2024-12-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Minor protein P7 dimer from transcribing particles of bacteriophage phi6' _pdbx_database_related.db_id EMD-52385 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email juha.huiskonen@helsinki.fi _pdbx_contact_author.name_first Juha _pdbx_contact_author.name_last Huiskonen _pdbx_contact_author.name_mi T. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0348-7323 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kumpula, E.-P.' 1 0000-0003-0335-5993 'Huiskonen, J.T.' 2 0000-0002-0348-7323 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Restructuring of bacteriophage phi6 viral particle activates semi-conservative transcription' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ilca, S.L.' 1 ? primary 'Sun, X.' 2 ? primary 'Kumpula, E.-P.' 3 ? primary 'Eskelin, K.' 4 ? primary 'Poranen, M.M.' 5 ? primary 'Huiskonen, J.T.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Nucleocapsid protein' _entity.formula_weight 12017.965 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Procapsid assembly protein,p7' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLYLVPPLDSADKELPALASKAGVTLLEIEFLHELWPHLSGGQIVIAALNANNLAILNRHMSTLLVELPVAVMAVPGASY RSDWNMIAHALPSEDWITLSNKMLKSGLLAN ; _entity_poly.pdbx_seq_one_letter_code_can ;TLYLVPPLDSADKELPALASKAGVTLLEIEFLHELWPHLSGGQIVIAALNANNLAILNRHMSTLLVELPVAVMAVPGASY RSDWNMIAHALPSEDWITLSNKMLKSGLLAN ; _entity_poly.pdbx_strand_id G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 TYR n 1 4 LEU n 1 5 VAL n 1 6 PRO n 1 7 PRO n 1 8 LEU n 1 9 ASP n 1 10 SER n 1 11 ALA n 1 12 ASP n 1 13 LYS n 1 14 GLU n 1 15 LEU n 1 16 PRO n 1 17 ALA n 1 18 LEU n 1 19 ALA n 1 20 SER n 1 21 LYS n 1 22 ALA n 1 23 GLY n 1 24 VAL n 1 25 THR n 1 26 LEU n 1 27 LEU n 1 28 GLU n 1 29 ILE n 1 30 GLU n 1 31 PHE n 1 32 LEU n 1 33 HIS n 1 34 GLU n 1 35 LEU n 1 36 TRP n 1 37 PRO n 1 38 HIS n 1 39 LEU n 1 40 SER n 1 41 GLY n 1 42 GLY n 1 43 GLN n 1 44 ILE n 1 45 VAL n 1 46 ILE n 1 47 ALA n 1 48 ALA n 1 49 LEU n 1 50 ASN n 1 51 ALA n 1 52 ASN n 1 53 ASN n 1 54 LEU n 1 55 ALA n 1 56 ILE n 1 57 LEU n 1 58 ASN n 1 59 ARG n 1 60 HIS n 1 61 MET n 1 62 SER n 1 63 THR n 1 64 LEU n 1 65 LEU n 1 66 VAL n 1 67 GLU n 1 68 LEU n 1 69 PRO n 1 70 VAL n 1 71 ALA n 1 72 VAL n 1 73 MET n 1 74 ALA n 1 75 VAL n 1 76 PRO n 1 77 GLY n 1 78 ALA n 1 79 SER n 1 80 TYR n 1 81 ARG n 1 82 SER n 1 83 ASP n 1 84 TRP n 1 85 ASN n 1 86 MET n 1 87 ILE n 1 88 ALA n 1 89 HIS n 1 90 ALA n 1 91 LEU n 1 92 PRO n 1 93 SER n 1 94 GLU n 1 95 ASP n 1 96 TRP n 1 97 ILE n 1 98 THR n 1 99 LEU n 1 100 SER n 1 101 ASN n 1 102 LYS n 1 103 MET n 1 104 LEU n 1 105 LYS n 1 106 SER n 1 107 GLY n 1 108 LEU n 1 109 LEU n 1 110 ALA n 1 111 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 111 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Cystovirus phi6' _entity_src_nat.pdbx_ncbi_taxonomy_id 10879 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 2 2 THR THR G . n A 1 2 LEU 2 3 3 LEU LEU G . n A 1 3 TYR 3 4 4 TYR TYR G . n A 1 4 LEU 4 5 5 LEU LEU G . n A 1 5 VAL 5 6 6 VAL VAL G . n A 1 6 PRO 6 7 7 PRO PRO G . n A 1 7 PRO 7 8 8 PRO PRO G . n A 1 8 LEU 8 9 9 LEU LEU G . n A 1 9 ASP 9 10 10 ASP ASP G . n A 1 10 SER 10 11 11 SER SER G . n A 1 11 ALA 11 12 12 ALA ALA G . n A 1 12 ASP 12 13 13 ASP ASP G . n A 1 13 LYS 13 14 14 LYS LYS G . n A 1 14 GLU 14 15 15 GLU GLU G . n A 1 15 LEU 15 16 16 LEU LEU G . n A 1 16 PRO 16 17 17 PRO PRO G . n A 1 17 ALA 17 18 18 ALA ALA G . n A 1 18 LEU 18 19 19 LEU LEU G . n A 1 19 ALA 19 20 20 ALA ALA G . n A 1 20 SER 20 21 21 SER SER G . n A 1 21 LYS 21 22 22 LYS LYS G . n A 1 22 ALA 22 23 23 ALA ALA G . n A 1 23 GLY 23 24 24 GLY GLY G . n A 1 24 VAL 24 25 25 VAL VAL G . n A 1 25 THR 25 26 26 THR THR G . n A 1 26 LEU 26 27 27 LEU LEU G . n A 1 27 LEU 27 28 28 LEU LEU G . n A 1 28 GLU 28 29 29 GLU GLU G . n A 1 29 ILE 29 30 30 ILE ILE G . n A 1 30 GLU 30 31 31 GLU GLU G . n A 1 31 PHE 31 32 32 PHE PHE G . n A 1 32 LEU 32 33 33 LEU LEU G . n A 1 33 HIS 33 34 34 HIS HIS G . n A 1 34 GLU 34 35 35 GLU GLU G . n A 1 35 LEU 35 36 36 LEU LEU G . n A 1 36 TRP 36 37 37 TRP TRP G . n A 1 37 PRO 37 38 38 PRO PRO G . n A 1 38 HIS 38 39 39 HIS HIS G . n A 1 39 LEU 39 40 40 LEU LEU G . n A 1 40 SER 40 41 41 SER SER G . n A 1 41 GLY 41 42 42 GLY GLY G . n A 1 42 GLY 42 43 43 GLY GLY G . n A 1 43 GLN 43 44 44 GLN GLN G . n A 1 44 ILE 44 45 45 ILE ILE G . n A 1 45 VAL 45 46 46 VAL VAL G . n A 1 46 ILE 46 47 47 ILE ILE G . n A 1 47 ALA 47 48 48 ALA ALA G . n A 1 48 ALA 48 49 49 ALA ALA G . n A 1 49 LEU 49 50 50 LEU LEU G . n A 1 50 ASN 50 51 51 ASN ASN G . n A 1 51 ALA 51 52 52 ALA ALA G . n A 1 52 ASN 52 53 53 ASN ASN G . n A 1 53 ASN 53 54 54 ASN ASN G . n A 1 54 LEU 54 55 55 LEU LEU G . n A 1 55 ALA 55 56 56 ALA ALA G . n A 1 56 ILE 56 57 57 ILE ILE G . n A 1 57 LEU 57 58 58 LEU LEU G . n A 1 58 ASN 58 59 59 ASN ASN G . n A 1 59 ARG 59 60 60 ARG ARG G . n A 1 60 HIS 60 61 61 HIS HIS G . n A 1 61 MET 61 62 62 MET MET G . n A 1 62 SER 62 63 63 SER SER G . n A 1 63 THR 63 64 64 THR THR G . n A 1 64 LEU 64 65 65 LEU LEU G . n A 1 65 LEU 65 66 66 LEU LEU G . n A 1 66 VAL 66 67 67 VAL VAL G . n A 1 67 GLU 67 68 68 GLU GLU G . n A 1 68 LEU 68 69 69 LEU LEU G . n A 1 69 PRO 69 70 70 PRO PRO G . n A 1 70 VAL 70 71 71 VAL VAL G . n A 1 71 ALA 71 72 72 ALA ALA G . n A 1 72 VAL 72 73 73 VAL VAL G . n A 1 73 MET 73 74 74 MET MET G . n A 1 74 ALA 74 75 75 ALA ALA G . n A 1 75 VAL 75 76 76 VAL VAL G . n A 1 76 PRO 76 77 77 PRO PRO G . n A 1 77 GLY 77 78 78 GLY GLY G . n A 1 78 ALA 78 79 79 ALA ALA G . n A 1 79 SER 79 80 80 SER SER G . n A 1 80 TYR 80 81 81 TYR TYR G . n A 1 81 ARG 81 82 82 ARG ARG G . n A 1 82 SER 82 83 83 SER SER G . n A 1 83 ASP 83 84 84 ASP ASP G . n A 1 84 TRP 84 85 85 TRP TRP G . n A 1 85 ASN 85 86 86 ASN ASN G . n A 1 86 MET 86 87 87 MET MET G . n A 1 87 ILE 87 88 88 ILE ILE G . n A 1 88 ALA 88 89 89 ALA ALA G . n A 1 89 HIS 89 90 90 HIS HIS G . n A 1 90 ALA 90 91 91 ALA ALA G . n A 1 91 LEU 91 92 92 LEU LEU G . n A 1 92 PRO 92 93 93 PRO PRO G . n A 1 93 SER 93 94 94 SER SER G . n A 1 94 GLU 94 95 95 GLU GLU G . n A 1 95 ASP 95 96 96 ASP ASP G . n A 1 96 TRP 96 97 97 TRP TRP G . n A 1 97 ILE 97 98 98 ILE ILE G . n A 1 98 THR 98 99 99 THR THR G . n A 1 99 LEU 99 100 100 LEU LEU G . n A 1 100 SER 100 101 101 SER SER G . n A 1 101 ASN 101 102 102 ASN ASN G . n A 1 102 LYS 102 103 103 LYS LYS G . n A 1 103 MET 103 104 104 MET MET G . n A 1 104 LEU 104 105 105 LEU LEU G . n A 1 105 LYS 105 106 106 LYS LYS G . n A 1 106 SER 106 107 107 SER SER G . n A 1 107 GLY 107 108 108 GLY GLY G . n A 1 108 LEU 108 109 109 LEU LEU G . n A 1 109 LEU 109 110 110 LEU LEU G . n A 1 110 ALA 110 111 111 ALA ALA G . n A 1 111 ASN 111 112 112 ASN ASN G . n B 1 1 THR 1 2 2 THR THR H . n B 1 2 LEU 2 3 3 LEU LEU H . n B 1 3 TYR 3 4 4 TYR TYR H . n B 1 4 LEU 4 5 5 LEU LEU H . n B 1 5 VAL 5 6 6 VAL VAL H . n B 1 6 PRO 6 7 7 PRO PRO H . n B 1 7 PRO 7 8 8 PRO PRO H . n B 1 8 LEU 8 9 9 LEU LEU H . n B 1 9 ASP 9 10 10 ASP ASP H . n B 1 10 SER 10 11 11 SER SER H . n B 1 11 ALA 11 12 12 ALA ALA H . n B 1 12 ASP 12 13 13 ASP ASP H . n B 1 13 LYS 13 14 14 LYS LYS H . n B 1 14 GLU 14 15 15 GLU GLU H . n B 1 15 LEU 15 16 16 LEU LEU H . n B 1 16 PRO 16 17 17 PRO PRO H . n B 1 17 ALA 17 18 18 ALA ALA H . n B 1 18 LEU 18 19 19 LEU LEU H . n B 1 19 ALA 19 20 20 ALA ALA H . n B 1 20 SER 20 21 21 SER SER H . n B 1 21 LYS 21 22 22 LYS LYS H . n B 1 22 ALA 22 23 23 ALA ALA H . n B 1 23 GLY 23 24 24 GLY GLY H . n B 1 24 VAL 24 25 25 VAL VAL H . n B 1 25 THR 25 26 26 THR THR H . n B 1 26 LEU 26 27 27 LEU LEU H . n B 1 27 LEU 27 28 28 LEU LEU H . n B 1 28 GLU 28 29 29 GLU GLU H . n B 1 29 ILE 29 30 30 ILE ILE H . n B 1 30 GLU 30 31 31 GLU GLU H . n B 1 31 PHE 31 32 32 PHE PHE H . n B 1 32 LEU 32 33 33 LEU LEU H . n B 1 33 HIS 33 34 34 HIS HIS H . n B 1 34 GLU 34 35 35 GLU GLU H . n B 1 35 LEU 35 36 36 LEU LEU H . n B 1 36 TRP 36 37 37 TRP TRP H . n B 1 37 PRO 37 38 38 PRO PRO H . n B 1 38 HIS 38 39 39 HIS HIS H . n B 1 39 LEU 39 40 40 LEU LEU H . n B 1 40 SER 40 41 41 SER SER H . n B 1 41 GLY 41 42 42 GLY GLY H . n B 1 42 GLY 42 43 43 GLY GLY H . n B 1 43 GLN 43 44 44 GLN GLN H . n B 1 44 ILE 44 45 45 ILE ILE H . n B 1 45 VAL 45 46 46 VAL VAL H . n B 1 46 ILE 46 47 47 ILE ILE H . n B 1 47 ALA 47 48 48 ALA ALA H . n B 1 48 ALA 48 49 49 ALA ALA H . n B 1 49 LEU 49 50 50 LEU LEU H . n B 1 50 ASN 50 51 51 ASN ASN H . n B 1 51 ALA 51 52 52 ALA ALA H . n B 1 52 ASN 52 53 53 ASN ASN H . n B 1 53 ASN 53 54 54 ASN ASN H . n B 1 54 LEU 54 55 55 LEU LEU H . n B 1 55 ALA 55 56 56 ALA ALA H . n B 1 56 ILE 56 57 57 ILE ILE H . n B 1 57 LEU 57 58 58 LEU LEU H . n B 1 58 ASN 58 59 59 ASN ASN H . n B 1 59 ARG 59 60 60 ARG ARG H . n B 1 60 HIS 60 61 61 HIS HIS H . n B 1 61 MET 61 62 62 MET MET H . n B 1 62 SER 62 63 63 SER SER H . n B 1 63 THR 63 64 64 THR THR H . n B 1 64 LEU 64 65 65 LEU LEU H . n B 1 65 LEU 65 66 66 LEU LEU H . n B 1 66 VAL 66 67 67 VAL VAL H . n B 1 67 GLU 67 68 68 GLU GLU H . n B 1 68 LEU 68 69 69 LEU LEU H . n B 1 69 PRO 69 70 70 PRO PRO H . n B 1 70 VAL 70 71 71 VAL VAL H . n B 1 71 ALA 71 72 72 ALA ALA H . n B 1 72 VAL 72 73 73 VAL VAL H . n B 1 73 MET 73 74 74 MET MET H . n B 1 74 ALA 74 75 75 ALA ALA H . n B 1 75 VAL 75 76 76 VAL VAL H . n B 1 76 PRO 76 77 77 PRO PRO H . n B 1 77 GLY 77 78 78 GLY GLY H . n B 1 78 ALA 78 79 79 ALA ALA H . n B 1 79 SER 79 80 80 SER SER H . n B 1 80 TYR 80 81 81 TYR TYR H . n B 1 81 ARG 81 82 82 ARG ARG H . n B 1 82 SER 82 83 83 SER SER H . n B 1 83 ASP 83 84 84 ASP ASP H . n B 1 84 TRP 84 85 85 TRP TRP H . n B 1 85 ASN 85 86 86 ASN ASN H . n B 1 86 MET 86 87 87 MET MET H . n B 1 87 ILE 87 88 88 ILE ILE H . n B 1 88 ALA 88 89 89 ALA ALA H . n B 1 89 HIS 89 90 90 HIS HIS H . n B 1 90 ALA 90 91 91 ALA ALA H . n B 1 91 LEU 91 92 92 LEU LEU H . n B 1 92 PRO 92 93 93 PRO PRO H . n B 1 93 SER 93 94 94 SER SER H . n B 1 94 GLU 94 95 95 GLU GLU H . n B 1 95 ASP 95 96 96 ASP ASP H . n B 1 96 TRP 96 97 97 TRP TRP H . n B 1 97 ILE 97 98 98 ILE ILE H . n B 1 98 THR 98 99 99 THR THR H . n B 1 99 LEU 99 100 100 LEU LEU H . n B 1 100 SER 100 101 101 SER SER H . n B 1 101 ASN 101 102 102 ASN ASN H . n B 1 102 LYS 102 103 103 LYS LYS H . n B 1 103 MET 103 104 104 MET MET H . n B 1 104 LEU 104 105 105 LEU LEU H . n B 1 105 LYS 105 106 106 LYS LYS H . n B 1 106 SER 106 107 107 SER SER H . n B 1 107 GLY 107 108 108 GLY GLY H . n B 1 108 LEU 108 109 109 LEU LEU H . n B 1 109 LEU 109 110 110 LEU LEU H . n B 1 110 ALA 110 111 111 ALA ALA H . n B 1 111 ASN 111 112 112 ASN ASN H . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9HTW _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9HTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9HTW _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 113.21 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9HTW _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0081 ? 1728 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.0345 ? 2366 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0550 ? 288 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0070 ? 296 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 13.3055 ? 618 ? f_dihedral_angle_d ? ? # _struct.entry_id 9HTW _struct.title 'Minor protein P7 dimer from transcribing particles of bacteriophage phi6' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9HTW _struct_keywords.text ;cystovirus, phi6, semi-conservative transcription, cryo-EM, cryogenic electron microscopy, localized reconstruction, symmetry relaxation, virus, dsRNA virus, bacteriophage ; _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q283U0_9VIRU _struct_ref.pdbx_db_accession Q283U0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLYLVPPLDSADKELPALASKAGVTLLEIEFLHELWPHLSGGQIVIAALNANNLAILNRHMSTLLVELPVAVMAVPGASY RSDWNMIAHALPSEDWITLSNKMLKSGLLAN ; _struct_ref.pdbx_align_begin 2 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9HTW G 1 ? 111 ? Q283U0 2 ? 112 ? 2 112 2 1 9HTW H 1 ? 111 ? Q283U0 2 ? 112 ? 2 112 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 13 ? GLY A 23 ? LYS G 14 GLY G 24 1 ? 11 HELX_P HELX_P2 AA2 PHE A 31 ? GLU A 34 ? PHE G 32 GLU G 35 5 ? 4 HELX_P HELX_P3 AA3 LEU A 35 ? SER A 40 ? LEU G 36 SER G 41 1 ? 6 HELX_P HELX_P4 AA4 ASN A 50 ? HIS A 60 ? ASN G 51 HIS G 61 1 ? 11 HELX_P HELX_P5 AA5 HIS A 60 ? LEU A 65 ? HIS G 61 LEU G 66 1 ? 6 HELX_P HELX_P6 AA6 ARG A 81 ? HIS A 89 ? ARG G 82 HIS G 90 1 ? 9 HELX_P HELX_P7 AA7 TRP A 96 ? ALA A 110 ? TRP G 97 ALA G 111 1 ? 15 HELX_P HELX_P8 AA8 LYS B 13 ? GLY B 23 ? LYS H 14 GLY H 24 1 ? 11 HELX_P HELX_P9 AA9 PHE B 31 ? GLU B 34 ? PHE H 32 GLU H 35 5 ? 4 HELX_P HELX_P10 AB1 LEU B 35 ? SER B 40 ? LEU H 36 SER H 41 1 ? 6 HELX_P HELX_P11 AB2 ASN B 50 ? HIS B 60 ? ASN H 51 HIS H 61 1 ? 11 HELX_P HELX_P12 AB3 HIS B 60 ? LEU B 65 ? HIS H 61 LEU H 66 1 ? 6 HELX_P HELX_P13 AB4 ARG B 81 ? HIS B 89 ? ARG H 82 HIS H 90 1 ? 9 HELX_P HELX_P14 AB5 TRP B 96 ? GLY B 107 ? TRP H 97 GLY H 108 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 25 ? GLU A 28 ? THR G 26 GLU G 29 AA1 2 VAL A 45 ? ALA A 48 ? VAL G 46 ALA G 49 AA1 3 LEU A 2 ? VAL A 5 ? LEU G 3 VAL G 6 AA1 4 VAL A 70 ? MET A 73 ? VAL G 71 MET G 74 AA1 5 SER A 93 ? ASP A 95 ? SER G 94 ASP G 96 AA2 1 LEU B 26 ? GLU B 28 ? LEU H 27 GLU H 29 AA2 2 VAL B 45 ? ALA B 48 ? VAL H 46 ALA H 49 AA2 3 LEU B 2 ? VAL B 5 ? LEU H 3 VAL H 6 AA2 4 VAL B 70 ? MET B 73 ? VAL H 71 MET H 74 AA2 5 SER B 93 ? ASP B 95 ? SER H 94 ASP H 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 25 ? N THR G 26 O ILE A 46 ? O ILE G 47 AA1 2 3 O VAL A 45 ? O VAL G 46 N TYR A 3 ? N TYR G 4 AA1 3 4 N LEU A 4 ? N LEU G 5 O VAL A 70 ? O VAL G 71 AA1 4 5 N ALA A 71 ? N ALA G 72 O GLU A 94 ? O GLU G 95 AA2 1 2 N LEU B 27 ? N LEU H 28 O ALA B 48 ? O ALA H 49 AA2 2 3 O VAL B 45 ? O VAL H 46 N TYR B 3 ? N TYR H 4 AA2 3 4 N LEU B 4 ? N LEU H 5 O VAL B 70 ? O VAL H 71 AA2 4 5 N MET B 73 ? N MET H 74 O GLU B 94 ? O GLU H 95 # _pdbx_entry_details.entry_id 9HTW _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO H 7 ? ? -59.59 170.70 2 1 SER H 11 ? ? -69.12 85.68 3 1 ALA H 91 ? ? 71.31 38.31 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9HTW _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9HTW _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 114297 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Cystovirus phi6' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9HTW _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 2000 _em_imaging.nominal_defocus_max 41000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate SPECIES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped YES _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 9HTW _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9HTW _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9HTW _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-20 _em_admin.deposition_site PDBE _em_admin.entry_id 9HTW _em_admin.last_update 2026-01-14 _em_admin.map_release_date 2026-01-14 _em_admin.title 'Localized reconstruction consensus map of minor protein P7 from transcribing particles of bacteriophage phi6' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 10879 _em_entity_assembly_naturalsource.organism 'Cystovirus phi6' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 42 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX 1.21.2_5419 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? CLASSIFICATION ? 5 1 1 1 ? ? MASKING ? 6 1 1 1 ? ? RECONSTRUCTION ? 7 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? OTHER ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _em_virus_shell.diameter _em_virus_shell.entity_assembly_id _em_virus_shell.id _em_virus_shell.name _em_virus_shell.triangulation ? 1 1 'Outer protein shell' 13 ? 1 2 'Inner protein shell' 1 # _pdbx_audit_support.funding_organization 'Academy of Finland' _pdbx_audit_support.country Finland _pdbx_audit_support.grant_number 331627 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9HTW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #