HEADER LYASE 02-JAN-25 9HVV TITLE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE-DOMAIN OF HUMAN UMPS IN TITLE 2 COMPLEX WITH 6-METHYL UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE 5'-MONOPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UMP SYNTHASE, OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE; COMPND 5 EC: 2.4.2.10,4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UMPS, OK/SW-CL.21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS URIDINE 5'-MONOPHOSPHATE SYNTHASE PYRIMIDINE METABOLISM HOMO SAPIENS, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.L.KIRCK,S.RINDFLEISCH,T.SCHMIDT,K.TITTMANN REVDAT 1 15-JUL-26 9HVV 0 JRNL AUTH L.L.KIRCK,S.RINDFLEISCH,T.SCHMIDT,K.TITTMANN JRNL TITL OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE-DOMAIN OF HUMAN JRNL TITL 2 UMPS IN COMPLEX WITH 6-METHYL UMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 98954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1966 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2329 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2194 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3187 ; 1.975 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5120 ; 1.653 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.749 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;33.146 ;22.768 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;12.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.007 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1185 ; 1.399 ; 1.308 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1184 ; 1.344 ; 1.305 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1518 ; 1.492 ; 1.966 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1519 ; 1.505 ; 1.968 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 2.578 ; 1.643 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1139 ; 2.522 ; 1.624 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1662 ; 3.131 ; 2.320 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2723 ; 3.039 ;17.785 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2650 ; 2.835 ;16.992 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4522 ; 2.928 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9HVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292144336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 42.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL PH 7.8, 1.8 - 2.0 M REMARK 280 AMMONIUM SULFATE, 10 MM GLUTATHION, 5% (V/V) GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.01350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.01350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.68750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.34350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.68750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.34350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.01350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.68750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.34350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.01350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.68750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.34350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.02700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 758 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU A 262 O HOH A 683 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 480 C VAL A 480 O 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 477 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 477 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 306 74.75 70.39 REMARK 500 ALA A 316 33.11 -160.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 903 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 905 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 6.72 ANGSTROMS DBREF 9HVV A 224 480 UNP P11172 UMPS_HUMAN 224 480 SEQADV 9HVV MET A 223 UNP P11172 INITIATING METHIONINE SEQRES 1 A 258 MET GLU LEU SER PHE GLY ALA ARG ALA GLU LEU PRO ARG SEQRES 2 A 258 ILE HIS PRO VAL ALA SER LYS LEU LEU ARG LEU MET GLN SEQRES 3 A 258 LYS LYS GLU THR ASN LEU CYS LEU SER ALA ASP VAL SER SEQRES 4 A 258 LEU ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA LEU GLY SEQRES 5 A 258 PRO SER ILE CYS MET LEU LYS THR HIS VAL ASP ILE LEU SEQRES 6 A 258 ASN ASP PHE THR LEU ASP VAL MET LYS GLU LEU ILE THR SEQRES 7 A 258 LEU ALA LYS CSS HIS GLU PHE LEU ILE PHE GLU ASP ARG SEQRES 8 A 258 LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LYS GLN TYR SEQRES 9 A 258 GLU GLY GLY ILE PHE LYS ILE ALA SER TRP ALA ASP LEU SEQRES 10 A 258 VAL ASN ALA HIS VAL VAL PRO GLY SER GLY VAL VAL LYS SEQRES 11 A 258 GLY LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG GLY CYS SEQRES 12 A 258 LEU LEU ILE ALA GLU MET SER SER THR GLY SER LEU ALA SEQRES 13 A 258 THR GLY ASP TYR THR ARG ALA ALA VAL ARG MET ALA GLU SEQRES 14 A 258 GLU HIS SER GLU PHE VAL VAL GLY PHE ILE SER GLY SER SEQRES 15 A 258 ARG VAL SER MET LYS PRO GLU PHE LEU HIS LEU THR PRO SEQRES 16 A 258 GLY VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU GLY GLN SEQRES 17 A 258 GLN TYR ASN SER PRO GLN GLU VAL ILE GLY LYS ARG GLY SEQRES 18 A 258 SER ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE SER ALA SEQRES 19 A 258 ALA ASP ARG LEU GLU ALA ALA GLU MET TYR ARG LYS ALA SEQRES 20 A 258 ALA TRP GLU ALA TYR LEU SER ARG LEU GLY VAL MODRES 9HVV CSS A 304 CYS MODIFIED RESIDUE HET CSS A 304 7 HET U6M A 501 22 HET PRO A 502 8 HET PRO A 503 8 HET SO4 A 504 5 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM U6M 6-METHYLURIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM PRO PROLINE HETNAM SO4 SULFATE ION FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 U6M C10 H15 N2 O9 P FORMUL 3 PRO 2(C5 H9 N O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *306(H2 O) HELIX 1 AA1 SER A 226 ALA A 231 1 6 HELIX 2 AA2 HIS A 237 GLU A 251 1 15 HELIX 3 AA3 LEU A 262 GLY A 274 1 13 HELIX 4 AA4 PRO A 275 ILE A 277 5 3 HELIX 5 AA5 HIS A 283 LEU A 287 5 5 HELIX 6 AA6 THR A 291 GLU A 306 1 16 HELIX 7 AA7 ILE A 318 GLY A 328 1 11 HELIX 8 AA8 LYS A 332 TRP A 336 5 5 HELIX 9 AA9 SER A 348 LEU A 359 1 12 HELIX 10 AB1 GLY A 380 HIS A 393 1 14 HELIX 11 AB2 SER A 434 LYS A 441 1 8 HELIX 12 AB3 GLY A 450 SER A 455 1 6 HELIX 13 AB4 ASP A 458 GLY A 479 1 22 SHEET 1 AA1 9 LEU A 254 SER A 257 0 SHEET 2 AA1 9 MET A 279 THR A 282 1 O LYS A 281 N LEU A 256 SHEET 3 AA1 9 LEU A 308 PHE A 315 1 O ASP A 312 N THR A 282 SHEET 4 AA1 9 LEU A 339 HIS A 343 1 O HIS A 343 N PHE A 315 SHEET 5 AA1 9 GLY A 364 ILE A 368 1 O ILE A 368 N ALA A 342 SHEET 6 AA1 9 VAL A 397 ILE A 401 1 O VAL A 398 N CYS A 365 SHEET 7 AA1 9 LEU A 413 THR A 416 1 O LEU A 415 N PHE A 400 SHEET 8 AA1 9 ILE A 446 VAL A 449 1 O ILE A 446 N THR A 416 SHEET 9 AA1 9 LEU A 254 SER A 257 1 N CYS A 255 O ILE A 447 SHEET 1 AA2 2 GLY A 424 GLY A 425 0 SHEET 2 AA2 2 GLN A 431 TYR A 432 -1 O TYR A 432 N GLY A 424 LINK C LYS A 303 N CSS A 304 1555 1555 1.32 LINK C CSS A 304 N HIS A 305 1555 1555 1.33 CRYST1 77.375 116.687 62.027 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016122 0.00000 CONECT 697 704 CONECT 704 697 705 CONECT 705 704 706 709 CONECT 706 705 707 CONECT 707 706 708 CONECT 708 707 CONECT 709 705 710 711 CONECT 710 709 CONECT 711 709 CONECT 2245 2246 CONECT 2246 2245 2247 2253 CONECT 2247 2246 2248 CONECT 2248 2247 2249 2250 CONECT 2249 2248 CONECT 2250 2248 2251 CONECT 2251 2250 2252 2253 CONECT 2252 2251 CONECT 2253 2246 2251 2254 CONECT 2254 2253 2255 2256 CONECT 2255 2254 2260 CONECT 2256 2254 2257 2258 CONECT 2257 2256 CONECT 2258 2256 2259 2260 CONECT 2259 2258 CONECT 2260 2255 2258 2261 CONECT 2261 2260 2262 CONECT 2262 2261 2263 CONECT 2263 2262 2264 2265 2266 CONECT 2264 2263 CONECT 2265 2263 CONECT 2266 2263 CONECT 2283 2284 2285 2286 2287 CONECT 2284 2283 CONECT 2285 2283 CONECT 2286 2283 CONECT 2287 2283 MASTER 361 0 5 13 11 0 0 6 2315 1 36 20 END