data_9I3E # _entry.id 9I3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9I3E pdb_00009i3e 10.2210/pdb9i3e/pdb WWPDB D_1292144832 ? ? EMDB EMD-52588 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-11-26 ? 2 'EM metadata' 1 0 2025-11-26 ? 3 'Additional map' 1 0 2025-11-26 1 4 FSC 1 0 2025-11-26 ? 5 'Half map' 1 0 2025-11-26 1 6 'Half map' 1 0 2025-11-26 2 7 Image 1 0 2025-11-26 ? 8 'Primary map' 1 0 2025-11-26 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9I3E _pdbx_database_status.recvd_initial_deposition_date 2025-01-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CP of RHDV mutant - 29N' _pdbx_database_related.db_id EMD-52588 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email jrcaston@cnb.csic.es _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Caston _pdbx_contact_author.name_mi R _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2350-9048 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Novoa, G.' 1 0000-0002-3018-9743 'Martinez-Romero, J.M.' 2 0000-0002-0370-9440 'Perez-Mata, C.' 3 0000-0003-3381-7431 'Barcena, J.' 4 0000-0001-6050-0654 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of RHDV mutant 29N at 3.0 Angstroms resolution' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Novoa, G.' 1 0000-0002-3018-9743 primary 'Martinez-Romero, J.M.' 2 0000-0002-0370-9440 primary 'Perez-Mata, C.' 3 0000-0003-3381-7431 primary 'Barcena, J.' 4 0000-0001-6050-0654 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Capsid protein VP60' _entity.formula_weight 18819.111 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGPPQQVDQQETWRTNFYYNDVFTWSVADAPGSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFAVAGSGAFGGRVAA AVIPPGIEIGPGLEVRQFPHVVIDARSLEPVTNTMPDLRPNMYHPTGDPGLVPTLVLAVYNALINPFGGSTSAIQVTVET RPSEDFEFVMIRAP ; _entity_poly.pdbx_seq_one_letter_code_can ;GGPPQQVDQQETWRTNFYYNDVFTWSVADAPGSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFAVAGSGAFGGRVAA AVIPPGIEIGPGLEVRQFPHVVIDARSLEPVTNTMPDLRPNMYHPTGDPGLVPTLVLAVYNALINPFGGSTSAIQVTVET RPSEDFEFVMIRAP ; _entity_poly.pdbx_strand_id 0 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 PRO n 1 4 PRO n 1 5 GLN n 1 6 GLN n 1 7 VAL n 1 8 ASP n 1 9 GLN n 1 10 GLN n 1 11 GLU n 1 12 THR n 1 13 TRP n 1 14 ARG n 1 15 THR n 1 16 ASN n 1 17 PHE n 1 18 TYR n 1 19 TYR n 1 20 ASN n 1 21 ASP n 1 22 VAL n 1 23 PHE n 1 24 THR n 1 25 TRP n 1 26 SER n 1 27 VAL n 1 28 ALA n 1 29 ASP n 1 30 ALA n 1 31 PRO n 1 32 GLY n 1 33 SER n 1 34 ILE n 1 35 LEU n 1 36 TYR n 1 37 THR n 1 38 VAL n 1 39 GLN n 1 40 HIS n 1 41 SER n 1 42 PRO n 1 43 GLN n 1 44 ASN n 1 45 ASN n 1 46 PRO n 1 47 PHE n 1 48 THR n 1 49 ALA n 1 50 VAL n 1 51 LEU n 1 52 SER n 1 53 GLN n 1 54 MET n 1 55 TYR n 1 56 ALA n 1 57 GLY n 1 58 TRP n 1 59 ALA n 1 60 GLY n 1 61 GLY n 1 62 MET n 1 63 GLN n 1 64 PHE n 1 65 ARG n 1 66 PHE n 1 67 ALA n 1 68 VAL n 1 69 ALA n 1 70 GLY n 1 71 SER n 1 72 GLY n 1 73 ALA n 1 74 PHE n 1 75 GLY n 1 76 GLY n 1 77 ARG n 1 78 VAL n 1 79 ALA n 1 80 ALA n 1 81 ALA n 1 82 VAL n 1 83 ILE n 1 84 PRO n 1 85 PRO n 1 86 GLY n 1 87 ILE n 1 88 GLU n 1 89 ILE n 1 90 GLY n 1 91 PRO n 1 92 GLY n 1 93 LEU n 1 94 GLU n 1 95 VAL n 1 96 ARG n 1 97 GLN n 1 98 PHE n 1 99 PRO n 1 100 HIS n 1 101 VAL n 1 102 VAL n 1 103 ILE n 1 104 ASP n 1 105 ALA n 1 106 ARG n 1 107 SER n 1 108 LEU n 1 109 GLU n 1 110 PRO n 1 111 VAL n 1 112 THR n 1 113 ASN n 1 114 THR n 1 115 MET n 1 116 PRO n 1 117 ASP n 1 118 LEU n 1 119 ARG n 1 120 PRO n 1 121 ASN n 1 122 MET n 1 123 TYR n 1 124 HIS n 1 125 PRO n 1 126 THR n 1 127 GLY n 1 128 ASP n 1 129 PRO n 1 130 GLY n 1 131 LEU n 1 132 VAL n 1 133 PRO n 1 134 THR n 1 135 LEU n 1 136 VAL n 1 137 LEU n 1 138 ALA n 1 139 VAL n 1 140 TYR n 1 141 ASN n 1 142 ALA n 1 143 LEU n 1 144 ILE n 1 145 ASN n 1 146 PRO n 1 147 PHE n 1 148 GLY n 1 149 GLY n 1 150 SER n 1 151 THR n 1 152 SER n 1 153 ALA n 1 154 ILE n 1 155 GLN n 1 156 VAL n 1 157 THR n 1 158 VAL n 1 159 GLU n 1 160 THR n 1 161 ARG n 1 162 PRO n 1 163 SER n 1 164 GLU n 1 165 ASP n 1 166 PHE n 1 167 GLU n 1 168 PHE n 1 169 VAL n 1 170 MET n 1 171 ILE n 1 172 ARG n 1 173 ALA n 1 174 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 174 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ORF1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rabbit hemorrhagic disease virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11976 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 56 56 GLY GLY 0 . n A 1 2 GLY 2 57 57 GLY GLY 0 . n A 1 3 PRO 3 58 58 PRO PRO 0 . n A 1 4 PRO 4 59 59 PRO PRO 0 . n A 1 5 GLN 5 60 60 GLN GLN 0 . n A 1 6 GLN 6 61 61 GLN GLN 0 . n A 1 7 VAL 7 62 62 VAL VAL 0 . n A 1 8 ASP 8 63 63 ASP ASP 0 . n A 1 9 GLN 9 64 64 GLN GLN 0 . n A 1 10 GLN 10 65 65 GLN GLN 0 . n A 1 11 GLU 11 66 66 GLU GLU 0 . n A 1 12 THR 12 67 67 THR THR 0 . n A 1 13 TRP 13 68 68 TRP TRP 0 . n A 1 14 ARG 14 69 69 ARG ARG 0 . n A 1 15 THR 15 70 70 THR THR 0 . n A 1 16 ASN 16 71 71 ASN ASN 0 . n A 1 17 PHE 17 72 72 PHE PHE 0 . n A 1 18 TYR 18 73 73 TYR TYR 0 . n A 1 19 TYR 19 74 74 TYR TYR 0 . n A 1 20 ASN 20 75 75 ASN ASN 0 . n A 1 21 ASP 21 76 76 ASP ASP 0 . n A 1 22 VAL 22 77 77 VAL VAL 0 . n A 1 23 PHE 23 78 78 PHE PHE 0 . n A 1 24 THR 24 79 79 THR THR 0 . n A 1 25 TRP 25 80 80 TRP TRP 0 . n A 1 26 SER 26 81 81 SER SER 0 . n A 1 27 VAL 27 82 82 VAL VAL 0 . n A 1 28 ALA 28 83 83 ALA ALA 0 . n A 1 29 ASP 29 84 84 ASP ASP 0 . n A 1 30 ALA 30 85 85 ALA ALA 0 . n A 1 31 PRO 31 86 86 PRO PRO 0 . n A 1 32 GLY 32 87 87 GLY GLY 0 . n A 1 33 SER 33 88 88 SER SER 0 . n A 1 34 ILE 34 89 89 ILE ILE 0 . n A 1 35 LEU 35 90 90 LEU LEU 0 . n A 1 36 TYR 36 91 91 TYR TYR 0 . n A 1 37 THR 37 92 92 THR THR 0 . n A 1 38 VAL 38 93 93 VAL VAL 0 . n A 1 39 GLN 39 94 94 GLN GLN 0 . n A 1 40 HIS 40 95 95 HIS HIS 0 . n A 1 41 SER 41 96 96 SER SER 0 . n A 1 42 PRO 42 97 97 PRO PRO 0 . n A 1 43 GLN 43 98 98 GLN GLN 0 . n A 1 44 ASN 44 99 99 ASN ASN 0 . n A 1 45 ASN 45 100 100 ASN ASN 0 . n A 1 46 PRO 46 101 101 PRO PRO 0 . n A 1 47 PHE 47 102 102 PHE PHE 0 . n A 1 48 THR 48 103 103 THR THR 0 . n A 1 49 ALA 49 104 104 ALA ALA 0 . n A 1 50 VAL 50 105 105 VAL VAL 0 . n A 1 51 LEU 51 106 106 LEU LEU 0 . n A 1 52 SER 52 107 107 SER SER 0 . n A 1 53 GLN 53 108 108 GLN GLN 0 . n A 1 54 MET 54 109 109 MET MET 0 . n A 1 55 TYR 55 110 110 TYR TYR 0 . n A 1 56 ALA 56 111 111 ALA ALA 0 . n A 1 57 GLY 57 112 112 GLY GLY 0 . n A 1 58 TRP 58 113 113 TRP TRP 0 . n A 1 59 ALA 59 114 114 ALA ALA 0 . n A 1 60 GLY 60 115 115 GLY GLY 0 . n A 1 61 GLY 61 116 116 GLY GLY 0 . n A 1 62 MET 62 117 117 MET MET 0 . n A 1 63 GLN 63 118 118 GLN GLN 0 . n A 1 64 PHE 64 119 119 PHE PHE 0 . n A 1 65 ARG 65 120 120 ARG ARG 0 . n A 1 66 PHE 66 121 121 PHE PHE 0 . n A 1 67 ALA 67 122 122 ALA ALA 0 . n A 1 68 VAL 68 123 123 VAL VAL 0 . n A 1 69 ALA 69 124 124 ALA ALA 0 . n A 1 70 GLY 70 125 125 GLY GLY 0 . n A 1 71 SER 71 126 126 SER SER 0 . n A 1 72 GLY 72 127 127 GLY GLY 0 . n A 1 73 ALA 73 128 128 ALA ALA 0 . n A 1 74 PHE 74 129 129 PHE PHE 0 . n A 1 75 GLY 75 130 130 GLY GLY 0 . n A 1 76 GLY 76 131 131 GLY GLY 0 . n A 1 77 ARG 77 132 132 ARG ARG 0 . n A 1 78 VAL 78 133 133 VAL VAL 0 . n A 1 79 ALA 79 134 134 ALA ALA 0 . n A 1 80 ALA 80 135 135 ALA ALA 0 . n A 1 81 ALA 81 136 136 ALA ALA 0 . n A 1 82 VAL 82 137 137 VAL VAL 0 . n A 1 83 ILE 83 138 138 ILE ILE 0 . n A 1 84 PRO 84 139 139 PRO PRO 0 . n A 1 85 PRO 85 140 140 PRO PRO 0 . n A 1 86 GLY 86 141 141 GLY GLY 0 . n A 1 87 ILE 87 142 142 ILE ILE 0 . n A 1 88 GLU 88 143 143 GLU GLU 0 . n A 1 89 ILE 89 144 144 ILE ILE 0 . n A 1 90 GLY 90 145 145 GLY GLY 0 . n A 1 91 PRO 91 146 146 PRO PRO 0 . n A 1 92 GLY 92 147 147 GLY GLY 0 . n A 1 93 LEU 93 148 148 LEU LEU 0 . n A 1 94 GLU 94 149 149 GLU GLU 0 . n A 1 95 VAL 95 150 150 VAL VAL 0 . n A 1 96 ARG 96 151 151 ARG ARG 0 . n A 1 97 GLN 97 152 152 GLN GLN 0 . n A 1 98 PHE 98 153 153 PHE PHE 0 . n A 1 99 PRO 99 154 154 PRO PRO 0 . n A 1 100 HIS 100 155 155 HIS HIS 0 . n A 1 101 VAL 101 156 156 VAL VAL 0 . n A 1 102 VAL 102 157 157 VAL VAL 0 . n A 1 103 ILE 103 158 158 ILE ILE 0 . n A 1 104 ASP 104 159 159 ASP ASP 0 . n A 1 105 ALA 105 160 160 ALA ALA 0 . n A 1 106 ARG 106 161 161 ARG ARG 0 . n A 1 107 SER 107 162 162 SER SER 0 . n A 1 108 LEU 108 163 163 LEU LEU 0 . n A 1 109 GLU 109 164 164 GLU GLU 0 . n A 1 110 PRO 110 165 165 PRO PRO 0 . n A 1 111 VAL 111 166 166 VAL VAL 0 . n A 1 112 THR 112 167 167 THR THR 0 . n A 1 113 ASN 113 168 168 ASN ASN 0 . n A 1 114 THR 114 169 169 THR THR 0 . n A 1 115 MET 115 170 170 MET MET 0 . n A 1 116 PRO 116 171 171 PRO PRO 0 . n A 1 117 ASP 117 172 172 ASP ASP 0 . n A 1 118 LEU 118 173 173 LEU LEU 0 . n A 1 119 ARG 119 174 174 ARG ARG 0 . n A 1 120 PRO 120 175 175 PRO PRO 0 . n A 1 121 ASN 121 176 176 ASN ASN 0 . n A 1 122 MET 122 177 177 MET MET 0 . n A 1 123 TYR 123 178 178 TYR TYR 0 . n A 1 124 HIS 124 179 179 HIS HIS 0 . n A 1 125 PRO 125 180 180 PRO PRO 0 . n A 1 126 THR 126 181 181 THR THR 0 . n A 1 127 GLY 127 182 182 GLY GLY 0 . n A 1 128 ASP 128 183 183 ASP ASP 0 . n A 1 129 PRO 129 184 184 PRO PRO 0 . n A 1 130 GLY 130 185 185 GLY GLY 0 . n A 1 131 LEU 131 186 186 LEU LEU 0 . n A 1 132 VAL 132 187 187 VAL VAL 0 . n A 1 133 PRO 133 188 188 PRO PRO 0 . n A 1 134 THR 134 189 189 THR THR 0 . n A 1 135 LEU 135 190 190 LEU LEU 0 . n A 1 136 VAL 136 191 191 VAL VAL 0 . n A 1 137 LEU 137 192 192 LEU LEU 0 . n A 1 138 ALA 138 193 193 ALA ALA 0 . n A 1 139 VAL 139 194 194 VAL VAL 0 . n A 1 140 TYR 140 195 195 TYR TYR 0 . n A 1 141 ASN 141 196 196 ASN ASN 0 . n A 1 142 ALA 142 197 197 ALA ALA 0 . n A 1 143 LEU 143 198 198 LEU LEU 0 . n A 1 144 ILE 144 199 199 ILE ILE 0 . n A 1 145 ASN 145 200 200 ASN ASN 0 . n A 1 146 PRO 146 201 201 PRO PRO 0 . n A 1 147 PHE 147 202 202 PHE PHE 0 . n A 1 148 GLY 148 203 203 GLY GLY 0 . n A 1 149 GLY 149 204 204 GLY GLY 0 . n A 1 150 SER 150 205 205 SER SER 0 . n A 1 151 THR 151 206 206 THR THR 0 . n A 1 152 SER 152 207 207 SER SER 0 . n A 1 153 ALA 153 208 208 ALA ALA 0 . n A 1 154 ILE 154 209 209 ILE ILE 0 . n A 1 155 GLN 155 210 210 GLN GLN 0 . n A 1 156 VAL 156 211 211 VAL VAL 0 . n A 1 157 THR 157 212 212 THR THR 0 . n A 1 158 VAL 158 213 213 VAL VAL 0 . n A 1 159 GLU 159 214 214 GLU GLU 0 . n A 1 160 THR 160 215 215 THR THR 0 . n A 1 161 ARG 161 216 216 ARG ARG 0 . n A 1 162 PRO 162 217 217 PRO PRO 0 . n A 1 163 SER 163 218 218 SER SER 0 . n A 1 164 GLU 164 219 219 GLU GLU 0 . n A 1 165 ASP 165 220 220 ASP ASP 0 . n A 1 166 PHE 166 221 221 PHE PHE 0 . n A 1 167 GLU 167 222 222 GLU GLU 0 . n A 1 168 PHE 168 223 223 PHE PHE 0 . n A 1 169 VAL 169 224 224 VAL VAL 0 . n A 1 170 MET 170 225 225 MET MET 0 . n A 1 171 ILE 171 226 226 ILE ILE 0 . n A 1 172 ARG 172 227 227 ARG ARG 0 . n A 1 173 ALA 173 228 228 ALA ALA 0 . n A 1 174 PRO 174 229 229 PRO PRO 0 . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9I3E _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9I3E _struct.title 'CP of RHDV mutant - 29N' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9I3E _struct_keywords.text 'Calicivirus, cryoEM, VLP, Assembly, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLG_RHDVA _struct_ref.pdbx_db_accession Q86119 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGPPQQVDQQETWRTNFYYNDVFTWSVADAPGSILYTVQHSPQNNPFTAVLSQMYAGWAGGMQFRFIVAGSGVFGGRLVA AVIPPGIEIGPGLEVRQFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTSAIQVTVET RPSEDFEFVMIRAP ; _struct_ref.pdbx_align_begin 1821 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9I3E _struct_ref_seq.pdbx_strand_id 0 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 174 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86119 _struct_ref_seq.db_align_beg 1821 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1994 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 56 _struct_ref_seq.pdbx_auth_seq_align_end 229 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9I3E ALA 0 67 ? UNP Q86119 ILE 1887 conflict 122 1 1 9I3E ALA 0 73 ? UNP Q86119 VAL 1893 conflict 128 2 1 9I3E VAL 0 78 ? UNP Q86119 LEU 1898 conflict 133 3 1 9I3E ALA 0 79 ? UNP Q86119 VAL 1899 conflict 134 4 1 9I3E ASN 0 113 ? UNP Q86119 ILE 1933 conflict 168 5 1 9I3E ALA 0 138 ? UNP Q86119 SER 1958 conflict 193 6 1 9I3E ALA 0 142 ? UNP Q86119 ASN 1962 conflict 197 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 60-meric _pdbx_struct_assembly.oligomeric_count 60 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60 ; _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 -0.000000 0.000000 0.00000 -0.000000 1.000000 -0.000000 0.00000 0.000000 -0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.309017 0.500000 -0.809017 164.40000 0.500000 -0.809017 -0.309017 266.00479 -0.809017 -0.309017 -0.500000 430.40479 3 'point symmetry operation' ? ? 0.000000 0.000000 -1.000000 328.80000 -1.000000 0.000000 0.000000 328.80000 -0.000000 1.000000 -0.000000 0.00000 4 'point symmetry operation' ? ? -0.309017 0.500000 -0.809017 266.00479 0.500000 0.809017 0.309017 -101.60479 0.809017 -0.309017 -0.500000 164.40000 5 'point symmetry operation' ? ? -0.809017 0.309017 -0.500000 328.80000 -0.309017 0.500000 0.809017 -0.00000 0.500000 0.809017 -0.309017 0.00000 6 'point symmetry operation' ? ? 0.500000 0.809017 -0.309017 0.00000 0.809017 -0.309017 0.500000 -0.00000 0.309017 -0.500000 -0.809017 328.80000 7 'point symmetry operation' ? ? 0.309017 -0.500000 -0.809017 328.80000 -0.500000 -0.809017 0.309017 328.80000 -0.809017 0.309017 -0.500000 328.80000 8 'point symmetry operation' ? ? -0.309017 -0.500000 -0.809017 430.40479 0.500000 -0.809017 0.309017 164.40000 -0.809017 -0.309017 0.500000 266.00479 9 'point symmetry operation' ? ? -0.500000 0.809017 -0.309017 164.40000 -0.809017 -0.309017 0.500000 266.00479 0.309017 0.500000 0.809017 -101.60479 10 'point symmetry operation' ? ? 0.809017 0.309017 -0.500000 62.79521 0.309017 0.500000 0.809017 -101.60479 0.500000 -0.809017 0.309017 164.40000 11 'point symmetry operation' ? ? -0.000000 1.000000 -0.000000 -0.00000 0.000000 -0.000000 1.000000 0.00000 1.000000 -0.000000 0.000000 -0.00000 12 'point symmetry operation' ? ? 0.809017 -0.309017 -0.500000 164.40000 0.309017 -0.500000 0.809017 62.79521 -0.500000 -0.809017 -0.309017 430.40479 13 'point symmetry operation' ? ? -0.809017 -0.309017 -0.500000 430.40479 -0.309017 -0.500000 0.809017 164.40000 -0.500000 0.809017 0.309017 62.79521 14 'point symmetry operation' ? ? -0.500000 -0.809017 0.309017 328.80000 0.809017 -0.309017 0.500000 -0.00000 -0.309017 0.500000 0.809017 0.00000 15 'point symmetry operation' ? ? -0.309017 0.500000 0.809017 -0.00000 -0.500000 -0.809017 0.309017 328.80000 0.809017 -0.309017 0.500000 -0.00000 16 'point symmetry operation' ? ? 0.809017 -0.309017 0.500000 0.00000 -0.309017 0.500000 0.809017 -0.00000 -0.500000 -0.809017 0.309017 328.80000 17 'point symmetry operation' ? ? 0.809017 0.309017 0.500000 -101.60479 -0.309017 -0.500000 0.809017 164.40000 0.500000 -0.809017 -0.309017 266.00479 18 'point symmetry operation' ? ? 0.000000 -1.000000 -0.000000 328.80000 0.000000 0.000000 1.000000 -0.00000 -1.000000 0.000000 -0.000000 328.80000 19 'point symmetry operation' ? ? -0.809017 0.309017 0.500000 164.40000 0.309017 -0.500000 0.809017 62.79521 0.500000 0.809017 0.309017 -101.60479 20 'point symmetry operation' ? ? -0.000000 0.000000 1.000000 -0.00000 1.000000 -0.000000 -0.000000 0.00000 -0.000000 1.000000 0.000000 -0.00000 21 'point symmetry operation' ? ? 0.309017 -0.500000 0.809017 62.79521 -0.500000 -0.809017 -0.309017 430.40479 0.809017 -0.309017 -0.500000 164.40000 22 'point symmetry operation' ? ? -0.309017 -0.500000 0.809017 164.40000 -0.500000 0.809017 0.309017 62.79521 -0.809017 -0.309017 -0.500000 430.40479 23 'point symmetry operation' ? ? 0.500000 -0.809017 0.309017 164.40000 -0.809017 -0.309017 0.500000 266.00479 -0.309017 -0.500000 -0.809017 430.40479 24 'point symmetry operation' ? ? -0.809017 -0.309017 0.500000 266.00479 0.309017 0.500000 0.809017 -101.60479 -0.500000 0.809017 -0.309017 164.40000 25 'point symmetry operation' ? ? 0.309017 0.500000 0.809017 -101.60479 0.500000 -0.809017 0.309017 164.40000 0.809017 0.309017 -0.500000 62.79521 26 'point symmetry operation' ? ? 0.500000 0.809017 0.309017 -101.60479 0.809017 -0.309017 -0.500000 164.40000 -0.309017 0.500000 -0.809017 266.00479 27 'point symmetry operation' ? ? 0.500000 -0.809017 -0.309017 266.00479 -0.809017 -0.309017 -0.500000 430.40479 0.309017 0.500000 -0.809017 164.40000 28 'point symmetry operation' ? ? -1.000000 -0.000000 -0.000000 328.80000 -0.000000 1.000000 -0.000000 -0.00000 -0.000000 -0.000000 -1.000000 328.80000 29 'point symmetry operation' ? ? -0.500000 -0.809017 -0.309017 430.40479 -0.809017 0.309017 0.500000 164.40000 -0.309017 0.500000 -0.809017 266.00479 30 'point symmetry operation' ? ? -0.500000 0.809017 0.309017 62.79521 0.809017 0.309017 0.500000 -101.60479 0.309017 0.500000 -0.809017 164.40000 31 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 -0.00000 0.000000 -1.000000 0.000000 328.80000 0.000000 0.000000 -1.000000 328.80000 32 'point symmetry operation' ? ? 0.309017 0.500000 -0.809017 164.40000 -0.500000 0.809017 0.309017 62.79521 0.809017 0.309017 0.500000 -101.60479 33 'point symmetry operation' ? ? -0.000000 -0.000000 -1.000000 328.80000 1.000000 -0.000000 0.000000 -0.00000 0.000000 -1.000000 -0.000000 328.80000 34 'point symmetry operation' ? ? -0.309017 0.500000 -0.809017 266.00479 -0.500000 -0.809017 -0.309017 430.40479 -0.809017 0.309017 0.500000 164.40000 35 'point symmetry operation' ? ? -0.809017 0.309017 -0.500000 328.80000 0.309017 -0.500000 -0.809017 328.80000 -0.500000 -0.809017 0.309017 328.80000 36 'point symmetry operation' ? ? 0.500000 0.809017 -0.309017 -0.00000 -0.809017 0.309017 -0.500000 328.80000 -0.309017 0.500000 0.809017 -0.00000 37 'point symmetry operation' ? ? 0.309017 -0.500000 -0.809017 328.80000 0.500000 0.809017 -0.309017 -0.00000 0.809017 -0.309017 0.500000 0.00000 38 'point symmetry operation' ? ? -0.309017 -0.500000 -0.809017 430.40479 -0.500000 0.809017 -0.309017 164.40000 0.809017 0.309017 -0.500000 62.79521 39 'point symmetry operation' ? ? -0.500000 0.809017 -0.309017 164.40000 0.809017 0.309017 -0.500000 62.79521 -0.309017 -0.500000 -0.809017 430.40479 40 'point symmetry operation' ? ? 0.809017 0.309017 -0.500000 62.79521 -0.309017 -0.500000 -0.809017 430.40479 -0.500000 0.809017 -0.309017 164.40000 41 'point symmetry operation' ? ? -0.000000 1.000000 0.000000 -0.00000 -0.000000 -0.000000 -1.000000 328.80000 -1.000000 0.000000 -0.000000 328.80000 42 'point symmetry operation' ? ? 0.809017 -0.309017 -0.500000 164.40000 -0.309017 0.500000 -0.809017 266.00479 0.500000 0.809017 0.309017 -101.60479 43 'point symmetry operation' ? ? -0.809017 -0.309017 -0.500000 430.40479 0.309017 0.500000 -0.809017 164.40000 0.500000 -0.809017 -0.309017 266.00479 44 'point symmetry operation' ? ? -0.500000 -0.809017 0.309017 328.80000 -0.809017 0.309017 -0.500000 328.80000 0.309017 -0.500000 -0.809017 328.80000 45 'point symmetry operation' ? ? -0.309017 0.500000 0.809017 0.00000 0.500000 0.809017 -0.309017 -0.00000 -0.809017 0.309017 -0.500000 328.80000 46 'point symmetry operation' ? ? 0.809017 -0.309017 0.500000 -0.00000 0.309017 -0.500000 -0.809017 328.80000 0.500000 0.809017 -0.309017 -0.00000 47 'point symmetry operation' ? ? 0.809017 0.309017 0.500000 -101.60479 0.309017 0.500000 -0.809017 164.40000 -0.500000 0.809017 0.309017 62.79521 48 'point symmetry operation' ? ? 0.000000 -1.000000 0.000000 328.80000 -0.000000 0.000000 -1.000000 328.80000 1.000000 -0.000000 0.000000 0.00000 49 'point symmetry operation' ? ? -0.809017 0.309017 0.500000 164.40000 -0.309017 0.500000 -0.809017 266.00479 -0.500000 -0.809017 -0.309017 430.40479 50 'point symmetry operation' ? ? 0.000000 -0.000000 1.000000 -0.00000 -1.000000 0.000000 -0.000000 328.80000 0.000000 -1.000000 0.000000 328.80000 51 'point symmetry operation' ? ? 0.309017 -0.500000 0.809017 62.79521 0.500000 0.809017 0.309017 -101.60479 -0.809017 0.309017 0.500000 164.40000 52 'point symmetry operation' ? ? -0.309017 -0.500000 0.809017 164.40000 0.500000 -0.809017 -0.309017 266.00479 0.809017 0.309017 0.500000 -101.60479 53 'point symmetry operation' ? ? 0.500000 -0.809017 0.309017 164.40000 0.809017 0.309017 -0.500000 62.79521 0.309017 0.500000 0.809017 -101.60479 54 'point symmetry operation' ? ? -0.809017 -0.309017 0.500000 266.00479 -0.309017 -0.500000 -0.809017 430.40479 0.500000 -0.809017 0.309017 164.40000 55 'point symmetry operation' ? ? 0.309017 0.500000 0.809017 -101.60479 -0.500000 0.809017 -0.309017 164.40000 -0.809017 -0.309017 0.500000 266.00479 56 'point symmetry operation' ? ? 0.500000 0.809017 0.309017 -101.60479 -0.809017 0.309017 0.500000 164.40000 0.309017 -0.500000 0.809017 62.79521 57 'point symmetry operation' ? ? 0.500000 -0.809017 -0.309017 266.00479 0.809017 0.309017 0.500000 -101.60479 -0.309017 -0.500000 0.809017 164.40000 58 'point symmetry operation' ? ? -1.000000 0.000000 -0.000000 328.80000 0.000000 -1.000000 0.000000 328.80000 -0.000000 0.000000 1.000000 0.00000 59 'point symmetry operation' ? ? -0.500000 -0.809017 -0.309017 430.40479 0.809017 -0.309017 -0.500000 164.40000 0.309017 -0.500000 0.809017 62.79521 60 'point symmetry operation' ? ? -0.500000 0.809017 0.309017 62.79521 -0.809017 -0.309017 -0.500000 430.40479 -0.309017 -0.500000 0.809017 164.40000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 45 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id MET _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 54 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id 0 _struct_conf.beg_auth_seq_id 100 _struct_conf.end_auth_comp_id MET _struct_conf.end_auth_asym_id 0 _struct_conf.end_auth_seq_id 109 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 18 ? SER A 26 ? TYR 0 73 SER 0 81 AA1 2 ALA A 153 ? PRO A 162 ? ALA 0 208 PRO 0 217 AA1 3 MET A 62 ? ALA A 69 ? MET 0 117 ALA 0 124 AA1 4 VAL A 111 ? MET A 115 ? VAL 0 166 MET 0 170 AA2 1 ILE A 34 ? GLN A 39 ? ILE 0 89 GLN 0 94 AA2 2 THR A 134 ? ILE A 144 ? THR 0 189 ILE 0 199 AA2 3 GLY A 75 ? ILE A 83 ? GLY 0 130 ILE 0 138 AA2 4 HIS A 100 ? ASP A 104 ? HIS 0 155 ASP 0 159 AA3 1 TYR A 55 ? ALA A 59 ? TYR 0 110 ALA 0 114 AA3 2 GLU A 167 ? ILE A 171 ? GLU 0 222 ILE 0 226 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 25 ? N TRP 0 80 O ILE A 154 ? O ILE 0 209 AA1 2 3 O GLU A 159 ? O GLU 0 214 N ARG A 65 ? N ARG 0 120 AA1 3 4 N PHE A 64 ? N PHE 0 119 O ASN A 113 ? O ASN 0 168 AA2 1 2 N VAL A 38 ? N VAL 0 93 O LEU A 135 ? O LEU 0 190 AA2 2 3 O ALA A 138 ? O ALA 0 193 N ALA A 79 ? N ALA 0 134 AA2 3 4 N VAL A 78 ? N VAL 0 133 O ILE A 103 ? O ILE 0 158 AA3 1 2 N ALA A 56 ? N ALA 0 111 O MET A 170 ? O MET 0 225 # _pdbx_entry_details.entry_id 9I3E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP 0 63 ? ? 62.20 68.48 2 1 GLN 0 65 ? ? -49.84 84.09 3 1 GLU 0 66 ? ? -144.25 36.65 4 1 THR 0 67 ? ? 61.74 -75.14 5 1 ARG 0 69 ? ? 81.49 -6.47 6 1 TYR 0 91 ? ? 57.60 71.62 7 1 GLN 0 98 ? ? -88.55 48.70 8 1 ALA 0 128 ? ? -99.93 34.34 9 1 LEU 0 192 ? ? -105.35 78.13 10 1 ASN 0 196 ? ? 79.25 117.13 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id 0 _pdbx_validate_planes.auth_seq_id 227 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.081 _pdbx_validate_planes.type 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9I3E _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 9I3E _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 302069 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'PBS-V (0.2 M sodium phosphate, 0.1 M NaCl, pH 6.0)' _em_buffer.pH 6.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Rabbit hemorrhagic disease virus' _em_entity_assembly.details 'VLPs of mutant RHDV 29N' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9I3E _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS TALOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2300 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER/RHODIUM _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 9I3E _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9I3E _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 MET N N N N 188 MET CA C N S 189 MET C C N N 190 MET O O N N 191 MET CB C N N 192 MET CG C N N 193 MET SD S N N 194 MET CE C N N 195 MET OXT O N N 196 MET H H N N 197 MET H2 H N N 198 MET HA H N N 199 MET HB2 H N N 200 MET HB3 H N N 201 MET HG2 H N N 202 MET HG3 H N N 203 MET HE1 H N N 204 MET HE2 H N N 205 MET HE3 H N N 206 MET HXT H N N 207 PHE N N N N 208 PHE CA C N S 209 PHE C C N N 210 PHE O O N N 211 PHE CB C N N 212 PHE CG C Y N 213 PHE CD1 C Y N 214 PHE CD2 C Y N 215 PHE CE1 C Y N 216 PHE CE2 C Y N 217 PHE CZ C Y N 218 PHE OXT O N N 219 PHE H H N N 220 PHE H2 H N N 221 PHE HA H N N 222 PHE HB2 H N N 223 PHE HB3 H N N 224 PHE HD1 H N N 225 PHE HD2 H N N 226 PHE HE1 H N N 227 PHE HE2 H N N 228 PHE HZ H N N 229 PHE HXT H N N 230 PRO N N N N 231 PRO CA C N S 232 PRO C C N N 233 PRO O O N N 234 PRO CB C N N 235 PRO CG C N N 236 PRO CD C N N 237 PRO OXT O N N 238 PRO H H N N 239 PRO HA H N N 240 PRO HB2 H N N 241 PRO HB3 H N N 242 PRO HG2 H N N 243 PRO HG3 H N N 244 PRO HD2 H N N 245 PRO HD3 H N N 246 PRO HXT H N N 247 SER N N N N 248 SER CA C N S 249 SER C C N N 250 SER O O N N 251 SER CB C N N 252 SER OG O N N 253 SER OXT O N N 254 SER H H N N 255 SER H2 H N N 256 SER HA H N N 257 SER HB2 H N N 258 SER HB3 H N N 259 SER HG H N N 260 SER HXT H N N 261 THR N N N N 262 THR CA C N S 263 THR C C N N 264 THR O O N N 265 THR CB C N R 266 THR OG1 O N N 267 THR CG2 C N N 268 THR OXT O N N 269 THR H H N N 270 THR H2 H N N 271 THR HA H N N 272 THR HB H N N 273 THR HG1 H N N 274 THR HG21 H N N 275 THR HG22 H N N 276 THR HG23 H N N 277 THR HXT H N N 278 TRP N N N N 279 TRP CA C N S 280 TRP C C N N 281 TRP O O N N 282 TRP CB C N N 283 TRP CG C Y N 284 TRP CD1 C Y N 285 TRP CD2 C Y N 286 TRP NE1 N Y N 287 TRP CE2 C Y N 288 TRP CE3 C Y N 289 TRP CZ2 C Y N 290 TRP CZ3 C Y N 291 TRP CH2 C Y N 292 TRP OXT O N N 293 TRP H H N N 294 TRP H2 H N N 295 TRP HA H N N 296 TRP HB2 H N N 297 TRP HB3 H N N 298 TRP HD1 H N N 299 TRP HE1 H N N 300 TRP HE3 H N N 301 TRP HZ2 H N N 302 TRP HZ3 H N N 303 TRP HH2 H N N 304 TRP HXT H N N 305 TYR N N N N 306 TYR CA C N S 307 TYR C C N N 308 TYR O O N N 309 TYR CB C N N 310 TYR CG C Y N 311 TYR CD1 C Y N 312 TYR CD2 C Y N 313 TYR CE1 C Y N 314 TYR CE2 C Y N 315 TYR CZ C Y N 316 TYR OH O N N 317 TYR OXT O N N 318 TYR H H N N 319 TYR H2 H N N 320 TYR HA H N N 321 TYR HB2 H N N 322 TYR HB3 H N N 323 TYR HD1 H N N 324 TYR HD2 H N N 325 TYR HE1 H N N 326 TYR HE2 H N N 327 TYR HH H N N 328 TYR HXT H N N 329 VAL N N N N 330 VAL CA C N S 331 VAL C C N N 332 VAL O O N N 333 VAL CB C N N 334 VAL CG1 C N N 335 VAL CG2 C N N 336 VAL OXT O N N 337 VAL H H N N 338 VAL H2 H N N 339 VAL HA H N N 340 VAL HB H N N 341 VAL HG11 H N N 342 VAL HG12 H N N 343 VAL HG13 H N N 344 VAL HG21 H N N 345 VAL HG22 H N N 346 VAL HG23 H N N 347 VAL HXT H N N 348 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 MET N CA sing N N 179 MET N H sing N N 180 MET N H2 sing N N 181 MET CA C sing N N 182 MET CA CB sing N N 183 MET CA HA sing N N 184 MET C O doub N N 185 MET C OXT sing N N 186 MET CB CG sing N N 187 MET CB HB2 sing N N 188 MET CB HB3 sing N N 189 MET CG SD sing N N 190 MET CG HG2 sing N N 191 MET CG HG3 sing N N 192 MET SD CE sing N N 193 MET CE HE1 sing N N 194 MET CE HE2 sing N N 195 MET CE HE3 sing N N 196 MET OXT HXT sing N N 197 PHE N CA sing N N 198 PHE N H sing N N 199 PHE N H2 sing N N 200 PHE CA C sing N N 201 PHE CA CB sing N N 202 PHE CA HA sing N N 203 PHE C O doub N N 204 PHE C OXT sing N N 205 PHE CB CG sing N N 206 PHE CB HB2 sing N N 207 PHE CB HB3 sing N N 208 PHE CG CD1 doub Y N 209 PHE CG CD2 sing Y N 210 PHE CD1 CE1 sing Y N 211 PHE CD1 HD1 sing N N 212 PHE CD2 CE2 doub Y N 213 PHE CD2 HD2 sing N N 214 PHE CE1 CZ doub Y N 215 PHE CE1 HE1 sing N N 216 PHE CE2 CZ sing Y N 217 PHE CE2 HE2 sing N N 218 PHE CZ HZ sing N N 219 PHE OXT HXT sing N N 220 PRO N CA sing N N 221 PRO N CD sing N N 222 PRO N H sing N N 223 PRO CA C sing N N 224 PRO CA CB sing N N 225 PRO CA HA sing N N 226 PRO C O doub N N 227 PRO C OXT sing N N 228 PRO CB CG sing N N 229 PRO CB HB2 sing N N 230 PRO CB HB3 sing N N 231 PRO CG CD sing N N 232 PRO CG HG2 sing N N 233 PRO CG HG3 sing N N 234 PRO CD HD2 sing N N 235 PRO CD HD3 sing N N 236 PRO OXT HXT sing N N 237 SER N CA sing N N 238 SER N H sing N N 239 SER N H2 sing N N 240 SER CA C sing N N 241 SER CA CB sing N N 242 SER CA HA sing N N 243 SER C O doub N N 244 SER C OXT sing N N 245 SER CB OG sing N N 246 SER CB HB2 sing N N 247 SER CB HB3 sing N N 248 SER OG HG sing N N 249 SER OXT HXT sing N N 250 THR N CA sing N N 251 THR N H sing N N 252 THR N H2 sing N N 253 THR CA C sing N N 254 THR CA CB sing N N 255 THR CA HA sing N N 256 THR C O doub N N 257 THR C OXT sing N N 258 THR CB OG1 sing N N 259 THR CB CG2 sing N N 260 THR CB HB sing N N 261 THR OG1 HG1 sing N N 262 THR CG2 HG21 sing N N 263 THR CG2 HG22 sing N N 264 THR CG2 HG23 sing N N 265 THR OXT HXT sing N N 266 TRP N CA sing N N 267 TRP N H sing N N 268 TRP N H2 sing N N 269 TRP CA C sing N N 270 TRP CA CB sing N N 271 TRP CA HA sing N N 272 TRP C O doub N N 273 TRP C OXT sing N N 274 TRP CB CG sing N N 275 TRP CB HB2 sing N N 276 TRP CB HB3 sing N N 277 TRP CG CD1 doub Y N 278 TRP CG CD2 sing Y N 279 TRP CD1 NE1 sing Y N 280 TRP CD1 HD1 sing N N 281 TRP CD2 CE2 doub Y N 282 TRP CD2 CE3 sing Y N 283 TRP NE1 CE2 sing Y N 284 TRP NE1 HE1 sing N N 285 TRP CE2 CZ2 sing Y N 286 TRP CE3 CZ3 doub Y N 287 TRP CE3 HE3 sing N N 288 TRP CZ2 CH2 doub Y N 289 TRP CZ2 HZ2 sing N N 290 TRP CZ3 CH2 sing Y N 291 TRP CZ3 HZ3 sing N N 292 TRP CH2 HH2 sing N N 293 TRP OXT HXT sing N N 294 TYR N CA sing N N 295 TYR N H sing N N 296 TYR N H2 sing N N 297 TYR CA C sing N N 298 TYR CA CB sing N N 299 TYR CA HA sing N N 300 TYR C O doub N N 301 TYR C OXT sing N N 302 TYR CB CG sing N N 303 TYR CB HB2 sing N N 304 TYR CB HB3 sing N N 305 TYR CG CD1 doub Y N 306 TYR CG CD2 sing Y N 307 TYR CD1 CE1 sing Y N 308 TYR CD1 HD1 sing N N 309 TYR CD2 CE2 doub Y N 310 TYR CD2 HD2 sing N N 311 TYR CE1 CZ doub Y N 312 TYR CE1 HE1 sing N N 313 TYR CE2 CZ sing Y N 314 TYR CE2 HE2 sing N N 315 TYR CZ OH sing N N 316 TYR OH HH sing N N 317 TYR OXT HXT sing N N 318 VAL N CA sing N N 319 VAL N H sing N N 320 VAL N H2 sing N N 321 VAL CA C sing N N 322 VAL CA CB sing N N 323 VAL CA HA sing N N 324 VAL C O doub N N 325 VAL C OXT sing N N 326 VAL CB CG1 sing N N 327 VAL CB CG2 sing N N 328 VAL CB HB sing N N 329 VAL CG1 HG11 sing N N 330 VAL CG1 HG12 sing N N 331 VAL CG1 HG13 sing N N 332 VAL CG2 HG21 sing N N 333 VAL CG2 HG22 sing N N 334 VAL CG2 HG23 sing N N 335 VAL OXT HXT sing N N 336 # _em_admin.current_status REL _em_admin.deposition_date 2025-01-22 _em_admin.deposition_site PDBE _em_admin.entry_id 9I3E _em_admin.last_update 2025-11-26 _em_admin.map_release_date 2025-11-26 _em_admin.title 'Capsid of RHDV mutant - 29N' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 0.2 M ? 1 'Sodium phosphate' 1 0.1 M ? 2 'Sodium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 11976 _em_entity_assembly_naturalsource.organism 'Rabbit hemorrhagic disease virus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7111 _em_entity_assembly_recombinant.organism 'Trichoplusia ni' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 31.9 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4860 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 389808 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? ? OTHER ? 8 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 9986 _em_virus_natural_host.organism 'Oryctolagus cuniculus' _em_virus_natural_host.strain ? # _em_virus_shell.diameter 280.0 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name ? _em_virus_shell.triangulation 1 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2023-146143NB-I00 1 'Spanish Ministry of Science, Innovation, and Universities' Spain PID2022-140925OB-I00 2 # _atom_sites.entry_id 9I3E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #