HEADER ANTIVIRAL PROTEIN 24-JAN-25 9I41 TITLE STRUCTURE OF ANTI-EV71 HUMAN MONOCLONAL ANTIBODY 16-3-3C FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS EV71, ANTIBODY, 16-3-3C, FAB, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,J.REN,D.I.STUART REVDAT 1 04-FEB-26 9I41 0 JRNL AUTH D.ZHOU,J.REN,D.I.STUART JRNL TITL FINE ANTIGENIC MAPPING OF HUMAN ENTEROVIRUS 71 FROM JRNL TITL 2 STRUCTURES OF COGNATE COMPLEXES FOR A PANEL OF 12 PATIENT JRNL TITL 3 DERIVED MONOCLONAL ANTIBODIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 110932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.036 REMARK 3 FREE R VALUE TEST SET COUNT : 5587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 423 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29600 REMARK 3 B22 (A**2) : 0.03500 REMARK 3 B33 (A**2) : 0.26100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3576 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3277 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4910 ; 1.727 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7647 ; 0.647 ; 1.718 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 7.160 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 9.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;11.229 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4247 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 523 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 108 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1677 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.255 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1846 ; 7.428 ; 1.926 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1846 ; 7.426 ; 1.926 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2323 ; 9.956 ; 3.468 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2324 ; 9.956 ; 3.469 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1730 ; 8.678 ; 2.219 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1731 ; 8.676 ; 2.220 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2556 ;12.135 ; 3.896 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2557 ;12.133 ; 3.896 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6853 ; 4.546 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9I41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292144935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 78.416 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 69.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3350, 0.1 M BIS-TRIS, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.23050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.23050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.91300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.29350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.91300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.29350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.23050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.91300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.29350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.23050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.91300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.29350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER L 2 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS H 22 CA CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 547 O HOH H 544 1.95 REMARK 500 O PRO L 212 O HOH L 401 1.96 REMARK 500 O HOH L 409 O HOH L 525 1.98 REMARK 500 OE2 GLU H 89 O HOH H 401 2.05 REMARK 500 OD1 ASP L 97 O1 EDO L 307 2.09 REMARK 500 O HOH L 402 O HOH L 470 2.10 REMARK 500 O HOH L 505 O HOH L 573 2.11 REMARK 500 O HOH H 493 O HOH H 531 2.11 REMARK 500 O HOH H 589 O HOH H 590 2.12 REMARK 500 O HOH H 411 O HOH H 627 2.14 REMARK 500 O SER H 146 O HOH H 402 2.15 REMARK 500 O HOH H 523 O HOH H 562 2.15 REMARK 500 OD1 ASN H 213 O HOH H 403 2.15 REMARK 500 O PRO H 140 O HOH H 404 2.17 REMARK 500 OE1 GLU H 162 O HOH H 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN L 81 OE1 GLN L 81 3454 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU H 89 CD GLU H 89 OE1 -0.089 REMARK 500 GLU H 89 CD GLU H 89 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 154 CB - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 28 -95.00 -132.81 REMARK 500 ASN L 33 47.39 -104.64 REMARK 500 VAL L 53 -53.94 76.52 REMARK 500 ALA L 94 25.00 -141.85 REMARK 500 ASP L 155 -116.30 57.25 REMARK 500 PRO L 212 155.86 -48.35 REMARK 500 SER H 85 58.28 38.58 REMARK 500 SER H 146 41.16 -89.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY H 204 THR H 205 149.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 8 0.12 SIDE CHAIN REMARK 500 TYR L 144 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 675 DISTANCE = 6.57 ANGSTROMS DBREF 9I41 L 1 216 PDB 9I41 9I41 1 216 DBREF 9I41 H 1 238 PDB 9I41 9I41 1 238 SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO ARG SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER VAL THR ILE THR CYS THR GLY SER SER SEQRES 3 L 216 ILE ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR ASP SEQRES 5 L 216 VAL GLY LYS ARG PRO SER GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU THR ASP TYR TYR CYS CYS SEQRES 8 L 216 SER TYR ALA GLY SER ASP THR LEU VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 238 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 238 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 238 PHE THR PHE ASP ASP TYR VAL MET HIS TRP VAL ARG GLN SEQRES 4 H 238 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 H 238 TRP HIS GLY GLY SER ILE ALA TYR ALA GLY SER VAL LYS SEQRES 6 H 238 GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN SER SEQRES 7 H 238 LEU PHE LEU GLN MET ASN SER LEU ARG THR GLU ASP THR SEQRES 8 H 238 ALA LEU TYR PHE CYS ALA LYS ASP GLY PRO SER SER GLY SEQRES 9 H 238 TRP SER TYR GLN ASN TYR TYR ASN ALA MET ASP VAL TRP SEQRES 10 H 238 GLY GLN GLY THR THR VAL THR VAL SER SER ALA SER THR SEQRES 11 H 238 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 238 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 238 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 238 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 238 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 238 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 238 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 238 ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS HET CL L 301 1 HET CL L 302 1 HET CL L 303 1 HET EDO L 304 4 HET EDO L 305 4 HET EDO L 306 4 HET EDO L 307 4 HET EDO L 308 4 HET EDO L 309 4 HET EDO L 310 4 HET CL H 301 1 HET CL H 302 1 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 4 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 5(CL 1-) FORMUL 6 EDO 10(C2 H6 O2) FORMUL 18 HOH *507(H2 O) HELIX 1 AA1 GLN L 81 GLU L 85 5 5 HELIX 2 AA2 SER L 125 ALA L 131 1 7 HELIX 3 AA3 THR L 185 HIS L 192 1 8 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 GLY H 62 LYS H 65 5 4 HELIX 6 AA6 ASN H 74 ARG H 76 5 3 HELIX 7 AA7 ARG H 87 THR H 91 5 5 HELIX 8 AA8 SER H 141 GLY H 147 5 7 HELIX 9 AA9 SER H 170 ALA H 172 5 3 HELIX 10 AB1 SER H 201 LEU H 203 5 3 HELIX 11 AB2 LYS H 215 ASN H 218 5 4 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 105 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 3 AA1 5 ASP L 87 TYR L 93 -1 N TYR L 88 O THR L 105 SHEET 4 AA1 5 VAL L 35 GLN L 40 -1 N SER L 36 O CYS L 91 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O ILE L 49 N TRP L 37 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 105 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 3 AA2 4 ASP L 87 TYR L 93 -1 N TYR L 88 O THR L 105 SHEET 4 AA2 4 LEU L 99 PHE L 101 -1 O VAL L 100 N SER L 92 SHEET 1 AA3 3 VAL L 18 THR L 23 0 SHEET 2 AA3 3 THR L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA3 3 PHE L 64 SER L 69 -1 N SER L 67 O SER L 74 SHEET 1 AA4 4 THR L 118 PHE L 122 0 SHEET 2 AA4 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA4 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AA4 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AA5 4 THR L 118 PHE L 122 0 SHEET 2 AA5 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA5 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AA5 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AA6 4 SER L 157 VAL L 159 0 SHEET 2 AA6 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AA6 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AA6 4 SER L 204 VAL L 210 -1 O SER L 204 N HIS L 201 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA7 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AA8 6 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AA8 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 ILE H 58 TYR H 60 -1 O ALA H 59 N SER H 50 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AA9 4 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AA9 4 MET H 114 TRP H 117 -1 O VAL H 116 N LYS H 98 SHEET 1 AB1 4 SER H 134 LEU H 138 0 SHEET 2 AB1 4 THR H 149 TYR H 159 -1 O GLY H 153 N LEU H 138 SHEET 3 AB1 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB1 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB2 4 SER H 134 LEU H 138 0 SHEET 2 AB2 4 THR H 149 TYR H 159 -1 O GLY H 153 N LEU H 138 SHEET 3 AB2 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB2 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB3 3 THR H 165 TRP H 168 0 SHEET 2 AB3 3 ILE H 209 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB3 3 THR H 219 LYS H 224 -1 O VAL H 221 N VAL H 212 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.09 SSBOND 2 CYS L 138 CYS L 197 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.19 SSBOND 4 CYS H 154 CYS H 210 1555 1555 2.20 CISPEP 1 TYR L 144 PRO L 145 0 -1.60 CISPEP 2 GLY H 100 PRO H 101 0 0.64 CISPEP 3 PHE H 160 PRO H 161 0 -9.03 CISPEP 4 GLU H 162 PRO H 163 0 -3.89 CISPEP 5 GLU H 162 PRO H 163 0 -5.17 CRYST1 77.826 156.587 78.461 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012745 0.00000 CONECT 148 670 671 CONECT 670 148 CONECT 671 148 CONECT 1027 1481 CONECT 1481 1027 CONECT 1771 2383 CONECT 1772 2384 CONECT 2383 1771 CONECT 2384 1772 CONECT 2813 3277 CONECT 2814 3278 CONECT 3277 2813 CONECT 3278 2814 CONECT 3436 3437 3438 CONECT 3437 3436 CONECT 3438 3436 3439 CONECT 3439 3438 CONECT 3440 3441 3442 CONECT 3441 3440 CONECT 3442 3440 3443 CONECT 3443 3442 CONECT 3444 3445 3446 CONECT 3445 3444 CONECT 3446 3444 3447 CONECT 3447 3446 CONECT 3448 3449 3450 CONECT 3449 3448 CONECT 3450 3448 3451 CONECT 3451 3450 CONECT 3452 3453 3454 CONECT 3453 3452 CONECT 3454 3452 3455 CONECT 3455 3454 CONECT 3456 3457 3458 CONECT 3457 3456 CONECT 3458 3456 3459 CONECT 3459 3458 CONECT 3460 3461 3462 CONECT 3461 3460 CONECT 3462 3460 3463 CONECT 3463 3462 CONECT 3466 3467 3468 CONECT 3467 3466 CONECT 3468 3466 3469 CONECT 3469 3468 CONECT 3470 3471 3472 CONECT 3471 3470 CONECT 3472 3470 3473 CONECT 3473 3472 CONECT 3474 3475 3476 CONECT 3475 3474 CONECT 3476 3474 3477 CONECT 3477 3476 MASTER 446 0 15 11 49 0 0 6 3823 2 53 36 END