HEADER STRUCTURAL PROTEIN 27-JAN-25 9I5B TITLE CRYSTAL STRUCTURE OF PERLECAN REGION 3 MUTANT (P1019L) CONSTRUCT I876- TITLE 2 V1272 INCLUDING ONE LAMININ IV-LIKE AND FOUR LAMININ EGF-LIKE TITLE 3 DOMAINS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN COMPND 3 CORE PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: HSPG; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SINGLE POINT MUTATION AT P1019L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HSPG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762 KEYWDS BASEMENT MEMBRANE PROTEINS; PERLECAN;LAMININ IV-LIKE; LAMININ EGF- KEYWDS 2 LIKE DOMAINS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SOHAIL,M.K.KOSKI,L.W.RUDDOCK REVDAT 3 13-MAY-26 9I5B 1 AUTHOR REVDAT 2 21-MAY-25 9I5B 1 JRNL REVDAT 1 02-APR-25 9I5B 0 JRNL AUTH A.A.SOHAIL,M.K.KOSKI,L.W.RUDDOCK JRNL TITL STRUCTURAL INSIGHTS ON PERLECAN AND SCHWARTZ-JAMPEL JRNL TITL 2 SYNDROME. JRNL REF MATRIX BIOL. V. 138 1 2025 JRNL REFN ISSN 0945-053X JRNL PMID 40118124 JRNL DOI 10.1016/J.MATBIO.2025.03.002 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 41722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.777 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.37100 REMARK 3 B22 (A**2) : -1.31400 REMARK 3 B33 (A**2) : 3.45800 REMARK 3 B12 (A**2) : 1.50000 REMARK 3 B13 (A**2) : 0.30600 REMARK 3 B23 (A**2) : -2.90300 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5247 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7145 ; 1.870 ; 1.805 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 7.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ; 6.725 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;15.386 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4169 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2255 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3575 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 359 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2702 ; 3.073 ; 3.310 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3376 ; 4.888 ; 5.944 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2545 ; 4.578 ; 3.609 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3765 ; 7.035 ; 6.464 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 876 A 1156 NULL REMARK 3 1 B 876 B 1156 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 876 Ap 1301 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9557 -7.8634 -35.1782 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1297 REMARK 3 T33: 0.3025 T12: 0.0062 REMARK 3 T13: -0.0322 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.4625 L22: 0.2527 REMARK 3 L33: 1.4781 L12: -0.0736 REMARK 3 L13: -0.1145 L23: 0.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.2118 S13: 0.1050 REMARK 3 S21: -0.1154 S22: -0.0549 S23: 0.0132 REMARK 3 S31: 0.1389 S32: -0.1677 S33: 0.0494 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Bp 876 Bp 1301 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1405 -38.8115 -22.1769 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.0092 REMARK 3 T33: 0.2898 T12: 0.0126 REMARK 3 T13: 0.0373 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.2190 L22: 1.2741 REMARK 3 L33: 1.0917 L12: 0.3253 REMARK 3 L13: 0.3667 L23: 0.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0858 S13: -0.1476 REMARK 3 S21: -0.1262 S22: -0.0047 S23: -0.0640 REMARK 3 S31: 0.0429 S32: 0.0830 S33: -0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9I5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1292144958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7293 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.85M SUCCINIC ACID, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1268 REMARK 465 VAL A 1269 REMARK 465 PRO A 1270 REMARK 465 GLU A 1271 REMARK 465 VAL A 1272 REMARK 465 ARG B 1158 REMARK 465 CYS B 1159 REMARK 465 ASN B 1160 REMARK 465 CYS B 1161 REMARK 465 HIS B 1162 REMARK 465 GLY B 1163 REMARK 465 HIS B 1164 REMARK 465 SER B 1165 REMARK 465 GLU B 1166 REMARK 465 THR B 1167 REMARK 465 CYS B 1168 REMARK 465 GLU B 1169 REMARK 465 PRO B 1170 REMARK 465 GLU B 1171 REMARK 465 THR B 1172 REMARK 465 GLY B 1173 REMARK 465 ALA B 1174 REMARK 465 CYS B 1175 REMARK 465 GLN B 1176 REMARK 465 SER B 1177 REMARK 465 CYS B 1178 REMARK 465 GLN B 1179 REMARK 465 HIS B 1180 REMARK 465 HIS B 1181 REMARK 465 THR B 1182 REMARK 465 GLU B 1183 REMARK 465 GLY B 1184 REMARK 465 ALA B 1185 REMARK 465 SER B 1186 REMARK 465 CYS B 1187 REMARK 465 GLU B 1188 REMARK 465 GLN B 1189 REMARK 465 CYS B 1190 REMARK 465 GLN B 1191 REMARK 465 PRO B 1192 REMARK 465 GLY B 1193 REMARK 465 TYR B 1194 REMARK 465 TYR B 1195 REMARK 465 GLY B 1196 REMARK 465 ASP B 1197 REMARK 465 ALA B 1198 REMARK 465 GLN B 1199 REMARK 465 ARG B 1200 REMARK 465 GLY B 1201 REMARK 465 THR B 1202 REMARK 465 PRO B 1203 REMARK 465 GLN B 1204 REMARK 465 ASP B 1205 REMARK 465 CYS B 1206 REMARK 465 GLN B 1207 REMARK 465 PRO B 1208 REMARK 465 CYS B 1209 REMARK 465 PRO B 1210 REMARK 465 CYS B 1211 REMARK 465 TYR B 1212 REMARK 465 GLY B 1213 REMARK 465 ALA B 1214 REMARK 465 PRO B 1215 REMARK 465 ALA B 1216 REMARK 465 ALA B 1217 REMARK 465 GLY B 1218 REMARK 465 GLN B 1219 REMARK 465 ALA B 1220 REMARK 465 ALA B 1221 REMARK 465 HIS B 1222 REMARK 465 THR B 1223 REMARK 465 CYS B 1224 REMARK 465 PHE B 1225 REMARK 465 LEU B 1226 REMARK 465 ASP B 1227 REMARK 465 THR B 1228 REMARK 465 ASP B 1229 REMARK 465 GLY B 1230 REMARK 465 HIS B 1231 REMARK 465 PRO B 1232 REMARK 465 THR B 1233 REMARK 465 CYS B 1234 REMARK 465 ASP B 1235 REMARK 465 SER B 1236 REMARK 465 CYS B 1237 REMARK 465 SER B 1238 REMARK 465 PRO B 1239 REMARK 465 GLY B 1240 REMARK 465 HIS B 1241 REMARK 465 SER B 1242 REMARK 465 GLY B 1243 REMARK 465 ARG B 1244 REMARK 465 HIS B 1245 REMARK 465 CYS B 1246 REMARK 465 GLU B 1247 REMARK 465 ARG B 1248 REMARK 465 CYS B 1249 REMARK 465 ALA B 1250 REMARK 465 PRO B 1251 REMARK 465 GLY B 1252 REMARK 465 TYR B 1253 REMARK 465 TYR B 1254 REMARK 465 GLY B 1255 REMARK 465 ASN B 1256 REMARK 465 PRO B 1257 REMARK 465 SER B 1258 REMARK 465 GLN B 1259 REMARK 465 GLY B 1260 REMARK 465 GLN B 1261 REMARK 465 PRO B 1262 REMARK 465 CYS B 1263 REMARK 465 HIS B 1264 REMARK 465 ARG B 1265 REMARK 465 ASP B 1266 REMARK 465 GLY B 1267 REMARK 465 GLN B 1268 REMARK 465 VAL B 1269 REMARK 465 PRO B 1270 REMARK 465 GLU B 1271 REMARK 465 VAL B 1272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A1014 CG - SD - CE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A1101 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A1151 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 THR B 891 CA - CB - OG1 ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 888 39.13 -84.53 REMARK 500 HIS A 912 78.26 64.61 REMARK 500 MET A 927 25.99 49.19 REMARK 500 SER A 979 45.00 -159.70 REMARK 500 ARG A 998 -159.42 -111.98 REMARK 500 SER A1021 106.56 -179.27 REMARK 500 TYR A1093 -45.19 67.63 REMARK 500 PRO A1148 94.32 -57.52 REMARK 500 SER A1149 -147.73 -103.74 REMARK 500 LEU A1151 -55.81 111.89 REMARK 500 TYR A1152 -122.25 -123.60 REMARK 500 ALA A1220 -86.74 -56.32 REMARK 500 THR A1228 10.25 -58.70 REMARK 500 SER B 888 37.17 -86.12 REMARK 500 HIS B 912 77.75 67.71 REMARK 500 MET B 927 25.72 47.66 REMARK 500 SER B 979 51.27 -158.77 REMARK 500 ARG B 998 -159.07 -111.63 REMARK 500 SER B1021 104.86 174.74 REMARK 500 TYR B1093 -50.45 71.16 REMARK 500 VAL B1109 -167.77 -128.52 REMARK 500 SER B1149 51.80 -108.14 REMARK 500 TYR B1152 -147.15 63.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 9I5B A 876 1272 UNP Q05793 PGBM_MOUSE 876 1272 DBREF 9I5B B 876 1272 UNP Q05793 PGBM_MOUSE 876 1272 SEQADV 9I5B LEU A 1019 UNP Q05793 PRO 1019 ENGINEERED MUTATION SEQADV 9I5B LEU B 1019 UNP Q05793 PRO 1019 ENGINEERED MUTATION SEQRES 1 A 397 ILE VAL ARG CYS ASP GLU ARG GLY SER LEU GLY THR SER SEQRES 2 A 397 GLY GLU THR CYS ARG CYS LYS ASN ASN VAL VAL GLY ARG SEQRES 3 A 397 LEU CYS ASN GLU CYS SER ASP GLY SER PHE HIS LEU SER SEQRES 4 A 397 LYS GLN ASN PRO ASP GLY CYS LEU LYS CYS PHE CYS MET SEQRES 5 A 397 GLY VAL SER ARG GLN CYS SER SER SER SER TRP SER ARG SEQRES 6 A 397 ALA GLN VAL LEU GLY ALA SER GLU GLN PRO SER GLN PHE SEQRES 7 A 397 SER LEU SER ASN ALA ALA GLY THR HIS THR THR SER GLU SEQRES 8 A 397 GLY VAL SER SER PRO ALA PRO GLY GLU LEU SER PHE SER SEQRES 9 A 397 SER PHE HIS ASN LEU LEU SER GLU PRO TYR PHE TRP SER SEQRES 10 A 397 LEU PRO ALA SER PHE ARG GLY ASP LYS VAL THR SER TYR SEQRES 11 A 397 GLY GLY GLU LEU ARG PHE THR VAL MET GLN ARG PRO ARG SEQRES 12 A 397 LEU SER SER ALA PRO LEU HIS ARG GLN PRO LEU VAL VAL SEQRES 13 A 397 LEU GLN GLY ASN ASN ILE VAL LEU GLU HIS HIS ALA SER SEQRES 14 A 397 ARG ASP PRO SER PRO GLY GLN PRO SER ASN PHE ILE VAL SEQRES 15 A 397 PRO PHE GLN GLU GLN ALA TRP GLN ARG PRO ASP GLY GLN SEQRES 16 A 397 PRO ALA THR ARG GLU HIS LEU LEU MET ALA LEU ALA GLY SEQRES 17 A 397 ILE ASP ALA LEU LEU ILE GLN ALA SER TYR THR GLN GLN SEQRES 18 A 397 PRO ALA GLU SER ARG LEU SER GLY ILE SER MET ASP VAL SEQRES 19 A 397 ALA VAL PRO GLU ASN THR GLY GLN ASP SER ALA ARG GLU SEQRES 20 A 397 VAL GLU GLN CYS THR CYS PRO PRO GLY TYR ARG GLY PRO SEQRES 21 A 397 SER CYS GLN ASP CYS ASP THR GLY TYR THR ARG VAL PRO SEQRES 22 A 397 SER GLY LEU TYR LEU GLY THR CYS GLU ARG CYS ASN CYS SEQRES 23 A 397 HIS GLY HIS SER GLU THR CYS GLU PRO GLU THR GLY ALA SEQRES 24 A 397 CYS GLN SER CYS GLN HIS HIS THR GLU GLY ALA SER CYS SEQRES 25 A 397 GLU GLN CYS GLN PRO GLY TYR TYR GLY ASP ALA GLN ARG SEQRES 26 A 397 GLY THR PRO GLN ASP CYS GLN PRO CYS PRO CYS TYR GLY SEQRES 27 A 397 ALA PRO ALA ALA GLY GLN ALA ALA HIS THR CYS PHE LEU SEQRES 28 A 397 ASP THR ASP GLY HIS PRO THR CYS ASP SER CYS SER PRO SEQRES 29 A 397 GLY HIS SER GLY ARG HIS CYS GLU ARG CYS ALA PRO GLY SEQRES 30 A 397 TYR TYR GLY ASN PRO SER GLN GLY GLN PRO CYS HIS ARG SEQRES 31 A 397 ASP GLY GLN VAL PRO GLU VAL SEQRES 1 B 397 ILE VAL ARG CYS ASP GLU ARG GLY SER LEU GLY THR SER SEQRES 2 B 397 GLY GLU THR CYS ARG CYS LYS ASN ASN VAL VAL GLY ARG SEQRES 3 B 397 LEU CYS ASN GLU CYS SER ASP GLY SER PHE HIS LEU SER SEQRES 4 B 397 LYS GLN ASN PRO ASP GLY CYS LEU LYS CYS PHE CYS MET SEQRES 5 B 397 GLY VAL SER ARG GLN CYS SER SER SER SER TRP SER ARG SEQRES 6 B 397 ALA GLN VAL LEU GLY ALA SER GLU GLN PRO SER GLN PHE SEQRES 7 B 397 SER LEU SER ASN ALA ALA GLY THR HIS THR THR SER GLU SEQRES 8 B 397 GLY VAL SER SER PRO ALA PRO GLY GLU LEU SER PHE SER SEQRES 9 B 397 SER PHE HIS ASN LEU LEU SER GLU PRO TYR PHE TRP SER SEQRES 10 B 397 LEU PRO ALA SER PHE ARG GLY ASP LYS VAL THR SER TYR SEQRES 11 B 397 GLY GLY GLU LEU ARG PHE THR VAL MET GLN ARG PRO ARG SEQRES 12 B 397 LEU SER SER ALA PRO LEU HIS ARG GLN PRO LEU VAL VAL SEQRES 13 B 397 LEU GLN GLY ASN ASN ILE VAL LEU GLU HIS HIS ALA SER SEQRES 14 B 397 ARG ASP PRO SER PRO GLY GLN PRO SER ASN PHE ILE VAL SEQRES 15 B 397 PRO PHE GLN GLU GLN ALA TRP GLN ARG PRO ASP GLY GLN SEQRES 16 B 397 PRO ALA THR ARG GLU HIS LEU LEU MET ALA LEU ALA GLY SEQRES 17 B 397 ILE ASP ALA LEU LEU ILE GLN ALA SER TYR THR GLN GLN SEQRES 18 B 397 PRO ALA GLU SER ARG LEU SER GLY ILE SER MET ASP VAL SEQRES 19 B 397 ALA VAL PRO GLU ASN THR GLY GLN ASP SER ALA ARG GLU SEQRES 20 B 397 VAL GLU GLN CYS THR CYS PRO PRO GLY TYR ARG GLY PRO SEQRES 21 B 397 SER CYS GLN ASP CYS ASP THR GLY TYR THR ARG VAL PRO SEQRES 22 B 397 SER GLY LEU TYR LEU GLY THR CYS GLU ARG CYS ASN CYS SEQRES 23 B 397 HIS GLY HIS SER GLU THR CYS GLU PRO GLU THR GLY ALA SEQRES 24 B 397 CYS GLN SER CYS GLN HIS HIS THR GLU GLY ALA SER CYS SEQRES 25 B 397 GLU GLN CYS GLN PRO GLY TYR TYR GLY ASP ALA GLN ARG SEQRES 26 B 397 GLY THR PRO GLN ASP CYS GLN PRO CYS PRO CYS TYR GLY SEQRES 27 B 397 ALA PRO ALA ALA GLY GLN ALA ALA HIS THR CYS PHE LEU SEQRES 28 B 397 ASP THR ASP GLY HIS PRO THR CYS ASP SER CYS SER PRO SEQRES 29 B 397 GLY HIS SER GLY ARG HIS CYS GLU ARG CYS ALA PRO GLY SEQRES 30 B 397 TYR TYR GLY ASN PRO SER GLN GLY GLN PRO CYS HIS ARG SEQRES 31 B 397 ASP GLY GLN VAL PRO GLU VAL HET SIN A1301 8 HET SIN B1301 8 HETNAM SIN SUCCINIC ACID FORMUL 3 SIN 2(C4 H6 O4) FORMUL 5 HOH *232(H2 O) HELIX 1 AA1 PHE A 925 VAL A 929 5 5 HELIX 2 AA2 ALA A 946 GLU A 948 5 3 HELIX 3 AA3 GLN A 949 PHE A 953 5 5 HELIX 4 AA4 SER A 980 LEU A 984 5 5 HELIX 5 AA5 PRO A 994 ARG A 998 5 5 HELIX 6 AA6 LYS A 1001 TYR A 1005 5 5 HELIX 7 AA7 GLN A 1060 TRP A 1064 5 5 HELIX 8 AA8 THR A 1073 ALA A 1082 1 10 HELIX 9 AA9 ALA A 1198 GLY A 1201 5 4 HELIX 10 AB1 PHE B 925 VAL B 929 5 5 HELIX 11 AB2 ALA B 946 GLU B 948 5 3 HELIX 12 AB3 GLN B 949 PHE B 953 5 5 HELIX 13 AB4 SER B 980 LEU B 984 5 5 HELIX 14 AB5 PRO B 994 ARG B 998 5 5 HELIX 15 AB6 LYS B 1001 TYR B 1005 5 5 HELIX 16 AB7 GLN B 1060 TRP B 1064 5 5 HELIX 17 AB8 THR B 1073 ALA B 1082 1 10 SHEET 1 AA1 2 SER A 884 THR A 887 0 SHEET 2 AA1 2 CYS A 892 CYS A 894 -1 O ARG A 893 N LEU A 885 SHEET 1 AA2 2 VAL A 898 VAL A 899 0 SHEET 2 AA2 2 GLU A 905 CYS A 906 -1 O GLU A 905 N VAL A 899 SHEET 1 AA3 2 SER A 910 PHE A 911 0 SHEET 2 AA3 2 LEU A 922 LYS A 923 -1 O LEU A 922 N PHE A 911 SHEET 1 AA4 2 CYS A 933 SER A 935 0 SHEET 2 AA4 2 GLU A1124 CYS A1126 -1 O GLN A1125 N SER A 934 SHEET 1 AA5 4 SER A 939 LEU A 944 0 SHEET 2 AA5 4 PRO A1097 VAL A1111 -1 O VAL A1109 N ALA A 941 SHEET 3 AA5 4 GLU A 975 PHE A 978 -1 N LEU A 976 O LEU A1102 SHEET 4 AA5 4 SER A 969 ALA A 972 -1 N SER A 969 O SER A 977 SHEET 1 AA6 4 SER A 939 LEU A 944 0 SHEET 2 AA6 4 PRO A1097 VAL A1111 -1 O VAL A1109 N ALA A 941 SHEET 3 AA6 4 GLU A1008 PRO A1017 -1 N ARG A1016 O ALA A1098 SHEET 4 AA6 4 SER A1053 PRO A1058 -1 O VAL A1057 N LEU A1009 SHEET 1 AA7 6 THR A 963 THR A 964 0 SHEET 2 AA7 6 SER A 954 SER A 956 -1 N LEU A 955 O THR A 964 SHEET 3 AA7 6 PHE A 990 SER A 992 -1 O PHE A 990 N SER A 956 SHEET 4 AA7 6 ILE A1084 GLN A1090 -1 O ILE A1089 N TRP A 991 SHEET 5 AA7 6 VAL A1030 GLY A1034 -1 N GLN A1033 O ASP A1085 SHEET 6 AA7 6 ILE A1037 HIS A1041 -1 O HIS A1041 N VAL A1030 SHEET 1 AA8 2 TYR A1132 ARG A1133 0 SHEET 2 AA8 2 ASP A1139 CYS A1140 -1 O ASP A1139 N ARG A1133 SHEET 1 AA9 2 TYR A1144 VAL A1147 0 SHEET 2 AA9 2 THR A1155 ARG A1158 -1 O THR A1155 N VAL A1147 SHEET 1 AB1 2 THR A1167 CYS A1168 0 SHEET 2 AB1 2 CYS A1175 GLN A1176 -1 O GLN A1176 N THR A1167 SHEET 1 AB2 2 THR A1182 GLU A1183 0 SHEET 2 AB2 2 GLN A1189 CYS A1190 -1 O GLN A1189 N GLU A1183 SHEET 1 AB3 2 TYR A1194 GLY A1196 0 SHEET 2 AB3 2 CYS A1206 PRO A1208 -1 O GLN A1207 N TYR A1195 SHEET 1 AB4 2 CYS A1224 LEU A1226 0 SHEET 2 AB4 2 PRO A1232 CYS A1234 -1 O THR A1233 N PHE A1225 SHEET 1 AB5 2 TYR A1253 TYR A1254 0 SHEET 2 AB5 2 HIS A1264 ARG A1265 -1 O HIS A1264 N TYR A1254 SHEET 1 AB6 2 SER B 884 THR B 887 0 SHEET 2 AB6 2 CYS B 892 CYS B 894 -1 O ARG B 893 N LEU B 885 SHEET 1 AB7 2 VAL B 898 VAL B 899 0 SHEET 2 AB7 2 GLU B 905 CYS B 906 -1 O GLU B 905 N VAL B 899 SHEET 1 AB8 2 SER B 910 PHE B 911 0 SHEET 2 AB8 2 LEU B 922 LYS B 923 -1 O LEU B 922 N PHE B 911 SHEET 1 AB9 2 CYS B 933 SER B 935 0 SHEET 2 AB9 2 GLU B1124 CYS B1126 -1 O GLN B1125 N SER B 934 SHEET 1 AC1 4 SER B 939 LEU B 944 0 SHEET 2 AC1 4 PRO B1097 VAL B1111 -1 O VAL B1109 N ALA B 941 SHEET 3 AC1 4 GLU B 975 PHE B 978 -1 N LEU B 976 O LEU B1102 SHEET 4 AC1 4 SER B 969 ALA B 972 -1 N SER B 969 O SER B 977 SHEET 1 AC2 4 SER B 939 LEU B 944 0 SHEET 2 AC2 4 PRO B1097 VAL B1111 -1 O VAL B1109 N ALA B 941 SHEET 3 AC2 4 GLU B1008 PRO B1017 -1 N THR B1012 O SER B1103 SHEET 4 AC2 4 SER B1053 PRO B1058 -1 O VAL B1057 N LEU B1009 SHEET 1 AC3 6 THR B 963 THR B 964 0 SHEET 2 AC3 6 SER B 954 SER B 956 -1 N LEU B 955 O THR B 964 SHEET 3 AC3 6 PHE B 990 SER B 992 -1 O PHE B 990 N SER B 956 SHEET 4 AC3 6 ILE B1084 GLN B1090 -1 O ILE B1089 N TRP B 991 SHEET 5 AC3 6 VAL B1030 GLY B1034 -1 N GLN B1033 O ASP B1085 SHEET 6 AC3 6 ILE B1037 HIS B1041 -1 O HIS B1041 N VAL B1030 SHEET 1 AC4 2 TYR B1132 ARG B1133 0 SHEET 2 AC4 2 ASP B1139 CYS B1140 -1 O ASP B1139 N ARG B1133 SHEET 1 AC5 2 ARG B1146 VAL B1147 0 SHEET 2 AC5 2 THR B1155 CYS B1156 -1 O THR B1155 N VAL B1147 SSBOND 1 CYS A 879 CYS A 892 1555 1555 2.03 SSBOND 2 CYS A 894 CYS A 903 1555 1555 2.09 SSBOND 3 CYS A 906 CYS A 921 1555 1555 2.13 SSBOND 4 CYS A 924 CYS A 933 1555 1555 2.12 SSBOND 5 CYS A 926 CYS A 1126 1555 1555 2.08 SSBOND 6 CYS A 1128 CYS A 1137 1555 1555 2.11 SSBOND 7 CYS A 1140 CYS A 1156 1555 1555 2.04 SSBOND 8 CYS A 1159 CYS A 1168 1555 1555 2.12 SSBOND 9 CYS A 1161 CYS A 1175 1555 1555 2.09 SSBOND 10 CYS A 1178 CYS A 1187 1555 1555 2.07 SSBOND 11 CYS A 1190 CYS A 1206 1555 1555 2.04 SSBOND 12 CYS A 1209 CYS A 1224 1555 1555 2.06 SSBOND 13 CYS A 1211 CYS A 1234 1555 1555 2.06 SSBOND 14 CYS A 1237 CYS A 1246 1555 1555 2.03 SSBOND 15 CYS A 1249 CYS A 1263 1555 1555 2.09 SSBOND 16 CYS B 879 CYS B 892 1555 1555 2.07 SSBOND 17 CYS B 894 CYS B 903 1555 1555 2.07 SSBOND 18 CYS B 906 CYS B 921 1555 1555 2.08 SSBOND 19 CYS B 924 CYS B 933 1555 1555 2.11 SSBOND 20 CYS B 926 CYS B 1126 1555 1555 2.10 SSBOND 21 CYS B 1128 CYS B 1137 1555 1555 2.08 SSBOND 22 CYS B 1140 CYS B 1156 1555 1555 2.06 CRYST1 57.650 74.968 81.368 75.24 73.12 80.11 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017346 -0.003024 -0.004718 0.00000 SCALE2 0.000000 0.013540 -0.003017 0.00000 SCALE3 0.000000 0.000000 0.013158 0.00000 CONECT 32 121 CONECT 121 32 CONECT 138 206 CONECT 206 138 CONECT 229 339 CONECT 339 229 CONECT 362 430 CONECT 379 1910 CONECT 430 362 CONECT 1910 379 CONECT 1923 1987 CONECT 1987 1923 CONECT 2010 2128 CONECT 2128 2010 CONECT 2154 2220 CONECT 2168 2267 CONECT 2220 2154 CONECT 2267 2168 CONECT 2288 2354 CONECT 2354 2288 CONECT 2378 2500 CONECT 2500 2378 CONECT 2522 2619 CONECT 2535 2695 CONECT 2619 2522 CONECT 2695 2535 CONECT 2717 2782 CONECT 2782 2717 CONECT 2808 2908 CONECT 2908 2808 CONECT 2974 3063 CONECT 3063 2974 CONECT 3080 3148 CONECT 3148 3080 CONECT 3171 3286 CONECT 3286 3171 CONECT 3309 3377 CONECT 3326 4857 CONECT 3377 3309 CONECT 4857 3326 CONECT 4870 4934 CONECT 4934 4870 CONECT 4957 5075 CONECT 5075 4957 CONECT 5086 5087 5088 5089 CONECT 5087 5086 CONECT 5088 5086 CONECT 5089 5086 5090 CONECT 5090 5089 5091 CONECT 5091 5090 5092 5093 CONECT 5092 5091 CONECT 5093 5091 CONECT 5094 5095 5096 5097 CONECT 5095 5094 CONECT 5096 5094 CONECT 5097 5094 5098 CONECT 5098 5097 5099 CONECT 5099 5098 5100 5101 CONECT 5100 5099 CONECT 5101 5099 MASTER 460 0 2 17 62 0 0 6 5311 2 60 62 END