HEADER ISOMERASE 31-JAN-25 9I79 TITLE XYLOSE ISOMERASE COLLECTED AT 20C USING TIME-RESOLVED SERIAL TITLE 2 SYNCHROTRON CRYSTALLOGRAPHY WITH GLUCOSE AT 180 SECONDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE, SUGAR, SERIAL CRYSTALLOGRAPHY, TEMPERATURE, 5D-SSX, 5- KEYWDS 2 DIMENSIONAL CRYSTALLOGRAPHY EXPDTA X-RAY DIFFRACTION AUTHOR E.C.SCHULZ,A.PRESTER,D.V.STETTEN,G.GORE,C.E.HATTON,K.BARTELS, AUTHOR 2 J.P.LEIMKOHL,H.SCHIKORA,H.M.GINN,F.TELLKAMP,P.MEHRABI REVDAT 1 18-FEB-26 9I79 0 JRNL AUTH E.C.SCHULZ,A.PRESTER,D.V.STETTEN,G.GORE,C.E.HATTON, JRNL AUTH 2 K.BARTELS,J.P.LEIMKOHL,H.SCHIKORA,H.M.GINN,F.TELLKAMP, JRNL AUTH 3 P.MEHRABI JRNL TITL XYLOSE ISOMERASE COLLECTED AT 20C USING TIME-RESOLVED SERIAL JRNL TITL 2 SYNCHROTRON CRYSTALLOGRAPHY WITH GLUCOSE AT 180 SECONDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.4900 - 4.5400 1.00 2864 123 0.1669 0.1956 REMARK 3 2 4.5300 - 3.6000 1.00 2775 87 0.1438 0.1500 REMARK 3 3 3.6000 - 3.1500 1.00 2726 120 0.1577 0.2089 REMARK 3 4 3.1500 - 2.8600 1.00 2684 124 0.1745 0.2461 REMARK 3 5 2.8600 - 2.6500 1.00 2700 143 0.1714 0.1824 REMARK 3 6 2.6500 - 2.5000 1.00 2648 159 0.1722 0.2224 REMARK 3 7 2.5000 - 2.3700 1.00 2650 143 0.1645 0.1997 REMARK 3 8 2.3700 - 2.2700 1.00 2661 139 0.1630 0.1977 REMARK 3 9 2.2700 - 2.1800 1.00 2644 157 0.1591 0.2208 REMARK 3 10 2.1800 - 2.1100 1.00 2609 180 0.1594 0.2012 REMARK 3 11 2.1100 - 2.0400 1.00 2607 162 0.1673 0.1899 REMARK 3 12 2.0400 - 1.9800 1.00 2662 131 0.1910 0.2404 REMARK 3 13 1.9800 - 1.9300 1.00 2676 122 0.2056 0.2380 REMARK 3 14 1.9300 - 1.8800 1.00 2639 126 0.1899 0.2079 REMARK 3 15 1.8800 - 1.8400 1.00 2629 129 0.1779 0.2216 REMARK 3 16 1.8400 - 1.8000 1.00 2687 116 0.1890 0.2428 REMARK 3 17 1.8000 - 1.7600 1.00 2631 144 0.2116 0.2498 REMARK 3 18 1.7600 - 1.7300 1.00 2604 154 0.2639 0.3260 REMARK 3 19 1.7300 - 1.7000 1.00 2643 148 0.3077 0.3528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3368 REMARK 3 ANGLE : 1.290 4584 REMARK 3 CHIRALITY : 0.093 469 REMARK 3 PLANARITY : 0.017 635 REMARK 3 DIHEDRAL : 13.889 1271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9I79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1292145149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 71.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 116.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (35% (W/V) PEG 3350, 200 MM LISO4 AND REMARK 280 10 MM HEPES/NAOH, PH 7.5), BATCH MODE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.10000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.62500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.10000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.62500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.10000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.52500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.62500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.10000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.52500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 94.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 94.20000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 404 O HOH A 557 1.54 REMARK 500 O HOH A 593 O HOH A 761 2.00 REMARK 500 OE1 GLU A 210 O HOH A 501 2.07 REMARK 500 NH1 ARG A 266 O HOH A 502 2.08 REMARK 500 O HOH A 763 O HOH A 799 2.10 REMARK 500 NZ LYS A 289 O HOH A 503 2.11 REMARK 500 O HOH A 732 O HOH A 793 2.11 REMARK 500 OE1 GLU A 70 O HOH A 504 2.15 REMARK 500 O HOH A 644 O HOH A 818 2.16 REMARK 500 O HOH A 574 O HOH A 770 2.16 REMARK 500 OE2 GLU A 38 NH1 ARG A 42 2.16 REMARK 500 OD2 ASP A 28 O HOH A 505 2.17 REMARK 500 O HOH A 612 O HOH A 783 2.17 REMARK 500 O HOH A 549 O HOH A 795 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 604 O HOH A 785 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -73.08 -84.70 REMARK 500 ASP A 175 71.08 -101.16 REMARK 500 GLU A 186 107.32 80.94 REMARK 500 ASN A 247 -164.47 -170.88 REMARK 500 LYS A 253 -164.44 -162.84 REMARK 500 ALA A 343 63.49 -155.24 REMARK 500 PHE A 357 -67.68 -155.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 837 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 97.9 REMARK 620 3 ASP A 245 OD2 93.6 103.5 REMARK 620 4 ASP A 287 OD2 161.9 95.9 94.5 REMARK 620 5 GLC A 401 O3 80.2 94.8 161.3 87.0 REMARK 620 6 GLC A 401 O4 77.6 166.9 89.1 86.4 72.4 REMARK 620 7 GLO A 402 O2 83.7 86.4 170.0 85.6 8.7 80.9 REMARK 620 8 GLO A 402 O4 79.5 164.8 91.7 84.1 70.0 3.3 78.4 REMARK 620 9 HOH A 513 O 94.0 87.3 165.8 75.0 14.9 80.9 10.5 78.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE1 REMARK 620 2 GLU A 217 OE2 50.9 REMARK 620 3 HIS A 220 NE2 88.5 73.4 REMARK 620 4 ASP A 255 OD2 145.0 94.0 79.4 REMARK 620 5 GLC A 401 O3 79.0 129.9 107.1 136.0 REMARK 620 6 GLO A 402 O1 139.2 160.5 89.1 73.9 63.0 REMARK 620 7 GLO A 402 O2 74.6 125.5 107.8 140.4 4.6 67.5 REMARK 620 8 HOH A 513 O 69.4 119.7 117.1 145.0 15.1 75.7 11.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HIS A 220 NE2 76.7 REMARK 620 3 ASP A 255 OD1 106.8 94.5 REMARK 620 4 ASP A 255 OD2 167.8 96.3 63.3 REMARK 620 5 ASP A 257 OD1 91.6 165.2 80.1 93.6 REMARK 620 6 HOH A 557 O 95.1 103.7 154.3 96.3 86.1 REMARK 620 N 1 2 3 4 5 DBREF 9I79 A 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET GLC A 401 12 HET GLO A 402 12 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GLO D-GLUCOSE HETNAM MG MAGNESIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLO D-GLUCOSE IN LINEAR FORM FORMUL 2 GLC C6 H12 O6 FORMUL 3 GLO C6 H12 O6 FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *337(H2 O) HELIX 1 AA1 THR A 6 ASP A 9 5 4 HELIX 2 AA2 LEU A 15 GLY A 19 1 5 HELIX 3 AA3 ASP A 35 GLY A 47 1 13 HELIX 4 AA4 ASP A 55 ILE A 59 1 5 HELIX 5 AA5 SER A 64 GLY A 83 1 20 HELIX 6 AA6 HIS A 96 LYS A 100 5 5 HELIX 7 AA7 ASP A 108 GLY A 130 1 23 HELIX 8 AA8 SER A 145 LYS A 149 5 5 HELIX 9 AA9 ASP A 150 GLY A 173 1 24 HELIX 10 AB1 THR A 195 GLU A 204 1 10 HELIX 11 AB2 ARG A 208 GLU A 210 5 3 HELIX 12 AB3 GLU A 217 MET A 223 1 7 HELIX 13 AB4 ASN A 227 ALA A 238 1 12 HELIX 14 AB5 ASP A 264 GLY A 279 1 16 HELIX 15 AB6 ASP A 295 ASP A 323 1 29 HELIX 16 AB7 ASP A 323 SER A 333 1 11 HELIX 17 AB8 ARG A 334 ALA A 339 1 6 HELIX 18 AB9 GLY A 346 ASP A 353 1 8 HELIX 19 AC1 ARG A 354 PHE A 357 5 4 HELIX 20 AC2 ASP A 361 ARG A 368 1 8 HELIX 21 AC3 ALA A 371 LEU A 384 1 14 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 LYS A 85 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N PHE A 53 O THR A 90 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 LINK OE2 GLU A 181 MG MG A 403 1555 1555 1.93 LINK OE1 GLU A 217 MG MG A 403 1555 1555 2.08 LINK OE1 GLU A 217 MG MG A 404 1555 1555 2.58 LINK OE2 GLU A 217 MG MG A 404 1555 1555 2.50 LINK OE2 GLU A 217 MG MG A 405 1555 1555 2.03 LINK NE2 HIS A 220 MG MG A 404 1555 1555 2.24 LINK NE2 HIS A 220 MG MG A 405 1555 1555 2.50 LINK OD2 ASP A 245 MG MG A 403 1555 1555 2.16 LINK OD2 ASP A 255 MG MG A 404 1555 1555 2.97 LINK OD1 ASP A 255 MG MG A 405 1555 1555 2.18 LINK OD2 ASP A 255 MG MG A 405 1555 1555 2.00 LINK OD1 ASP A 257 MG MG A 405 1555 1555 2.14 LINK OD2 ASP A 287 MG MG A 403 1555 1555 1.97 LINK O3 AGLC A 401 MG MG A 403 1555 1555 2.35 LINK O4 AGLC A 401 MG MG A 403 1555 1555 2.29 LINK O3 AGLC A 401 MG MG A 404 1555 1555 2.54 LINK O2 CGLO A 402 MG MG A 403 1555 1555 2.19 LINK O4 CGLO A 402 MG MG A 403 1555 1555 2.15 LINK O1 CGLO A 402 MG MG A 404 1555 1555 2.59 LINK O2 CGLO A 402 MG MG A 404 1555 1555 2.22 LINK MG MG A 403 O DHOH A 513 1555 1555 1.94 LINK MG MG A 403 O DHOH A 518 1555 1555 1.79 LINK MG MG A 404 O DHOH A 513 1555 1555 2.27 LINK MG MG A 405 O HOH A 557 1555 1555 2.21 CISPEP 1 GLU A 186 PRO A 187 0 18.72 CRYST1 94.200 103.050 99.250 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010076 0.00000 CONECT 1501 3271 CONECT 1825 3271 3272 CONECT 1826 3272 3273 CONECT 1847 3272 3273 CONECT 2042 3271 CONECT 2128 3273 CONECT 2129 3272 3273 CONECT 2145 3273 CONECT 2411 3271 CONECT 3247 3248 3253 3257 CONECT 3248 3247 3249 3254 CONECT 3249 3248 3250 3255 CONECT 3250 3249 3251 3256 CONECT 3251 3250 3252 3257 CONECT 3252 3251 3258 CONECT 3253 3247 CONECT 3254 3248 CONECT 3255 3249 3271 3272 CONECT 3256 3250 3271 CONECT 3257 3247 3251 CONECT 3258 3252 CONECT 3259 3260 3265 CONECT 3260 3259 3261 3266 CONECT 3261 3260 3262 3267 CONECT 3262 3261 3263 3268 CONECT 3263 3262 3264 3269 CONECT 3264 3263 3270 CONECT 3265 3259 3272 CONECT 3266 3260 3271 3272 CONECT 3267 3261 CONECT 3268 3262 3271 CONECT 3269 3263 CONECT 3270 3264 CONECT 3271 1501 1825 2042 2411 CONECT 3271 3255 3256 3266 3268 CONECT 3271 3286 3291 CONECT 3272 1825 1826 1847 2129 CONECT 3272 3255 3265 3266 3286 CONECT 3273 1826 1847 2128 2129 CONECT 3273 2145 3330 CONECT 3286 3271 3272 CONECT 3291 3271 CONECT 3330 3273 MASTER 373 0 5 21 10 0 0 6 3405 1 43 30 END