data_9I9W # _entry.id 9I9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9I9W pdb_00009i9w 10.2210/pdb9i9w/pdb WWPDB D_1292145122 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-24 ? 2 'Structure model' 1 1 2025-10-01 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9I9W _pdbx_database_status.recvd_initial_deposition_date 2025-02-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email mpluta@ibch.poznan.pl _pdbx_contact_author.name_first Martyna _pdbx_contact_author.name_last Mateja-Pluta _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6570-6229 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mateja-Pluta, M.' 1 0000-0002-6570-6229 'Kiliszek, A.' 2 0000-0002-2871-7535 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Naphthyridine carbamate dimer ligand induces formation of Z-RNA-like fold of disease-related RNA and exhibits a molecular glue characteristics in crystal lattice formation. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf924 _citation.pdbx_database_id_PubMed 40966516 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mateja-Pluta, M.' 1 ? primary 'Blaszczyk, L.' 2 ? primary 'Bejger, M.' 3 ? primary 'Nakatani, K.' 4 0000-0002-1705-5265 primary 'Kiliszek, A.' 5 0000-0002-2871-7535 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*CP*AP*CP*UP*GP*GP*AP*AP*GP*UP*GP*C)-3') ; 4541.771 2 ? ? ? ? 2 non-polymer syn '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' 503.553 3 ? ? ? ? 3 water nat water 18.015 198 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCACUGGAAGUGC _entity_poly.pdbx_seq_one_letter_code_can GGCACUGGAAGUGC _entity_poly.pdbx_strand_id AAA,BBB _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' B2R 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 C n 1 6 U n 1 7 G n 1 8 G n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 G n 1 14 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 B2R non-polymer . '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' 'Naphthyridine Carbamate Dimer' 'C26 H29 N7 O4' 503.553 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G AAA . n A 1 2 G 2 2 2 G G AAA . n A 1 3 C 3 3 3 C C AAA . n A 1 4 A 4 4 4 A A AAA . n A 1 5 C 5 5 5 C C AAA . n A 1 6 U 6 6 6 U U AAA . n A 1 7 G 7 7 7 G G AAA . n A 1 8 G 8 8 8 G G AAA . n A 1 9 A 9 9 9 A A AAA . n A 1 10 A 10 10 10 A A AAA . n A 1 11 G 11 11 11 G G AAA . n A 1 12 U 12 12 12 U U AAA . n A 1 13 G 13 13 13 G G AAA . n A 1 14 C 14 14 14 C C AAA . n B 1 1 G 1 1 1 G G BBB . n B 1 2 G 2 2 2 G G BBB . n B 1 3 C 3 3 3 C C BBB . n B 1 4 A 4 4 4 A A BBB . n B 1 5 C 5 5 5 C C BBB . n B 1 6 U 6 6 6 U U BBB . n B 1 7 G 7 7 7 G G BBB . n B 1 8 G 8 8 8 G G BBB . n B 1 9 A 9 9 9 A A BBB . n B 1 10 A 10 10 10 A A BBB . n B 1 11 G 11 11 11 G G BBB . n B 1 12 U 12 12 12 U U BBB . n B 1 13 G 13 13 13 G G BBB . n B 1 14 C 14 14 14 C C BBB . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id B2R _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id B2R _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B2R 1 101 1 B2R NCD AAA . D 2 B2R 1 102 3 B2R NCD AAA . E 2 B2R 1 101 2 B2R NCD BBB . F 3 HOH 1 201 102 HOH HOH AAA . F 3 HOH 2 202 136 HOH HOH AAA . F 3 HOH 3 203 23 HOH HOH AAA . F 3 HOH 4 204 169 HOH HOH AAA . F 3 HOH 5 205 113 HOH HOH AAA . F 3 HOH 6 206 50 HOH HOH AAA . F 3 HOH 7 207 59 HOH HOH AAA . F 3 HOH 8 208 152 HOH HOH AAA . F 3 HOH 9 209 95 HOH HOH AAA . F 3 HOH 10 210 64 HOH HOH AAA . F 3 HOH 11 211 151 HOH HOH AAA . F 3 HOH 12 212 17 HOH HOH AAA . F 3 HOH 13 213 98 HOH HOH AAA . F 3 HOH 14 214 52 HOH HOH AAA . F 3 HOH 15 215 90 HOH HOH AAA . F 3 HOH 16 216 78 HOH HOH AAA . F 3 HOH 17 217 5 HOH HOH AAA . F 3 HOH 18 218 198 HOH HOH AAA . F 3 HOH 19 219 16 HOH HOH AAA . F 3 HOH 20 220 77 HOH HOH AAA . F 3 HOH 21 221 191 HOH HOH AAA . F 3 HOH 22 222 79 HOH HOH AAA . F 3 HOH 23 223 91 HOH HOH AAA . F 3 HOH 24 224 38 HOH HOH AAA . F 3 HOH 25 225 149 HOH HOH AAA . F 3 HOH 26 226 82 HOH HOH AAA . F 3 HOH 27 227 147 HOH HOH AAA . F 3 HOH 28 228 46 HOH HOH AAA . F 3 HOH 29 229 117 HOH HOH AAA . F 3 HOH 30 230 41 HOH HOH AAA . F 3 HOH 31 231 74 HOH HOH AAA . F 3 HOH 32 232 43 HOH HOH AAA . F 3 HOH 33 233 70 HOH HOH AAA . F 3 HOH 34 234 81 HOH HOH AAA . F 3 HOH 35 235 84 HOH HOH AAA . F 3 HOH 36 236 20 HOH HOH AAA . F 3 HOH 37 237 21 HOH HOH AAA . F 3 HOH 38 238 101 HOH HOH AAA . F 3 HOH 39 239 190 HOH HOH AAA . F 3 HOH 40 240 39 HOH HOH AAA . F 3 HOH 41 241 71 HOH HOH AAA . F 3 HOH 42 242 24 HOH HOH AAA . F 3 HOH 43 243 163 HOH HOH AAA . F 3 HOH 44 244 27 HOH HOH AAA . F 3 HOH 45 245 15 HOH HOH AAA . F 3 HOH 46 246 18 HOH HOH AAA . F 3 HOH 47 247 80 HOH HOH AAA . F 3 HOH 48 248 141 HOH HOH AAA . F 3 HOH 49 249 7 HOH HOH AAA . F 3 HOH 50 250 145 HOH HOH AAA . F 3 HOH 51 251 13 HOH HOH AAA . F 3 HOH 52 252 170 HOH HOH AAA . F 3 HOH 53 253 182 HOH HOH AAA . F 3 HOH 54 254 26 HOH HOH AAA . F 3 HOH 55 255 88 HOH HOH AAA . F 3 HOH 56 256 128 HOH HOH AAA . F 3 HOH 57 257 86 HOH HOH AAA . F 3 HOH 58 258 2 HOH HOH AAA . F 3 HOH 59 259 33 HOH HOH AAA . F 3 HOH 60 260 10 HOH HOH AAA . F 3 HOH 61 261 106 HOH HOH AAA . F 3 HOH 62 262 146 HOH HOH AAA . F 3 HOH 63 263 72 HOH HOH AAA . F 3 HOH 64 264 166 HOH HOH AAA . F 3 HOH 65 265 45 HOH HOH AAA . F 3 HOH 66 266 94 HOH HOH AAA . F 3 HOH 67 267 119 HOH HOH AAA . F 3 HOH 68 268 167 HOH HOH AAA . F 3 HOH 69 269 31 HOH HOH AAA . F 3 HOH 70 270 9 HOH HOH AAA . F 3 HOH 71 271 54 HOH HOH AAA . F 3 HOH 72 272 125 HOH HOH AAA . F 3 HOH 73 273 92 HOH HOH AAA . F 3 HOH 74 274 1 HOH HOH AAA . F 3 HOH 75 275 109 HOH HOH AAA . F 3 HOH 76 276 105 HOH HOH AAA . F 3 HOH 77 277 62 HOH HOH AAA . F 3 HOH 78 278 183 HOH HOH AAA . F 3 HOH 79 279 107 HOH HOH AAA . F 3 HOH 80 280 51 HOH HOH AAA . F 3 HOH 81 281 66 HOH HOH AAA . F 3 HOH 82 282 197 HOH HOH AAA . F 3 HOH 83 283 121 HOH HOH AAA . F 3 HOH 84 284 122 HOH HOH AAA . F 3 HOH 85 285 67 HOH HOH AAA . F 3 HOH 86 286 85 HOH HOH AAA . F 3 HOH 87 287 100 HOH HOH AAA . F 3 HOH 88 288 127 HOH HOH AAA . F 3 HOH 89 289 96 HOH HOH AAA . F 3 HOH 90 290 195 HOH HOH AAA . F 3 HOH 91 291 148 HOH HOH AAA . F 3 HOH 92 292 124 HOH HOH AAA . F 3 HOH 93 293 120 HOH HOH AAA . F 3 HOH 94 294 157 HOH HOH AAA . F 3 HOH 95 295 87 HOH HOH AAA . F 3 HOH 96 296 174 HOH HOH AAA . F 3 HOH 97 297 203 HOH HOH AAA . F 3 HOH 98 298 30 HOH HOH AAA . F 3 HOH 99 299 115 HOH HOH AAA . F 3 HOH 100 300 184 HOH HOH AAA . F 3 HOH 101 301 161 HOH HOH AAA . F 3 HOH 102 302 189 HOH HOH AAA . F 3 HOH 103 303 188 HOH HOH AAA . F 3 HOH 104 304 158 HOH HOH AAA . F 3 HOH 105 305 193 HOH HOH AAA . F 3 HOH 106 306 186 HOH HOH AAA . F 3 HOH 107 307 159 HOH HOH AAA . F 3 HOH 108 308 177 HOH HOH AAA . F 3 HOH 109 309 89 HOH HOH AAA . F 3 HOH 110 310 150 HOH HOH AAA . F 3 HOH 111 311 192 HOH HOH AAA . F 3 HOH 112 312 137 HOH HOH AAA . G 3 HOH 1 201 156 HOH HOH BBB . G 3 HOH 2 202 112 HOH HOH BBB . G 3 HOH 3 203 76 HOH HOH BBB . G 3 HOH 4 204 75 HOH HOH BBB . G 3 HOH 5 205 168 HOH HOH BBB . G 3 HOH 6 206 114 HOH HOH BBB . G 3 HOH 7 207 180 HOH HOH BBB . G 3 HOH 8 208 58 HOH HOH BBB . G 3 HOH 9 209 172 HOH HOH BBB . G 3 HOH 10 210 65 HOH HOH BBB . G 3 HOH 11 211 164 HOH HOH BBB . G 3 HOH 12 212 47 HOH HOH BBB . G 3 HOH 13 213 32 HOH HOH BBB . G 3 HOH 14 214 155 HOH HOH BBB . G 3 HOH 15 215 55 HOH HOH BBB . G 3 HOH 16 216 104 HOH HOH BBB . G 3 HOH 17 217 48 HOH HOH BBB . G 3 HOH 18 218 42 HOH HOH BBB . G 3 HOH 19 219 19 HOH HOH BBB . G 3 HOH 20 220 69 HOH HOH BBB . G 3 HOH 21 221 108 HOH HOH BBB . G 3 HOH 22 222 171 HOH HOH BBB . G 3 HOH 23 223 123 HOH HOH BBB . G 3 HOH 24 224 139 HOH HOH BBB . G 3 HOH 25 225 118 HOH HOH BBB . G 3 HOH 26 226 34 HOH HOH BBB . G 3 HOH 27 227 138 HOH HOH BBB . G 3 HOH 28 228 126 HOH HOH BBB . G 3 HOH 29 229 160 HOH HOH BBB . G 3 HOH 30 230 25 HOH HOH BBB . G 3 HOH 31 231 57 HOH HOH BBB . G 3 HOH 32 232 63 HOH HOH BBB . G 3 HOH 33 233 14 HOH HOH BBB . G 3 HOH 34 234 4 HOH HOH BBB . G 3 HOH 35 235 28 HOH HOH BBB . G 3 HOH 36 236 154 HOH HOH BBB . G 3 HOH 37 237 40 HOH HOH BBB . G 3 HOH 38 238 8 HOH HOH BBB . G 3 HOH 39 239 3 HOH HOH BBB . G 3 HOH 40 240 201 HOH HOH BBB . G 3 HOH 41 241 11 HOH HOH BBB . G 3 HOH 42 242 61 HOH HOH BBB . G 3 HOH 43 243 37 HOH HOH BBB . G 3 HOH 44 244 35 HOH HOH BBB . G 3 HOH 45 245 29 HOH HOH BBB . G 3 HOH 46 246 140 HOH HOH BBB . G 3 HOH 47 247 56 HOH HOH BBB . G 3 HOH 48 248 36 HOH HOH BBB . G 3 HOH 49 249 131 HOH HOH BBB . G 3 HOH 50 250 83 HOH HOH BBB . G 3 HOH 51 251 165 HOH HOH BBB . G 3 HOH 52 252 6 HOH HOH BBB . G 3 HOH 53 253 99 HOH HOH BBB . G 3 HOH 54 254 129 HOH HOH BBB . G 3 HOH 55 255 60 HOH HOH BBB . G 3 HOH 56 256 68 HOH HOH BBB . G 3 HOH 57 257 179 HOH HOH BBB . G 3 HOH 58 258 22 HOH HOH BBB . G 3 HOH 59 259 111 HOH HOH BBB . G 3 HOH 60 260 178 HOH HOH BBB . G 3 HOH 61 261 153 HOH HOH BBB . G 3 HOH 62 262 12 HOH HOH BBB . G 3 HOH 63 263 49 HOH HOH BBB . G 3 HOH 64 264 110 HOH HOH BBB . G 3 HOH 65 265 93 HOH HOH BBB . G 3 HOH 66 266 199 HOH HOH BBB . G 3 HOH 67 267 173 HOH HOH BBB . G 3 HOH 68 268 103 HOH HOH BBB . G 3 HOH 69 269 130 HOH HOH BBB . G 3 HOH 70 270 116 HOH HOH BBB . G 3 HOH 71 271 175 HOH HOH BBB . G 3 HOH 72 272 97 HOH HOH BBB . G 3 HOH 73 273 53 HOH HOH BBB . G 3 HOH 74 274 135 HOH HOH BBB . G 3 HOH 75 275 162 HOH HOH BBB . G 3 HOH 76 276 132 HOH HOH BBB . G 3 HOH 77 277 44 HOH HOH BBB . G 3 HOH 78 278 73 HOH HOH BBB . G 3 HOH 79 279 134 HOH HOH BBB . G 3 HOH 80 280 202 HOH HOH BBB . G 3 HOH 81 281 185 HOH HOH BBB . G 3 HOH 82 282 143 HOH HOH BBB . G 3 HOH 83 283 133 HOH HOH BBB . G 3 HOH 84 284 142 HOH HOH BBB . G 3 HOH 85 285 144 HOH HOH BBB . G 3 HOH 86 286 176 HOH HOH BBB . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9I9W _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.628 _cell.length_a_esd ? _cell.length_b 71.628 _cell.length_b_esd ? _cell.length_c 62.879 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9I9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9I9W _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01 M Magnesium acetate tetrahydrate, 0.05 M Sodium cacodylate trihydrate pH 6.5, 1.3 M Lithium sulfate monohydrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 292 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-10-20 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97626 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97626 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9I9W _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 47.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 26778 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.64 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4261 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.89 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.380 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.380 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.760 _refine.B_iso_max ? _refine.B_iso_mean 25.961 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.984 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9I9W _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.501 _refine.ls_d_res_low 47.299 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 26778 _refine.ls_number_reflns_R_free 899 _refine.ls_number_reflns_R_work 25879 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.989 _refine.ls_percent_reflns_R_free 3.357 _refine.ls_R_factor_all 0.129 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1661 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1282 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.048 _refine.pdbx_overall_ESU_R_Free 0.050 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.501 _refine_hist.d_res_low 47.299 _refine_hist.number_atoms_solvent 198 _refine_hist.number_atoms_total 911 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 602 _refine_hist.pdbx_number_atoms_ligand 111 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.011 908 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 410 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.616 1.246 1395 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.082 3.000 976 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.096 0.200 134 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.020 0.020 908 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.027 0.020 208 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.132 0.200 119 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.236 0.200 468 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.259 0.200 269 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 127 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.167 0.200 143 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.116 0.200 12 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.193 0.200 45 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.126 0.200 22 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.542 2.675 1 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.451 3.683 3 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.761 2.417 905 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.760 2.417 906 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 3.200 3.652 1390 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.199 3.653 1391 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.422 25.781 1262 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.423 25.789 1263 ? r_lrange_other ? ? 'X-RAY DIFFRACTION' ? 9.586 3.000 1315 ? r_rigid_bond_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.501 1.539 . . 64 1894 99.8980 . . . . 0.251 . . . . . . . . . . . 0.273 'X-RAY DIFFRACTION' 1.539 1.582 . . 67 1820 100.0000 . . . . 0.178 . . . . . . . . . . . 0.210 'X-RAY DIFFRACTION' 1.582 1.627 . . 63 1769 100.0000 . . . . 0.148 . . . . . . . . . . . 0.158 'X-RAY DIFFRACTION' 1.627 1.677 . . 60 1727 100.0000 . . . . 0.120 . . . . . . . . . . . 0.152 'X-RAY DIFFRACTION' 1.677 1.732 . . 65 1672 100.0000 . . . . 0.107 . . . . . . . . . . . 0.120 'X-RAY DIFFRACTION' 1.732 1.793 . . 63 1642 100.0000 . . . . 0.102 . . . . . . . . . . . 0.149 'X-RAY DIFFRACTION' 1.793 1.861 . . 51 1553 100.0000 . . . . 0.099 . . . . . . . . . . . 0.147 'X-RAY DIFFRACTION' 1.861 1.937 . . 69 1521 100.0000 . . . . 0.090 . . . . . . . . . . . 0.119 'X-RAY DIFFRACTION' 1.937 2.023 . . 43 1462 100.0000 . . . . 0.093 . . . . . . . . . . . 0.119 'X-RAY DIFFRACTION' 2.023 2.121 . . 35 1416 100.0000 . . . . 0.101 . . . . . . . . . . . 0.137 'X-RAY DIFFRACTION' 2.121 2.236 . . 38 1336 100.0000 . . . . 0.100 . . . . . . . . . . . 0.165 'X-RAY DIFFRACTION' 2.236 2.371 . . 50 1255 100.0000 . . . . 0.110 . . . . . . . . . . . 0.141 'X-RAY DIFFRACTION' 2.371 2.534 . . 44 1195 100.0000 . . . . 0.123 . . . . . . . . . . . 0.196 'X-RAY DIFFRACTION' 2.534 2.737 . . 42 1129 100.0000 . . . . 0.128 . . . . . . . . . . . 0.126 'X-RAY DIFFRACTION' 2.737 2.997 . . 30 1031 100.0000 . . . . 0.149 . . . . . . . . . . . 0.163 'X-RAY DIFFRACTION' 2.997 3.349 . . 35 934 100.0000 . . . . 0.124 . . . . . . . . . . . 0.170 'X-RAY DIFFRACTION' 3.349 3.865 . . 22 853 100.0000 . . . . 0.128 . . . . . . . . . . . 0.142 'X-RAY DIFFRACTION' 3.865 4.726 . . 27 730 100.0000 . . . . 0.139 . . . . . . . . . . . 0.180 'X-RAY DIFFRACTION' 4.726 6.655 . . 17 581 100.0000 . . . . 0.154 . . . . . . . . . . . 0.173 'X-RAY DIFFRACTION' 6.655 47.299 . . 14 359 99.7326 . . . . 0.165 . . . . . . . . . . . 0.349 # _struct.entry_id 9I9W _struct.title 'Crystal structure containing UGGAA/UGGAA motif interacting with NCD molecule' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9I9W _struct_keywords.text 'RNA, UGGAA motif, SCA31, NCD molecule' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9I9W _struct_ref.pdbx_db_accession 9I9W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9I9W AAA 1 ? 14 ? 9I9W 1 ? 14 ? 1 14 2 1 9I9W BBB 1 ? 14 ? 9I9W 1 ? 14 ? 1 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1630 ? 1 MORE -8 ? 1 'SSA (A^2)' 6490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 14 N3 ? ? AAA G 2 BBB C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 14 O2 ? ? AAA G 2 BBB C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 14 N4 ? ? AAA G 2 BBB C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 13 N1 ? ? AAA C 3 BBB G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 13 O6 ? ? AAA C 3 BBB G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 13 N2 ? ? AAA C 3 BBB G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 12 N3 ? ? AAA A 4 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 12 O4 ? ? AAA A 4 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 11 N1 ? ? AAA C 5 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 11 O6 ? ? AAA C 5 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 11 N2 ? ? AAA C 5 BBB G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 10 N1 ? ? AAA U 6 BBB A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 10 N6 ? ? AAA U 6 BBB A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 6 N3 A ? AAA A 10 BBB U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 6 N3 B ? AAA A 10 BBB U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 6 O4 A ? AAA A 10 BBB U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 6 O4 B ? AAA A 10 BBB U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 5 N3 ? ? AAA G 11 BBB C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 5 O2 ? ? AAA G 11 BBB C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 5 N4 ? ? AAA G 11 BBB C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 4 N1 ? ? AAA U 12 BBB A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 4 N6 ? ? AAA U 12 BBB A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 3 N3 ? ? AAA G 13 BBB C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 3 O2 ? ? AAA G 13 BBB C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 3 N4 ? ? AAA G 13 BBB C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N3 A ? ? 1_555 B G 2 N1 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N3 B ? ? 1_555 B G 2 N1 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N4 A ? ? 1_555 B G 2 O6 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N4 B ? ? 1_555 B G 2 O6 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 O2 A ? ? 1_555 B G 2 N2 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 B ? ? 1_555 B G 2 N2 ? ? AAA C 14 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9I9W _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id AAA _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 282 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? AAA HOH 310 ? 7.37 . 2 1 O ? AAA HOH 311 ? 8.37 . 3 1 O ? AAA HOH 312 ? 9.10 . 4 1 O ? BBB HOH 285 ? 6.49 . 5 1 O ? BBB HOH 286 ? 7.69 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 B2R C6 C Y N 38 B2R N1 N Y N 39 B2R C2 C Y N 40 B2R C5 C Y N 41 B2R C4 C Y N 42 B2R C3 C Y N 43 B2R C9 C Y N 44 B2R C7 C Y N 45 B2R C11 C N N 46 B2R N8 N Y N 47 B2R C10 C Y N 48 B2R N23 N N N 49 B2R C24 C N N 50 B2R O36 O N N 51 B2R O25 O N N 52 B2R C26 C N N 53 B2R C27 C N N 54 B2R C28 C N N 55 B2R N35 N N N 56 B2R C34 C N N 57 B2R C33 C N N 58 B2R C32 C N N 59 B2R O31 O N N 60 B2R C30 C N N 61 B2R O37 O N N 62 B2R N29 N N N 63 B2R C13 C Y N 64 B2R C14 C Y N 65 B2R C15 C Y N 66 B2R C20 C Y N 67 B2R C16 C Y N 68 B2R C17 C Y N 69 B2R C18 C Y N 70 B2R C22 C N N 71 B2R N19 N Y N 72 B2R C21 C Y N 73 B2R N12 N Y N 74 B2R H1 H N N 75 B2R H2 H N N 76 B2R H3 H N N 77 B2R H4 H N N 78 B2R H5 H N N 79 B2R H6 H N N 80 B2R H7 H N N 81 B2R H8 H N N 82 B2R H9 H N N 83 B2R H10 H N N 84 B2R H11 H N N 85 B2R H12 H N N 86 B2R H13 H N N 87 B2R H14 H N N 88 B2R H30 H N N 89 B2R H16 H N N 90 B2R H17 H N N 91 B2R H18 H N N 92 B2R H19 H N N 93 B2R H20 H N N 94 B2R H21 H N N 95 B2R H22 H N N 96 B2R H23 H N N 97 B2R H24 H N N 98 B2R H25 H N N 99 B2R H26 H N N 100 B2R H27 H N N 101 B2R H28 H N N 102 B2R H29 H N N 103 C OP3 O N N 104 C P P N N 105 C OP1 O N N 106 C OP2 O N N 107 C "O5'" O N N 108 C "C5'" C N N 109 C "C4'" C N R 110 C "O4'" O N N 111 C "C3'" C N S 112 C "O3'" O N N 113 C "C2'" C N R 114 C "O2'" O N N 115 C "C1'" C N R 116 C N1 N N N 117 C C2 C N N 118 C O2 O N N 119 C N3 N N N 120 C C4 C N N 121 C N4 N N N 122 C C5 C N N 123 C C6 C N N 124 C HOP3 H N N 125 C HOP2 H N N 126 C "H5'" H N N 127 C "H5''" H N N 128 C "H4'" H N N 129 C "H3'" H N N 130 C "HO3'" H N N 131 C "H2'" H N N 132 C "HO2'" H N N 133 C "H1'" H N N 134 C H41 H N N 135 C H42 H N N 136 C H5 H N N 137 C H6 H N N 138 G OP3 O N N 139 G P P N N 140 G OP1 O N N 141 G OP2 O N N 142 G "O5'" O N N 143 G "C5'" C N N 144 G "C4'" C N R 145 G "O4'" O N N 146 G "C3'" C N S 147 G "O3'" O N N 148 G "C2'" C N R 149 G "O2'" O N N 150 G "C1'" C N R 151 G N9 N Y N 152 G C8 C Y N 153 G N7 N Y N 154 G C5 C Y N 155 G C6 C N N 156 G O6 O N N 157 G N1 N N N 158 G C2 C N N 159 G N2 N N N 160 G N3 N N N 161 G C4 C Y N 162 G HOP3 H N N 163 G HOP2 H N N 164 G "H5'" H N N 165 G "H5''" H N N 166 G "H4'" H N N 167 G "H3'" H N N 168 G "HO3'" H N N 169 G "H2'" H N N 170 G "HO2'" H N N 171 G "H1'" H N N 172 G H8 H N N 173 G H1 H N N 174 G H21 H N N 175 G H22 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 U OP3 O N N 180 U P P N N 181 U OP1 O N N 182 U OP2 O N N 183 U "O5'" O N N 184 U "C5'" C N N 185 U "C4'" C N R 186 U "O4'" O N N 187 U "C3'" C N S 188 U "O3'" O N N 189 U "C2'" C N R 190 U "O2'" O N N 191 U "C1'" C N R 192 U N1 N N N 193 U C2 C N N 194 U O2 O N N 195 U N3 N N N 196 U C4 C N N 197 U O4 O N N 198 U C5 C N N 199 U C6 C N N 200 U HOP3 H N N 201 U HOP2 H N N 202 U "H5'" H N N 203 U "H5''" H N N 204 U "H4'" H N N 205 U "H3'" H N N 206 U "HO3'" H N N 207 U "H2'" H N N 208 U "HO2'" H N N 209 U "H1'" H N N 210 U H3 H N N 211 U H5 H N N 212 U H6 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 B2R O37 C30 doub N N 40 B2R C33 C34 sing N N 41 B2R C33 C32 sing N N 42 B2R N35 C34 sing N N 43 B2R N35 C28 sing N N 44 B2R C30 O31 sing N N 45 B2R C30 N29 sing N N 46 B2R O31 C32 sing N N 47 B2R C14 C15 doub Y N 48 B2R C14 C13 sing Y N 49 B2R C15 C20 sing Y N 50 B2R C27 C28 sing N N 51 B2R C27 C26 sing N N 52 B2R N29 C13 sing N N 53 B2R C13 N12 doub Y N 54 B2R C20 C16 doub Y N 55 B2R C20 C21 sing Y N 56 B2R N12 C21 sing Y N 57 B2R C26 O25 sing N N 58 B2R C16 C17 sing Y N 59 B2R C21 N19 doub Y N 60 B2R O25 C24 sing N N 61 B2R C17 C18 doub Y N 62 B2R N19 C18 sing Y N 63 B2R C24 O36 doub N N 64 B2R C24 N23 sing N N 65 B2R C18 C22 sing N N 66 B2R N23 C2 sing N N 67 B2R C2 C3 doub Y N 68 B2R C2 N1 sing Y N 69 B2R C3 C4 sing Y N 70 B2R N1 C10 doub Y N 71 B2R C10 N8 sing Y N 72 B2R C10 C9 sing Y N 73 B2R C4 C9 doub Y N 74 B2R N8 C7 doub Y N 75 B2R C9 C5 sing Y N 76 B2R C7 C6 sing Y N 77 B2R C7 C11 sing N N 78 B2R C5 C6 doub Y N 79 B2R C6 H1 sing N N 80 B2R C5 H2 sing N N 81 B2R C4 H3 sing N N 82 B2R C3 H4 sing N N 83 B2R C11 H5 sing N N 84 B2R C11 H6 sing N N 85 B2R C11 H7 sing N N 86 B2R N23 H8 sing N N 87 B2R C26 H9 sing N N 88 B2R C26 H10 sing N N 89 B2R C27 H11 sing N N 90 B2R C27 H12 sing N N 91 B2R C28 H13 sing N N 92 B2R C28 H14 sing N N 93 B2R N35 H30 sing N N 94 B2R C34 H16 sing N N 95 B2R C34 H17 sing N N 96 B2R C33 H18 sing N N 97 B2R C33 H19 sing N N 98 B2R C32 H20 sing N N 99 B2R C32 H21 sing N N 100 B2R N29 H22 sing N N 101 B2R C14 H23 sing N N 102 B2R C15 H24 sing N N 103 B2R C16 H25 sing N N 104 B2R C17 H26 sing N N 105 B2R C22 H27 sing N N 106 B2R C22 H28 sing N N 107 B2R C22 H29 sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 U OP3 P sing N N 187 U OP3 HOP3 sing N N 188 U P OP1 doub N N 189 U P OP2 sing N N 190 U P "O5'" sing N N 191 U OP2 HOP2 sing N N 192 U "O5'" "C5'" sing N N 193 U "C5'" "C4'" sing N N 194 U "C5'" "H5'" sing N N 195 U "C5'" "H5''" sing N N 196 U "C4'" "O4'" sing N N 197 U "C4'" "C3'" sing N N 198 U "C4'" "H4'" sing N N 199 U "O4'" "C1'" sing N N 200 U "C3'" "O3'" sing N N 201 U "C3'" "C2'" sing N N 202 U "C3'" "H3'" sing N N 203 U "O3'" "HO3'" sing N N 204 U "C2'" "O2'" sing N N 205 U "C2'" "C1'" sing N N 206 U "C2'" "H2'" sing N N 207 U "O2'" "HO2'" sing N N 208 U "C1'" N1 sing N N 209 U "C1'" "H1'" sing N N 210 U N1 C2 sing N N 211 U N1 C6 sing N N 212 U C2 O2 doub N N 213 U C2 N3 sing N N 214 U N3 C4 sing N N 215 U N3 H3 sing N N 216 U C4 O4 doub N N 217 U C4 C5 sing N N 218 U C5 C6 doub N N 219 U C5 H5 sing N N 220 U C6 H6 sing N N 221 # _ndb_struct_conf_na.entry_id 9I9W _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 14 1_555 -0.233 -0.113 0.026 -5.957 -8.682 -0.989 1 AAA_G2:C14_BBB AAA 2 ? BBB 14 ? 19 1 1 A C 3 1_555 B G 13 1_555 0.179 -0.162 0.060 1.725 -13.107 -1.457 2 AAA_C3:G13_BBB AAA 3 ? BBB 13 ? 19 1 1 A A 4 1_555 B U 12 1_555 0.034 -0.093 0.084 0.425 -12.100 1.789 3 AAA_A4:U12_BBB AAA 4 ? BBB 12 ? 20 1 1 A C 5 1_555 B G 11 1_555 0.254 -0.143 0.107 0.925 -18.753 1.239 4 AAA_C5:G11_BBB AAA 5 ? BBB 11 ? 19 1 1 A U 6 1_555 B A 10 1_555 -0.032 -0.080 0.195 -2.754 -4.294 -0.413 5 AAA_U6:A10_BBB AAA 6 ? BBB 10 ? 20 1 1 A A 10 1_555 B U 6 1_555 -0.308 -0.001 0.090 0.432 -3.670 1.141 6 AAA_A10:U6_BBB AAA 10 ? BBB 6 ? 20 1 1 A G 11 1_555 B C 5 1_555 -0.267 -0.156 -0.030 -0.132 -15.358 2.025 7 AAA_G11:C5_BBB AAA 11 ? BBB 5 ? 19 1 1 A U 12 1_555 B A 4 1_555 -0.015 -0.121 -0.010 -1.765 -14.273 5.036 8 AAA_U12:A4_BBB AAA 12 ? BBB 4 ? 20 1 1 A G 13 1_555 B C 3 1_555 -0.147 -0.147 -0.064 -5.043 -10.205 -0.237 9 AAA_G13:C3_BBB AAA 13 ? BBB 3 ? 19 1 1 A C 14 1_555 B G 2 1_555 0.054 -0.167 -0.108 1.489 -5.217 -0.651 10 AAA_C14:G2_BBB AAA 14 ? BBB 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 14 1_555 A C 3 1_555 B G 13 1_555 -0.741 -1.348 3.115 -1.602 0.033 35.164 -2.233 0.997 3.144 0.055 2.649 35.199 1 AAAAAA_G2C3:G13C14_BBBBBB AAA 2 ? BBB 14 ? AAA 3 ? BBB 13 ? 1 A C 3 1_555 B G 13 1_555 A A 4 1_555 B U 12 1_555 0.495 -1.461 3.195 0.465 8.472 30.171 -4.176 -0.837 2.702 15.885 -0.872 31.315 2 AAAAAA_C3A4:U12G13_BBBBBB AAA 3 ? BBB 13 ? AAA 4 ? BBB 12 ? 1 A A 4 1_555 B U 12 1_555 A C 5 1_555 B G 11 1_555 0.056 -1.365 3.234 0.976 4.439 33.676 -3.019 0.054 3.035 7.619 -1.675 33.973 3 AAAAAA_A4C5:G11U12_BBBBBB AAA 4 ? BBB 12 ? AAA 5 ? BBB 11 ? 1 A C 5 1_555 B G 11 1_555 A U 6 1_555 B A 10 1_555 -0.054 -1.439 3.375 -0.441 4.456 33.854 -3.159 0.022 3.166 7.611 0.753 34.140 4 AAAAAA_C5U6:A10G11_BBBBBB AAA 5 ? BBB 11 ? AAA 6 ? BBB 10 ? 1 A A 10 1_555 B U 6 1_555 A G 11 1_555 B C 5 1_555 -0.397 -1.714 3.334 -1.370 5.884 31.893 -4.075 0.475 2.992 10.590 2.466 32.445 5 AAAAAA_A10G11:C5U6_BBBBBB AAA 10 ? BBB 6 ? AAA 11 ? BBB 5 ? 1 A G 11 1_555 B C 5 1_555 A U 12 1_555 B A 4 1_555 -0.009 -1.313 3.285 -0.950 6.469 32.838 -3.312 -0.136 2.979 11.303 1.659 33.465 6 AAAAAA_G11U12:A4C5_BBBBBB AAA 11 ? BBB 5 ? AAA 12 ? BBB 4 ? 1 A U 12 1_555 B A 4 1_555 A G 13 1_555 B C 3 1_555 -0.195 -1.581 3.312 0.229 10.796 29.996 -4.720 0.394 2.600 20.059 -0.425 31.838 7 AAAAAA_U12G13:C3A4_BBBBBB AAA 12 ? BBB 4 ? AAA 13 ? BBB 3 ? 1 A G 13 1_555 B C 3 1_555 A C 14 1_555 B G 2 1_555 0.822 -2.308 3.079 1.819 4.956 25.388 -6.357 -1.389 2.639 11.123 -4.082 25.923 8 AAAAAA_G13C14:G2C3_BBBBBB AAA 13 ? BBB 3 ? AAA 14 ? BBB 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Polish National Science Centre' Poland UMO-2022/45/B/NZ7/03543 1 'Polish National Science Centre' Poland 2017/26/E/NZ1/00950 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GLP _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9I9W _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.013961 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013961 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015904 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 # loop_ # loop_ #