HEADER TRANSFERASE/DNA 15-DEC-95 9ICC TITLE DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'- TITLE 2 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 4 02-AUG-23 9ICC 1 REMARK LINK REVDAT 3 24-FEB-09 9ICC 1 VERSN REVDAT 2 01-APR-03 9ICC 1 JRNL REVDAT 1 15-DEC-95 9ICC 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA JRNL TITL CHARACTERIZATION OF THE METAL ION BINDING JRNL TITL 2 HELIX-HAIRPIN-HELIX MOTIFS IN HUMAN DNA POLYMERASE BETA BY JRNL TITL 3 X-RAY STRUCTURAL ANALYSIS. JRNL REF BIOCHEMISTRY V. 35 12778 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841120 JRNL DOI 10.1021/BI960790I REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE REMARK 1 TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA REMARK 1 REF BIOCHEMISTRY V. 35 12762 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 8833 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1580 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 289 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.019 ; 0.020 ; 3017 REMARK 3 BOND ANGLES (DEGREES) : 3.100 ; 3.000 ; 4079 REMARK 3 TORSION ANGLES (DEGREES) : 19.000; NULL ; 1805 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.016 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.006 ; 0.020 ; 395 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.100 ; 6.000 ; 3017 REMARK 3 NON-BONDED CONTACTS (A) : 0.022 ; 0.020 ; 211 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ICC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000180041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8833 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 6.50000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 17.9000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 8ICB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DATP, REMARK 280 1 MILLIMOLAR CRCL3, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.65000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.80150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.80150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 REMARK 400 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 REMARK 400 AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA T 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA T 8 C2 N3 C4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 ASP A 246 REMARK 475 GLU A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 1 O3' DC T 1 C3' 0.092 REMARK 500 DT T 3 O3' DT T 3 C3' -0.046 REMARK 500 DA T 5 O4' DA T 5 C4' -0.061 REMARK 500 DG T 6 O3' DG T 6 C3' -0.087 REMARK 500 DA T 7 O3' DA T 7 C3' -0.039 REMARK 500 DT P 1 O3' DT P 1 C3' -0.086 REMARK 500 DC P 2 C1' DC P 2 N1 0.138 REMARK 500 DT P 3 N1 DT P 3 C2 0.067 REMARK 500 DA P 5 O3' DA P 5 C3' -0.049 REMARK 500 GLU A 26 CD GLU A 26 OE1 0.089 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.068 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.082 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.074 REMARK 500 GLU A 123 CD GLU A 123 OE1 0.067 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.080 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.067 REMARK 500 GLU A 153 CD GLU A 153 OE2 0.076 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.078 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.082 REMARK 500 GLU A 203 CD GLU A 203 OE1 0.095 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.091 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.082 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.072 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.077 REMARK 500 GLU A 309 CD GLU A 309 OE2 0.072 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.082 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 O4' - C1' - C2' ANGL. DEV. = 3.6 DEGREES REMARK 500 DC T 1 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC T 1 C6 - N1 - C1' ANGL. DEV. = -10.1 DEGREES REMARK 500 DC T 1 C2 - N1 - C1' ANGL. DEV. = 10.1 DEGREES REMARK 500 DC T 1 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DA T 2 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA T 2 C8 - N9 - C1' ANGL. DEV. = 11.6 DEGREES REMARK 500 DT T 3 P - O5' - C5' ANGL. DEV. = 13.3 DEGREES REMARK 500 DT T 3 N1 - C1' - C2' ANGL. DEV. = 10.3 DEGREES REMARK 500 DT T 3 O4' - C1' - N1 ANGL. DEV. = 6.8 DEGREES REMARK 500 DT T 4 C5' - C4' - O4' ANGL. DEV. = 7.1 DEGREES REMARK 500 DT T 4 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -32.0 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 31.0 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG T 6 C8 - N9 - C1' ANGL. DEV. = 12.5 DEGREES REMARK 500 DG T 6 C4 - N9 - C1' ANGL. DEV. = -13.1 DEGREES REMARK 500 DA T 7 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DA T 7 C8 - N9 - C1' ANGL. DEV. = 35.2 DEGREES REMARK 500 DA T 7 C4 - N9 - C1' ANGL. DEV. = -36.7 DEGREES REMARK 500 DT P 1 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT P 1 C6 - N1 - C1' ANGL. DEV. = -22.8 DEGREES REMARK 500 DT P 1 C2 - N1 - C1' ANGL. DEV. = 21.4 DEGREES REMARK 500 DT P 1 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 DC P 2 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC P 2 C6 - N1 - C1' ANGL. DEV. = -18.6 DEGREES REMARK 500 DC P 2 C2 - N1 - C1' ANGL. DEV. = 20.6 DEGREES REMARK 500 DT P 3 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DT P 3 N3 - C2 - O2 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT P 3 C6 - N1 - C1' ANGL. DEV. = -10.7 DEGREES REMARK 500 DT P 3 C2 - N1 - C1' ANGL. DEV. = 12.2 DEGREES REMARK 500 DA P 5 C8 - N9 - C1' ANGL. DEV. = -22.2 DEGREES REMARK 500 DA P 5 C4 - N9 - C1' ANGL. DEV. = 22.5 DEGREES REMARK 500 DT P 6 C6 - N1 - C1' ANGL. DEV. = -25.4 DEGREES REMARK 500 DT P 6 C2 - N1 - C1' ANGL. DEV. = 25.9 DEGREES REMARK 500 DG P 7 C8 - N9 - C1' ANGL. DEV. = 36.2 DEGREES REMARK 500 DG P 7 C4 - N9 - C1' ANGL. DEV. = -34.9 DEGREES REMARK 500 MET A 18 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR A 36 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 39 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 83 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 91 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 78 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -18.23 -155.38 REMARK 500 ASN A 28 -77.17 -99.21 REMARK 500 GLN A 31 50.50 -99.73 REMARK 500 ALA A 32 61.40 -105.50 REMARK 500 ASP A 91 96.23 -35.89 REMARK 500 ASN A 128 50.07 -117.88 REMARK 500 ALA A 185 108.59 6.74 REMARK 500 SER A 199 7.29 -60.80 REMARK 500 SER A 202 -61.49 -14.74 REMARK 500 GLU A 203 -70.93 -85.65 REMARK 500 SER A 204 83.55 -24.74 REMARK 500 THR A 205 76.19 -33.01 REMARK 500 LYS A 206 -175.42 36.44 REMARK 500 GLN A 207 59.53 -175.72 REMARK 500 PRO A 208 -52.52 -28.67 REMARK 500 HIS A 222 38.03 73.87 REMARK 500 SER A 229 111.57 -178.40 REMARK 500 THR A 233 -19.47 -143.77 REMARK 500 LYS A 244 -121.15 -33.13 REMARK 500 ASP A 246 132.52 13.92 REMARK 500 GLU A 247 -30.02 137.68 REMARK 500 LYS A 262 -19.47 -49.55 REMARK 500 GLN A 264 20.69 -156.37 REMARK 500 TYR A 265 -76.60 -55.75 REMARK 500 TYR A 266 -59.89 -22.99 REMARK 500 SER A 275 -165.15 -75.52 REMARK 500 LYS A 289 21.70 -60.85 REMARK 500 GLU A 295 -17.91 -20.95 REMARK 500 TYR A 296 -4.90 -141.44 REMARK 500 THR A 304 5.55 -62.89 REMARK 500 ALA A 307 156.83 168.09 REMARK 500 GLU A 309 76.88 70.55 REMARK 500 PRO A 310 99.68 -44.24 REMARK 500 LYS A 317 -71.43 -61.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DTP A 338 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT P 6 OP2 REMARK 620 2 DT P 6 OP1 49.7 REMARK 620 3 THR A 101 O 135.3 149.8 REMARK 620 4 VAL A 103 O 124.6 78.6 79.7 REMARK 620 5 ILE A 106 O 63.4 65.7 89.8 79.4 REMARK 620 6 HOH A 601 O 124.4 112.0 88.5 89.4 168.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 342 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 72.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CR A 339 CR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 192 OD1 143.4 REMARK 620 3 DTP A 338 O3B 81.6 111.2 REMARK 620 4 HOH A 662 O 91.5 94.4 145.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CR A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 9ICC A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 9ICC T 1 8 PDB 9ICC 9ICC 1 8 DBREF 9ICC P 1 7 PDB 9ICC 9ICC 1 7 SEQRES 1 T 8 DC DA DT DT DA DG DA DA SEQRES 1 P 7 DT DC DT DA DA DT DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET NA A 341 1 HET NA A 342 1 HET CR A 339 1 HET DTP A 338 20 HETNAM NA SODIUM ION HETNAM CR CHROMIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE FORMUL 4 NA 2(NA 1+) FORMUL 6 CR CR 3+ FORMUL 7 DTP C10 H16 N5 O12 P3 FORMUL 8 HOH *141(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP2 DT P 6 NA NA A 341 1555 1555 3.39 LINK OP1 DT P 6 NA NA A 341 1555 1555 2.40 LINK O LYS A 60 NA NA A 342 1555 1555 2.44 LINK O LEU A 62 NA NA A 342 1555 1555 2.38 LINK O THR A 101 NA NA A 341 1555 1555 2.28 LINK O VAL A 103 NA NA A 341 1555 1555 2.61 LINK O ILE A 106 NA NA A 341 1555 1555 2.41 LINK OD1 ASP A 190 CR CR A 339 1555 1555 2.42 LINK OD1 ASP A 192 CR CR A 339 1555 1555 2.10 LINK O3B DTP A 338 CR CR A 339 1555 1555 2.37 LINK CR CR A 339 O HOH A 662 1555 1555 1.97 LINK NA NA A 341 O HOH A 601 1555 1555 2.05 CISPEP 1 GLY A 274 SER A 275 0 0.21 SITE 1 AC1 5 THR A 101 VAL A 103 ILE A 106 HOH A 601 SITE 2 AC1 5 DT P 6 SITE 1 AC2 3 LYS A 60 LEU A 62 VAL A 65 SITE 1 AC3 4 ASP A 190 ASP A 192 DTP A 338 HOH A 662 SITE 1 AC4 15 SER A 180 SER A 188 GLY A 189 ASP A 190 SITE 2 AC4 15 ASP A 192 TYR A 271 PHE A 272 GLY A 274 SITE 3 AC4 15 ASP A 276 CR A 339 HOH A 502 HOH A 654 SITE 4 AC4 15 HOH A 660 HOH A 662 DG P 7 CRYST1 179.300 57.603 48.013 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020828 0.00000 TER 146 DA T 8 TER 291 DG P 7 TER 2915 GLU A 335 HETATM 2916 NA NA A 341 60.349 30.632 58.550 1.00 12.14 NA HETATM 2917 NA NA A 342 47.185 62.447 51.560 1.00 35.71 NA HETATM 2918 CR CR A 339 72.209 33.026 50.598 0.83 30.00 CR HETATM 2919 PG DTP A 338 74.666 35.192 52.094 0.50 36.95 P HETATM 2920 O1G DTP A 338 74.958 36.558 51.622 0.50 30.54 O HETATM 2921 O2G DTP A 338 74.810 34.905 53.530 0.50 39.11 O HETATM 2922 O3G DTP A 338 75.444 34.118 51.201 0.50 45.78 O HETATM 2923 PB DTP A 338 72.075 35.709 51.252 0.50 40.87 P HETATM 2924 O1B DTP A 338 70.861 34.979 51.537 0.50 36.37 O HETATM 2925 O2B DTP A 338 72.096 37.086 51.676 0.50 45.50 O HETATM 2926 O3B DTP A 338 73.242 34.844 51.707 0.50 32.59 O HETATM 2927 PA DTP A 338 70.859 35.529 48.994 0.50 61.39 P HETATM 2928 O1A DTP A 338 70.159 34.239 48.899 0.50 65.54 O HETATM 2929 O2A DTP A 338 70.134 36.662 49.647 0.50 60.94 O HETATM 2930 O3A DTP A 338 72.169 35.419 49.726 0.50 47.52 O HETATM 2931 O5' DTP A 338 71.537 35.882 47.627 0.50 67.45 O HETATM 2932 C5' DTP A 338 70.704 35.915 46.563 0.50 77.66 C HETATM 2933 C4' DTP A 338 71.035 37.007 45.609 0.50 81.08 C HETATM 2934 O4' DTP A 338 69.905 37.331 44.801 0.50 85.52 O HETATM 2935 C3' DTP A 338 71.395 38.315 46.273 0.50 76.44 C HETATM 2936 O3' DTP A 338 72.101 39.074 45.317 0.50 69.60 O HETATM 2937 C2' DTP A 338 70.027 38.947 46.542 0.50 81.19 C HETATM 2938 C1' DTP A 338 69.213 38.421 45.345 0.50 84.28 C HETATM 2939 O HOH T 517 58.969 14.356 51.637 1.00 47.90 O HETATM 2940 O HOH T 526 53.676 30.827 42.890 1.00 20.75 O HETATM 2941 O HOH T 527 59.994 24.017 48.215 1.00 59.79 O HETATM 2942 O HOH T 535 63.627 29.997 42.388 1.00 27.37 O HETATM 2943 O HOH T 537 61.903 26.146 35.926 1.00 70.11 O HETATM 2944 O HOH T 545 61.158 15.849 42.149 1.00 91.88 O HETATM 2945 O HOH T 546 60.933 16.073 47.487 1.00 92.15 O HETATM 2946 O HOH T 547 54.202 15.699 55.195 1.00 19.75 O HETATM 2947 O HOH T 564 56.296 23.270 50.538 1.00 57.73 O HETATM 2948 O HOH T 594 61.233 26.054 47.647 1.00 70.01 O HETATM 2949 O HOH T 596 59.109 19.274 52.399 1.00 30.05 O HETATM 2950 O HOH T 634 45.728 20.174 50.025 1.00 98.24 O HETATM 2951 O HOH T 651 48.343 21.319 50.968 1.00 79.13 O HETATM 2952 O HOH T 652 52.376 18.818 43.942 1.00 40.51 O HETATM 2953 O HOH P 510 53.358 31.851 53.414 1.00 49.96 O HETATM 2954 O HOH P 511 50.168 24.249 50.638 1.00 70.97 O HETATM 2955 O HOH P 524 48.261 21.509 33.220 1.00 62.55 O HETATM 2956 O HOH P 525 52.512 27.550 41.261 1.00 61.47 O HETATM 2957 O HOH P 534 66.078 31.235 55.806 1.00 87.18 O HETATM 2958 O HOH P 565 59.379 26.363 51.471 1.00 34.98 O HETATM 2959 O HOH P 566 64.194 33.933 55.308 1.00 72.20 O HETATM 2960 O HOH P 567 60.592 32.130 53.471 1.00 75.82 O HETATM 2961 O HOH P 568 51.765 24.675 55.546 1.00 41.14 O HETATM 2962 O HOH P 569 46.846 27.036 52.003 1.00 22.14 O HETATM 2963 O HOH P 570 45.810 31.471 43.082 1.00 52.56 O HETATM 2964 O HOH P 595 54.215 24.550 51.885 1.00 40.30 O HETATM 2965 O HOH P 599 48.422 28.584 40.844 1.00 50.97 O HETATM 2966 O HOH P 613 46.786 33.771 52.567 1.00 20.72 O HETATM 2967 O HOH P 614 46.520 28.871 54.041 1.00 65.15 O HETATM 2968 O HOH P 615 43.162 31.173 47.792 1.00 51.38 O HETATM 2969 O HOH P 635 44.803 24.315 47.031 1.00 90.14 O HETATM 2970 O HOH P 648 56.709 32.668 53.891 1.00 40.79 O HETATM 2971 O HOH P 657 60.087 39.555 50.554 1.00 39.58 O HETATM 2972 O HOH A 501 85.348 39.958 27.679 1.00 44.20 O HETATM 2973 O HOH A 502 77.050 32.353 50.496 1.00 8.36 O HETATM 2974 O HOH A 503 74.434 28.890 59.894 1.00 5.27 O HETATM 2975 O HOH A 505 66.085 32.167 61.436 1.00 21.33 O HETATM 2976 O HOH A 506 53.590 48.933 48.151 1.00 53.41 O HETATM 2977 O HOH A 507 87.252 39.603 52.268 1.00 19.64 O HETATM 2978 O HOH A 508 75.083 35.464 32.114 1.00 18.33 O HETATM 2979 O HOH A 509 66.286 12.426 52.261 1.00 38.90 O HETATM 2980 O HOH A 512 57.899 21.319 51.914 1.00 17.27 O HETATM 2981 O HOH A 513 60.271 22.192 50.925 1.00 26.97 O HETATM 2982 O HOH A 514 66.404 28.766 61.622 1.00 12.42 O HETATM 2983 O HOH A 515 60.041 12.968 57.893 1.00 49.91 O HETATM 2984 O HOH A 516 63.506 12.018 57.494 1.00 78.31 O HETATM 2985 O HOH A 518 74.862 15.316 61.091 1.00 82.72 O HETATM 2986 O HOH A 519 69.783 12.299 52.555 1.00 44.28 O HETATM 2987 O HOH A 520 78.189 14.757 58.613 1.00 15.90 O HETATM 2988 O HOH A 521 80.685 25.187 58.885 1.00 20.39 O HETATM 2989 O HOH A 523 72.426 31.648 58.878 1.00 27.87 O HETATM 2990 O HOH A 528 72.645 42.292 51.473 1.00 38.61 O HETATM 2991 O HOH A 529 75.029 42.418 53.934 1.00 73.97 O HETATM 2992 O HOH A 530 81.931 35.935 52.925 1.00 22.27 O HETATM 2993 O HOH A 531 73.855 33.708 24.302 1.00 25.17 O HETATM 2994 O HOH A 533 73.253 28.728 57.482 1.00 11.91 O HETATM 2995 O HOH A 536 73.496 35.522 29.565 1.00 37.28 O HETATM 2996 O HOH A 538 67.077 26.863 38.553 1.00 52.68 O HETATM 2997 O HOH A 539 56.307 24.144 54.341 1.00 2.23 O HETATM 2998 O HOH A 541 70.541 12.215 41.624 1.00 41.85 O HETATM 2999 O HOH A 542 73.520 12.264 52.818 1.00 46.85 O HETATM 3000 O HOH A 543 71.633 13.585 59.048 1.00 19.59 O HETATM 3001 O HOH A 544 67.570 13.215 55.689 1.00 36.20 O HETATM 3002 O HOH A 550 78.018 15.568 32.530 1.00 89.31 O HETATM 3003 O HOH A 551 82.541 16.172 29.900 1.00 42.07 O HETATM 3004 O HOH A 552 86.889 16.139 35.548 1.00 80.08 O HETATM 3005 O HOH A 553 61.581 60.736 62.326 1.00 55.48 O HETATM 3006 O HOH A 555 72.853 45.733 37.288 1.00100.00 O HETATM 3007 O HOH A 556 48.921 49.582 49.557 1.00 45.13 O HETATM 3008 O HOH A 557 72.299 42.497 36.941 1.00 28.41 O HETATM 3009 O HOH A 558 44.688 35.968 61.699 1.00 82.41 O HETATM 3010 O HOH A 560 44.309 44.049 62.111 1.00 55.92 O HETATM 3011 O HOH A 561 44.710 40.749 64.738 1.00 55.49 O HETATM 3012 O HOH A 562 56.180 45.053 66.883 1.00 43.42 O HETATM 3013 O HOH A 563 57.385 38.240 69.742 1.00 77.28 O HETATM 3014 O HOH A 571 39.631 51.675 58.096 1.00 38.33 O HETATM 3015 O HOH A 575 65.939 30.052 58.785 1.00 20.60 O HETATM 3016 O HOH A 576 84.001 34.344 42.499 1.00 98.60 O HETATM 3017 O HOH A 577 79.380 22.504 58.694 1.00 3.36 O HETATM 3018 O HOH A 578 72.092 38.621 27.463 1.00 24.52 O HETATM 3019 O HOH A 579 69.770 34.239 26.016 1.00 69.50 O HETATM 3020 O HOH A 580 64.585 42.994 31.122 1.00 75.13 O HETATM 3021 O HOH A 581 65.151 45.072 33.742 1.00 59.35 O HETATM 3022 O HOH A 582 62.198 43.712 34.117 1.00 99.85 O HETATM 3023 O HOH A 583 79.389 53.081 31.944 1.00 48.24 O HETATM 3024 O HOH A 584 77.405 42.148 41.591 1.00 45.84 O HETATM 3025 O HOH A 585 65.297 30.483 39.045 1.00 46.49 O HETATM 3026 O HOH A 589 86.932 19.063 58.125 1.00 84.06 O HETATM 3027 O HOH A 590 69.304 23.057 66.966 1.00 81.77 O HETATM 3028 O HOH A 591 75.188 20.659 64.575 1.00 45.58 O HETATM 3029 O HOH A 592 71.332 39.388 36.292 1.00 11.97 O HETATM 3030 O HOH A 593 68.614 42.211 29.963 1.00 67.78 O HETATM 3031 O HOH A 597 51.968 19.530 58.384 1.00 43.93 O HETATM 3032 O HOH A 600 64.159 25.948 61.051 1.00 72.23 O HETATM 3033 O HOH A 601 62.284 31.021 59.120 1.00 62.90 O HETATM 3034 O HOH A 602 77.918 33.935 64.482 1.00 57.04 O HETATM 3035 O HOH A 603 44.295 28.223 71.825 1.00 44.98 O HETATM 3036 O HOH A 604 49.989 22.265 72.783 1.00 50.22 O HETATM 3037 O HOH A 606 63.113 59.896 64.518 1.00 34.71 O HETATM 3038 O HOH A 607 60.291 53.570 50.470 1.00100.00 O HETATM 3039 O HOH A 608 57.007 50.942 48.760 1.00 48.22 O HETATM 3040 O HOH A 610 61.182 41.824 22.247 1.00 97.49 O HETATM 3041 O HOH A 611 65.230 38.118 29.879 1.00 90.88 O HETATM 3042 O HOH A 612 49.615 32.818 54.743 1.00 62.78 O HETATM 3043 O HOH A 616 41.859 38.857 53.385 1.00 53.41 O HETATM 3044 O HOH A 617 62.852 26.727 45.094 1.00 37.07 O HETATM 3045 O HOH A 618 83.386 31.264 43.698 1.00 49.55 O HETATM 3046 O HOH A 620 77.956 30.064 62.874 1.00 73.76 O HETATM 3047 O HOH A 621 72.797 19.757 65.774 1.00 67.69 O HETATM 3048 O HOH A 622 63.143 17.440 63.349 1.00100.00 O HETATM 3049 O HOH A 623 62.682 24.923 74.585 1.00 94.59 O HETATM 3050 O HOH A 624 66.033 23.216 28.638 1.00 75.87 O HETATM 3051 O HOH A 625 71.595 20.253 29.491 1.00 79.93 O HETATM 3052 O HOH A 626 71.996 36.420 25.969 1.00 70.47 O HETATM 3053 O HOH A 627 84.063 38.111 25.979 1.00 62.52 O HETATM 3054 O HOH A 628 64.606 36.084 23.009 1.00 21.63 O HETATM 3055 O HOH A 629 69.103 32.540 36.887 1.00 97.59 O HETATM 3056 O HOH A 631 73.984 39.155 48.622 1.00100.00 O HETATM 3057 O HOH A 636 81.260 14.807 61.636 1.00100.00 O HETATM 3058 O HOH A 637 81.397 14.527 65.807 1.00 59.41 O HETATM 3059 O HOH A 638 47.536 37.781 75.289 1.00 77.28 O HETATM 3060 O HOH A 639 56.144 40.821 69.182 1.00 31.81 O HETATM 3061 O HOH A 640 60.798 37.450 66.953 1.00 83.25 O HETATM 3062 O HOH A 641 43.580 38.539 60.855 1.00 88.51 O HETATM 3063 O HOH A 642 60.542 63.505 62.415 1.00 34.82 O HETATM 3064 O HOH A 643 57.992 14.740 69.106 1.00 26.95 O HETATM 3065 O HOH A 644 75.396 10.376 37.380 1.00 78.73 O HETATM 3066 O HOH A 645 55.612 46.227 74.874 1.00 35.02 O HETATM 3067 O HOH A 646 49.922 15.729 70.460 1.00 89.54 O HETATM 3068 O HOH A 647 48.950 36.377 76.443 1.00 53.45 O HETATM 3069 O HOH A 649 47.253 54.082 68.874 1.00 54.76 O HETATM 3070 O HOH A 650 57.352 48.462 22.456 1.00 16.34 O HETATM 3071 O HOH A 653 66.397 35.214 42.403 1.00 45.14 O HETATM 3072 O HOH A 654 70.786 34.556 53.738 1.00 46.64 O HETATM 3073 O HOH A 655 69.536 30.133 54.262 1.00 55.63 O HETATM 3074 O HOH A 656 75.804 39.207 54.316 1.00 36.33 O HETATM 3075 O HOH A 658 64.014 43.860 40.419 1.00 52.03 O HETATM 3076 O HOH A 659 71.949 35.490 63.672 1.00 45.61 O HETATM 3077 O HOH A 660 73.851 38.645 51.433 1.00 87.94 O HETATM 3078 O HOH A 661 67.995 30.884 39.855 1.00 52.19 O HETATM 3079 O HOH A 662 70.498 32.259 49.980 1.00 67.06 O CONECT 250 2916 CONECT 251 2916 CONECT 688 2917 CONECT 706 2917 CONECT 1010 2916 CONECT 1028 2916 CONECT 1045 2916 CONECT 1724 2918 CONECT 1740 2918 CONECT 2916 250 251 1010 1028 CONECT 2916 1045 3033 CONECT 2917 688 706 CONECT 2918 1724 1740 2926 3079 CONECT 2919 2920 2921 2922 2926 CONECT 2920 2919 CONECT 2921 2919 CONECT 2922 2919 CONECT 2923 2924 2925 2926 2930 CONECT 2924 2923 CONECT 2925 2923 CONECT 2926 2918 2919 2923 CONECT 2927 2928 2929 2930 2931 CONECT 2928 2927 CONECT 2929 2927 CONECT 2930 2923 2927 CONECT 2931 2927 2932 CONECT 2932 2931 2933 CONECT 2933 2932 2934 2935 CONECT 2934 2933 2938 CONECT 2935 2933 2936 2937 CONECT 2936 2935 CONECT 2937 2935 2938 CONECT 2938 2934 2937 CONECT 3033 2916 CONECT 3079 2918 MASTER 827 0 4 16 7 0 8 6 3076 3 35 28 END