HEADER TRANSFERASE/DNA 04-JAN-96 9ICL TITLE DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE TITLE 2 OF PYROPHOSPHATE AND MNCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 3 02-AUG-23 9ICL 1 REMARK LINK REVDAT 2 24-FEB-09 9ICL 1 VERSN REVDAT 1 15-NOV-96 9ICL 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA JRNL TITL CHARACTERIZATION OF THE METAL ION BINDING JRNL TITL 2 HELIX-HAIRPIN-HELIX MOTIFS IN HUMAN DNA POLYMERASE BETA BY JRNL TITL 3 X-RAY STRUCTURAL ANALYSIS JRNL REF BIOCHEMISTRY V. 35 12778 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841120 JRNL DOI 10.1021/BI960790I REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 11843 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1630 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 248 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.019 ; 0.020 ; 2958 REMARK 3 BOND ANGLES (DEGREES) : 2.700 ; 3.000 ; 3994 REMARK 3 TORSION ANGLES (DEGREES) : 18.300; NULL ; 1776 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.013 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.005 ; 0.020 ; 393 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 5.700 ; 6.000 ; 2958 REMARK 3 NON-BONDED CONTACTS (A) : 0.024 ; 0.020 ; 148 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 438.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ICL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000180050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 6.00000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 20.7000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 9ICK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 6 BASE PAIRS OF DNA (SEE ENTRY 9ICW AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR REMARK 280 PYROPHOSPHATE (PPI), 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REMARK 280 REFERENCE 2 FOR DETAILS CONCERNING EXPERIMENTAL PROCEDURES, REMARK 280 RESULTS, AND DISCUSSIONS FOR THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.31700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.88150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.31700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.88150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 REMARK 400 5'-CATCTGTTGTAAGCGCCG-3' (18-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 REMARK 400 AND 5'-PO4-CAGATG-3' (6-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT T 8 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 8 C7 C6 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 ASP A 246 REMARK 475 GLU A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 83 CB GLU A 117 3558 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 5 O3' DC T 5 C3' -0.042 REMARK 500 DT T 6 O3' DT T 6 C3' -0.054 REMARK 500 DT T 6 C1' DT T 6 N1 -0.104 REMARK 500 DG T 7 O3' DG T 7 C3' -0.056 REMARK 500 DT P 5 O3' DT P 5 C3' -0.080 REMARK 500 DT P 5 C1' DT P 5 N1 0.239 REMARK 500 DT P 5 N1 DT P 5 C2 0.081 REMARK 500 DT P 5 C4 DT P 5 C5 0.056 REMARK 500 DG P 6 O3' DG P 6 C3' -0.052 REMARK 500 DG P 6 C5 DG P 6 C6 -0.068 REMARK 500 DG P 6 C5 DG P 6 N7 -0.038 REMARK 500 GLU A 21 CD GLU A 21 OE1 0.067 REMARK 500 GLU A 26 CD GLU A 26 OE1 0.068 REMARK 500 GLU A 58 CD GLU A 58 OE1 0.069 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.079 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.082 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.081 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.077 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.079 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.066 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.086 REMARK 500 GLU A 186 CD GLU A 186 OE1 0.072 REMARK 500 GLU A 203 CD GLU A 203 OE1 0.089 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.073 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.082 REMARK 500 GLU A 309 CD GLU A 309 OE2 0.074 REMARK 500 GLU A 316 CD GLU A 316 OE2 0.072 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.086 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 2 C6 - N1 - C1' ANGL. DEV. = -12.6 DEGREES REMARK 500 DC T 2 C2 - N1 - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 DT T 4 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -20.1 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 19.1 DEGREES REMARK 500 DC T 5 C6 - N1 - C1' ANGL. DEV. = -11.6 DEGREES REMARK 500 DC T 5 C2 - N1 - C1' ANGL. DEV. = 12.3 DEGREES REMARK 500 DC T 5 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT T 6 C6 - N1 - C2 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT T 6 C6 - N1 - C1' ANGL. DEV. = -9.5 DEGREES REMARK 500 DC P 1 C6 - N1 - C1' ANGL. DEV. = -11.4 DEGREES REMARK 500 DC P 1 C2 - N1 - C1' ANGL. DEV. = 10.4 DEGREES REMARK 500 DC P 1 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DA P 2 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA P 2 C4' - C3' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG P 3 P - O5' - C5' ANGL. DEV. = 10.7 DEGREES REMARK 500 DG P 3 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DA P 4 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DA P 4 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT P 5 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT P 5 O4' - C1' - N1 ANGL. DEV. = 8.6 DEGREES REMARK 500 DT P 5 N3 - C2 - O2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT P 5 C6 - C5 - C7 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT P 5 C6 - N1 - C1' ANGL. DEV. = -25.1 DEGREES REMARK 500 DT P 5 C2 - N1 - C1' ANGL. DEV. = 27.6 DEGREES REMARK 500 DG P 6 C8 - N9 - C1' ANGL. DEV. = 10.7 DEGREES REMARK 500 DG P 6 C4 - N9 - C1' ANGL. DEV. = -11.0 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 130 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 152 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 LYS A 168 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 ASP A 170 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 190 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 192 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO A 242 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ALA A 307 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -7.57 -173.41 REMARK 500 ALA A 32 58.81 -41.59 REMARK 500 GLN A 90 -72.10 -87.66 REMARK 500 ASP A 91 114.46 -19.93 REMARK 500 LYS A 131 1.64 -68.85 REMARK 500 CYS A 178 -157.51 -85.60 REMARK 500 ALA A 185 124.29 11.49 REMARK 500 SER A 202 -59.92 -12.86 REMARK 500 SER A 204 123.52 -39.19 REMARK 500 LYS A 206 171.30 37.05 REMARK 500 GLN A 207 85.22 172.37 REMARK 500 HIS A 222 33.04 77.39 REMARK 500 THR A 233 -13.30 -145.24 REMARK 500 LYS A 244 -106.82 -35.33 REMARK 500 ASN A 245 78.76 -115.25 REMARK 500 ASP A 246 110.99 -0.98 REMARK 500 GLU A 247 -32.87 170.66 REMARK 500 ASP A 263 20.29 -67.69 REMARK 500 GLN A 264 25.27 -166.67 REMARK 500 LYS A 289 -1.59 -44.31 REMARK 500 THR A 304 -2.66 -50.64 REMARK 500 ALA A 307 147.99 164.39 REMARK 500 GLU A 309 99.00 110.12 REMARK 500 PRO A 310 108.86 -46.13 REMARK 500 GLN A 324 90.42 52.37 REMARK 500 SER A 334 -76.51 -44.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG P 6 OP1 REMARK 620 2 THR A 101 O 170.1 REMARK 620 3 VAL A 103 O 89.9 92.8 REMARK 620 4 ILE A 106 O 98.9 90.3 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 342 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 77.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 9ICL A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 9ICL T 2 8 PDB 9ICL 9ICL 2 8 DBREF 9ICL P 1 6 PDB 9ICL 9ICL 1 6 SEQRES 1 T 7 DC DA DT DC DT DG DT SEQRES 1 P 6 DC DA DG DA DT DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET MN A 339 1 HET MN A 340 1 HET NA A 341 1 HET NA A 342 1 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION FORMUL 4 MN 2(MN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 8 HOH *152(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP1 DG P 6 NA NA A 341 1555 1555 2.71 LINK O LYS A 60 NA NA A 342 3547 1555 2.58 LINK O LEU A 62 NA NA A 342 3547 1555 1.97 LINK O THR A 101 NA NA A 341 1555 1555 2.20 LINK O VAL A 103 NA NA A 341 1555 1555 2.32 LINK O ILE A 106 NA NA A 341 1555 1555 2.38 LINK OD1 ASP A 190 MN MN A 339 1555 1555 2.68 LINK OD2 ASP A 190 MN MN A 340 1555 1555 2.70 CISPEP 1 GLY A 274 SER A 275 0 -0.38 SITE 1 AC1 2 ASP A 190 ASP A 192 SITE 1 AC2 2 ASP A 190 ASP A 256 SITE 1 AC3 4 THR A 101 VAL A 103 ILE A 106 DG P 6 SITE 1 AC4 5 LYS A 60 LEU A 62 PRO A 63 VAL A 65 SITE 2 AC4 5 DG P 3 CRYST1 178.634 57.763 48.491 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020622 0.00000 TER 123 DT T 8 TER 250 DG P 6 TER 2874 GLU A 335 HETATM 2875 MN MN A 339 72.422 34.206 50.590 0.31 30.00 MN HETATM 2876 MN MN A 340 69.071 29.859 51.785 0.25 30.00 MN HETATM 2877 NA NA A 341 59.840 30.180 59.038 1.00 21.72 NA HETATM 2878 NA NA A 342 41.560 33.088 45.497 1.00 44.62 NA HETATM 2879 O HOH T 517 58.281 14.811 51.564 1.00 97.13 O HETATM 2880 O HOH T 525 52.320 26.888 41.618 1.00 35.47 O HETATM 2881 O HOH T 527 59.709 23.683 48.426 1.00 44.05 O HETATM 2882 O HOH T 537 61.881 25.270 35.229 1.00100.00 O HETATM 2883 O HOH T 540 48.277 28.750 42.170 1.00 78.07 O HETATM 2884 O HOH T 546 61.565 15.919 47.159 1.00 91.78 O HETATM 2885 O HOH T 547 55.264 15.726 54.149 1.00 45.43 O HETATM 2886 O HOH T 573 58.695 22.418 40.298 1.00 46.73 O HETATM 2887 O HOH T 585 64.931 30.832 38.640 1.00 42.25 O HETATM 2888 O HOH T 594 60.688 26.090 46.973 1.00 54.30 O HETATM 2889 O HOH T 599 49.925 27.797 39.854 1.00100.00 O HETATM 2890 O HOH T 617 62.173 26.180 44.072 1.00 63.64 O HETATM 2891 O HOH T 634 45.750 20.214 50.012 1.00 94.35 O HETATM 2892 O HOH T 655 54.484 32.768 45.827 1.00 77.51 O HETATM 2893 O HOH T 665 57.284 19.147 42.725 1.00 40.26 O HETATM 2894 O HOH P 510 54.613 32.207 53.475 1.00 25.00 O HETATM 2895 O HOH P 511 49.153 25.739 50.478 1.00 39.72 O HETATM 2896 O HOH P 524 46.268 21.924 33.064 1.00 61.25 O HETATM 2897 O HOH P 526 52.908 30.287 42.975 1.00 52.28 O HETATM 2898 O HOH P 567 60.753 34.600 54.288 1.00100.00 O HETATM 2899 O HOH P 568 52.175 25.810 55.920 1.00 44.12 O HETATM 2900 O HOH P 570 46.833 31.394 44.164 1.00 52.01 O HETATM 2901 O HOH P 571 48.967 22.764 38.544 1.00 37.53 O HETATM 2902 O HOH P 572 49.648 20.177 37.873 1.00 49.98 O HETATM 2903 O HOH P 595 54.615 25.110 51.904 1.00 29.26 O HETATM 2904 O HOH P 598 50.652 23.803 42.084 1.00 97.66 O HETATM 2905 O HOH P 612 51.426 32.710 54.577 1.00 53.55 O HETATM 2906 O HOH P 613 46.702 33.258 53.512 1.00 74.30 O HETATM 2907 O HOH P 614 46.912 27.958 54.239 1.00 73.89 O HETATM 2908 O HOH P 615 43.200 31.359 49.521 1.00 78.59 O HETATM 2909 O HOH P 635 44.454 23.929 47.679 1.00 68.13 O HETATM 2910 O HOH P 648 57.283 33.422 54.879 1.00 52.51 O HETATM 2911 O HOH A 501 84.945 40.869 28.238 1.00 82.01 O HETATM 2912 O HOH A 502 76.729 32.809 50.478 1.00 18.56 O HETATM 2913 O HOH A 503 73.732 28.688 60.201 1.00 16.28 O HETATM 2914 O HOH A 505 65.845 31.670 61.371 1.00 39.55 O HETATM 2915 O HOH A 506 53.436 47.946 49.115 1.00 77.04 O HETATM 2916 O HOH A 507 87.572 39.585 52.650 1.00 54.50 O HETATM 2917 O HOH A 508 74.925 35.548 32.148 1.00 47.27 O HETATM 2918 O HOH A 509 66.109 13.526 52.957 1.00 32.87 O HETATM 2919 O HOH A 512 57.393 20.902 52.401 1.00 55.35 O HETATM 2920 O HOH A 513 61.089 22.272 50.884 1.00 40.17 O HETATM 2921 O HOH A 514 66.224 28.883 62.803 1.00 24.18 O HETATM 2922 O HOH A 515 60.315 13.582 57.600 1.00 46.12 O HETATM 2923 O HOH A 516 63.288 12.487 58.185 1.00 77.65 O HETATM 2924 O HOH A 518 74.158 15.191 61.001 1.00 60.79 O HETATM 2925 O HOH A 519 68.770 12.564 52.749 1.00 94.85 O HETATM 2926 O HOH A 520 78.577 15.329 58.157 1.00 83.46 O HETATM 2927 O HOH A 521 80.433 26.132 58.818 1.00 23.57 O HETATM 2928 O HOH A 523 72.097 32.277 59.363 1.00 52.70 O HETATM 2929 O HOH A 528 73.146 41.867 52.794 1.00 92.96 O HETATM 2930 O HOH A 529 75.367 40.838 54.659 1.00 90.00 O HETATM 2931 O HOH A 530 81.202 34.976 53.859 1.00 36.84 O HETATM 2932 O HOH A 531 73.887 34.695 25.510 1.00 55.68 O HETATM 2933 O HOH A 532 71.608 39.865 44.930 1.00 45.59 O HETATM 2934 O HOH A 533 72.611 28.395 57.930 1.00 34.20 O HETATM 2935 O HOH A 534 66.437 31.438 54.552 1.00 70.43 O HETATM 2936 O HOH A 535 64.330 30.111 42.273 1.00 92.02 O HETATM 2937 O HOH A 536 72.998 35.790 29.674 1.00 49.89 O HETATM 2938 O HOH A 538 65.842 27.436 39.749 1.00 77.46 O HETATM 2939 O HOH A 539 56.535 24.379 54.256 1.00 37.80 O HETATM 2940 O HOH A 541 70.200 12.115 41.561 1.00 24.74 O HETATM 2941 O HOH A 542 74.477 12.998 53.483 1.00 92.58 O HETATM 2942 O HOH A 543 70.600 13.691 59.356 1.00 42.18 O HETATM 2943 O HOH A 544 66.933 13.715 56.074 1.00 58.99 O HETATM 2944 O HOH A 545 61.377 15.749 41.503 1.00 50.34 O HETATM 2945 O HOH A 548 65.935 28.177 55.071 1.00 63.18 O HETATM 2946 O HOH A 550 77.563 14.679 33.274 1.00 46.00 O HETATM 2947 O HOH A 551 83.224 16.781 30.042 1.00 93.45 O HETATM 2948 O HOH A 552 86.661 15.412 36.083 1.00 77.04 O HETATM 2949 O HOH A 553 61.051 60.104 64.076 1.00 57.27 O HETATM 2950 O HOH A 554 60.926 64.431 62.984 1.00 83.61 O HETATM 2951 O HOH A 555 73.050 44.887 37.381 1.00 49.64 O HETATM 2952 O HOH A 556 47.267 48.879 49.648 1.00 64.49 O HETATM 2953 O HOH A 557 71.474 42.723 37.640 1.00 32.62 O HETATM 2954 O HOH A 558 44.495 35.948 62.054 1.00 51.94 O HETATM 2955 O HOH A 560 43.337 44.699 62.153 1.00 70.46 O HETATM 2956 O HOH A 561 45.072 41.916 64.101 1.00 70.80 O HETATM 2957 O HOH A 562 56.009 43.994 67.324 1.00 57.82 O HETATM 2958 O HOH A 563 58.185 37.709 70.299 1.00 96.39 O HETATM 2959 O HOH A 564 55.786 22.452 51.394 1.00 37.83 O HETATM 2960 O HOH A 565 59.457 25.812 52.127 1.00 16.80 O HETATM 2961 O HOH A 566 64.349 33.960 55.308 1.00 52.61 O HETATM 2962 O HOH A 575 67.415 28.836 58.252 1.00 34.19 O HETATM 2963 O HOH A 576 82.993 30.873 44.067 1.00 47.09 O HETATM 2964 O HOH A 577 79.381 23.259 59.275 1.00 40.56 O HETATM 2965 O HOH A 578 72.090 39.223 27.693 1.00 39.40 O HETATM 2966 O HOH A 579 70.369 33.920 25.842 1.00 47.80 O HETATM 2967 O HOH A 580 66.040 42.840 31.978 1.00 94.10 O HETATM 2968 O HOH A 581 65.045 46.053 34.234 1.00 66.40 O HETATM 2969 O HOH A 582 63.417 44.682 31.783 1.00 73.31 O HETATM 2970 O HOH A 583 80.068 54.081 32.224 1.00100.00 O HETATM 2971 O HOH A 584 77.117 41.681 41.453 1.00 54.73 O HETATM 2972 O HOH A 587 71.937 36.907 46.781 1.00 81.00 O HETATM 2973 O HOH A 589 86.825 19.571 58.221 1.00 75.86 O HETATM 2974 O HOH A 590 71.033 23.398 66.034 1.00 59.64 O HETATM 2975 O HOH A 591 75.176 20.587 65.280 1.00 50.02 O HETATM 2976 O HOH A 592 71.131 39.465 36.660 1.00 54.14 O HETATM 2977 O HOH A 593 67.633 41.456 30.395 1.00 49.08 O HETATM 2978 O HOH A 596 58.748 19.260 53.438 1.00 23.89 O HETATM 2979 O HOH A 597 52.260 20.150 58.514 1.00 50.07 O HETATM 2980 O HOH A 600 64.580 26.772 61.181 1.00 38.68 O HETATM 2981 O HOH A 601 61.883 32.587 58.967 1.00 90.82 O HETATM 2982 O HOH A 603 43.759 27.091 72.330 1.00 32.19 O HETATM 2983 O HOH A 604 50.646 22.770 72.516 1.00 84.09 O HETATM 2984 O HOH A 606 63.076 59.788 65.234 1.00 79.00 O HETATM 2985 O HOH A 607 61.856 54.762 50.028 1.00 52.98 O HETATM 2986 O HOH A 608 57.568 50.906 49.585 1.00 58.48 O HETATM 2987 O HOH A 610 60.532 42.782 22.280 1.00100.00 O HETATM 2988 O HOH A 611 64.891 38.683 30.063 1.00 73.39 O HETATM 2989 O HOH A 616 43.658 39.049 52.766 1.00 83.67 O HETATM 2990 O HOH A 618 84.085 29.937 41.913 1.00 53.13 O HETATM 2991 O HOH A 620 78.979 30.056 64.965 1.00 91.28 O HETATM 2992 O HOH A 621 71.344 19.114 65.625 1.00 93.38 O HETATM 2993 O HOH A 622 62.649 17.297 63.052 1.00 45.56 O HETATM 2994 O HOH A 623 60.989 25.434 74.323 1.00 65.31 O HETATM 2995 O HOH A 624 65.166 24.390 28.861 1.00 74.76 O HETATM 2996 O HOH A 625 71.293 20.421 30.027 1.00 64.79 O HETATM 2997 O HOH A 626 71.438 36.546 28.042 1.00 82.80 O HETATM 2998 O HOH A 627 81.460 38.806 24.185 1.00 63.94 O HETATM 2999 O HOH A 628 64.202 35.966 23.321 1.00 76.47 O HETATM 3000 O HOH A 629 68.866 34.003 36.358 1.00 58.03 O HETATM 3001 O HOH A 630 67.506 50.380 38.419 1.00 35.12 O HETATM 3002 O HOH A 631 73.460 39.742 47.995 1.00 91.77 O HETATM 3003 O HOH A 637 80.319 14.440 67.238 1.00 88.69 O HETATM 3004 O HOH A 638 47.925 38.184 76.047 1.00 59.86 O HETATM 3005 O HOH A 639 55.818 39.428 70.134 1.00 81.60 O HETATM 3006 O HOH A 640 60.729 36.634 67.090 1.00 54.70 O HETATM 3007 O HOH A 641 43.399 38.377 60.099 1.00 71.05 O HETATM 3008 O HOH A 642 60.029 61.726 62.464 1.00 48.97 O HETATM 3009 O HOH A 643 59.061 13.471 68.630 1.00 66.73 O HETATM 3010 O HOH A 644 73.937 10.739 36.191 1.00 50.37 O HETATM 3011 O HOH A 645 54.922 46.575 75.667 1.00 86.45 O HETATM 3012 O HOH A 646 40.149 44.364 73.811 1.00100.00 O HETATM 3013 O HOH A 647 49.881 36.332 77.538 1.00 58.17 O HETATM 3014 O HOH A 649 46.693 53.736 68.889 1.00 64.92 O HETATM 3015 O HOH A 650 57.766 42.875 75.417 1.00 55.42 O HETATM 3016 O HOH A 651 76.180 33.798 30.722 1.00 44.84 O HETATM 3017 O HOH A 652 80.133 30.694 26.774 1.00 63.93 O HETATM 3018 O HOH A 653 86.917 32.363 45.876 1.00 67.50 O HETATM 3019 O HOH A 654 68.884 10.700 43.863 1.00 64.82 O HETATM 3020 O HOH A 656 84.062 26.347 39.184 1.00 74.67 O HETATM 3021 O HOH A 657 87.173 49.476 39.447 1.00 48.35 O HETATM 3022 O HOH A 658 69.213 30.895 19.646 1.00 28.70 O HETATM 3023 O HOH A 659 73.957 37.764 54.184 1.00 55.00 O HETATM 3024 O HOH A 660 68.877 32.749 50.221 1.00 64.67 O HETATM 3025 O HOH A 661 72.598 29.447 45.559 1.00 33.60 O HETATM 3026 O HOH A 663 69.626 29.401 57.891 1.00 51.04 O HETATM 3027 O HOH A 664 70.839 34.136 46.390 1.00 50.56 O HETATM 3028 O HOH A 666 64.396 14.262 40.952 1.00 61.45 O HETATM 3029 O HOH A 667 55.838 53.317 22.672 1.00 67.51 O HETATM 3030 O HOH A 668 70.383 34.197 54.714 1.00 26.83 O CONECT 229 2877 CONECT 969 2877 CONECT 987 2877 CONECT 1004 2877 CONECT 1683 2875 CONECT 1684 2876 CONECT 2875 1683 CONECT 2876 1684 CONECT 2877 229 969 987 1004 MASTER 822 0 4 16 7 0 5 6 3027 3 9 28 END