HEADER TRANSFERASE/DNA 16-DEC-95 9ICV TITLE DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'- TITLE 2 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*TP*AP*AP*TP*GP*A)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 3 02-AUG-23 9ICV 1 REMARK LINK REVDAT 2 24-FEB-09 9ICV 1 VERSN REVDAT 1 15-NOV-96 9ICV 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT JRNL TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE JRNL TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA JRNL REF BIOCHEMISTRY V. 35 12762 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841119 JRNL DOI 10.1021/BI9529566 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 13088 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1780 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 293 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.019 ; 0.020 ; 3008 REMARK 3 BOND ANGLES (DEGREES) : 3.000 ; 3.000 ; 4068 REMARK 3 TORSION ANGLES (DEGREES) : 18.900; NULL ; 1802 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.015 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.006 ; 0.020 ; 395 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.000 ; 6.000 ; 3008 REMARK 3 NON-BONDED CONTACTS (A) : 0.020 ; 0.020 ; 151 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 757.7 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ICV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000180060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13088 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 3.70000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 13.9000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 8ICB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR DATP, REMARK 280 0.1 MILLIMOLAR ZNCL2, 0.2 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 89.98600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.81400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.98600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.81400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 REMARK 400 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 REMARK 400 AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA T 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA T 8 C2 N3 C4 REMARK 470 DA P 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA P 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA P 8 C2 N3 C4 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 ASP A 246 REMARK 475 GLU A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA T 5 O3' DA T 5 C3' -0.050 REMARK 500 DG T 6 O3' DG T 6 C3' -0.074 REMARK 500 DC P 2 C1' DC P 2 N1 0.091 REMARK 500 DT P 3 C1' DT P 3 N1 0.092 REMARK 500 DT P 3 N1 DT P 3 C2 0.067 REMARK 500 DA P 5 O3' DA P 5 C3' -0.038 REMARK 500 DA P 5 N9 DA P 5 C4 0.037 REMARK 500 DT P 6 P DT P 6 O5' -0.061 REMARK 500 GLU A 58 CD GLU A 58 OE1 0.100 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.075 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.075 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.075 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.076 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.072 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.081 REMARK 500 GLU A 153 CD GLU A 153 OE2 0.069 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.075 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.072 REMARK 500 GLU A 186 CD GLU A 186 OE1 0.073 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.068 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.077 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.072 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.075 REMARK 500 GLU A 309 CD GLU A 309 OE2 0.079 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.078 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 1 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC T 1 C3' - O3' - P ANGL. DEV. = 11.6 DEGREES REMARK 500 DA T 2 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT T 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 3 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT T 4 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT T 4 O4' - C1' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -36.3 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 35.5 DEGREES REMARK 500 DA T 5 C6 - C5 - N7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA T 5 N1 - C6 - N6 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA T 5 C5 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG T 6 C8 - N9 - C1' ANGL. DEV. = 8.2 DEGREES REMARK 500 DG T 6 C4 - N9 - C1' ANGL. DEV. = -8.7 DEGREES REMARK 500 DA T 7 C8 - N9 - C1' ANGL. DEV. = 20.4 DEGREES REMARK 500 DA T 7 C4 - N9 - C1' ANGL. DEV. = -21.0 DEGREES REMARK 500 DT P 1 P - O5' - C5' ANGL. DEV. = -10.5 DEGREES REMARK 500 DT P 1 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT P 1 C6 - N1 - C1' ANGL. DEV. = -25.3 DEGREES REMARK 500 DT P 1 C2 - N1 - C1' ANGL. DEV. = 24.7 DEGREES REMARK 500 DC P 2 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC P 2 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC P 2 C6 - N1 - C1' ANGL. DEV. = -24.9 DEGREES REMARK 500 DC P 2 C2 - N1 - C1' ANGL. DEV. = 26.0 DEGREES REMARK 500 DT P 3 O5' - C5' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DT P 3 N1 - C1' - C2' ANGL. DEV. = 11.3 DEGREES REMARK 500 DT P 3 O4' - C1' - N1 ANGL. DEV. = 8.3 DEGREES REMARK 500 DT P 3 N3 - C2 - O2 ANGL. DEV. = -6.1 DEGREES REMARK 500 DT P 3 C6 - N1 - C1' ANGL. DEV. = -17.8 DEGREES REMARK 500 DT P 3 C2 - N1 - C1' ANGL. DEV. = 19.9 DEGREES REMARK 500 DA P 5 C8 - N9 - C1' ANGL. DEV. = -19.9 DEGREES REMARK 500 DA P 5 C4 - N9 - C1' ANGL. DEV. = 20.1 DEGREES REMARK 500 DT P 6 C6 - N1 - C1' ANGL. DEV. = -20.7 DEGREES REMARK 500 DT P 6 C2 - N1 - C1' ANGL. DEV. = 20.2 DEGREES REMARK 500 DG P 7 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG P 7 C8 - N9 - C1' ANGL. DEV. = 21.8 DEGREES REMARK 500 DG P 7 C4 - N9 - C1' ANGL. DEV. = -20.8 DEGREES REMARK 500 TYR A 36 CA - CB - CG ANGL. DEV. = -12.3 DEGREES REMARK 500 TYR A 39 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -19.5 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 THR A 79 CA - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -9.37 -164.40 REMARK 500 ALA A 32 59.10 -113.79 REMARK 500 ILE A 33 -31.12 -38.56 REMARK 500 LYS A 60 -35.00 -39.80 REMARK 500 ALA A 78 -80.17 -53.96 REMARK 500 ASP A 91 109.22 -40.82 REMARK 500 CYS A 178 -151.25 -87.45 REMARK 500 ALA A 185 134.36 -17.36 REMARK 500 SER A 199 12.34 -69.78 REMARK 500 SER A 202 -55.39 -11.15 REMARK 500 GLU A 203 -77.92 -83.67 REMARK 500 SER A 204 81.74 -20.41 REMARK 500 THR A 205 84.99 -31.52 REMARK 500 LYS A 206 -172.49 39.30 REMARK 500 GLN A 207 72.53 169.86 REMARK 500 THR A 233 -18.39 -147.42 REMARK 500 LYS A 244 -124.74 -36.25 REMARK 500 ASN A 245 59.21 -92.36 REMARK 500 ASP A 246 157.60 49.65 REMARK 500 GLU A 247 -27.11 90.48 REMARK 500 GLN A 264 30.94 -142.15 REMARK 500 TYR A 265 -86.71 -64.46 REMARK 500 TYR A 266 -33.21 -34.64 REMARK 500 LYS A 289 0.19 -57.57 REMARK 500 GLU A 295 -16.23 -48.93 REMARK 500 THR A 304 13.07 -57.62 REMARK 500 ALA A 307 164.85 176.94 REMARK 500 GLU A 309 62.73 108.61 REMARK 500 PRO A 310 104.09 -35.13 REMARK 500 LYS A 317 -73.28 -63.87 REMARK 500 ASP A 332 46.56 -104.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DTP A 338 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT P 6 OP1 REMARK 620 2 THR A 101 O 143.3 REMARK 620 3 VAL A 103 O 94.8 111.6 REMARK 620 4 ILE A 106 O 71.9 85.0 85.3 REMARK 620 5 HOH A 601 O 93.5 84.1 137.3 136.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 343 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 51 ND1 REMARK 620 2 HIS A 134 ND1 112.2 REMARK 620 3 HOH A 515 O 118.6 107.9 REMARK 620 4 HOH A 516 O 126.4 100.8 87.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 342 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 76.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 339 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 192 OD2 124.9 REMARK 620 3 DTP A 338 O3G 67.5 153.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 (FOUR-DAY SOAK) REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 9ICV A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 9ICV T 1 8 PDB 9ICV 9ICV 1 8 DBREF 9ICV P 1 8 PDB 9ICV 9ICV 1 8 SEQRES 1 T 8 DC DA DT DT DA DG DA DA SEQRES 1 P 8 DT DC DT DA DA DT DG DA SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET ZN A 339 1 HET ZN A 340 1 HET NA A 341 1 HET NA A 342 1 HET ZN A 343 1 HET DTP A 338 9 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE FORMUL 4 ZN 3(ZN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 9 DTP C10 H16 N5 O12 P3 FORMUL 10 HOH *142(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP1 DT P 6 NA NA A 341 1555 1555 2.36 LINK ND1 HIS A 51 ZN ZN A 343 1555 1555 2.13 LINK O LYS A 60 NA NA A 342 1555 1555 2.80 LINK O LEU A 62 NA NA A 342 1555 1555 2.54 LINK O THR A 101 NA NA A 341 1555 1555 2.34 LINK O VAL A 103 NA NA A 341 1555 1555 2.26 LINK O ILE A 106 NA NA A 341 1555 1555 2.52 LINK ND1 HIS A 134 ZN ZN A 343 1565 1555 2.13 LINK OD1 ASP A 190 ZN ZN A 339 1555 1555 2.52 LINK OD2 ASP A 192 ZN ZN A 339 1555 1555 2.50 LINK OD1 ASP A 192 ZN ZN A 340 1555 1555 2.70 LINK O3G DTP A 338 ZN ZN A 339 1555 1555 2.62 LINK NA NA A 341 O HOH A 601 1555 1555 2.98 LINK ZN ZN A 343 O HOH A 515 1555 1565 2.19 LINK ZN ZN A 343 O HOH A 516 1555 1565 2.41 CISPEP 1 GLY A 274 SER A 275 0 -0.54 SITE 1 AC1 5 ASP A 190 ASP A 192 DTP A 338 ZN A 340 SITE 2 AC1 5 DA P 8 SITE 1 AC2 6 ASP A 190 ASP A 192 ASP A 256 ZN A 339 SITE 2 AC2 6 DG P 7 DA P 8 SITE 1 AC3 7 THR A 101 ARG A 102 VAL A 103 SER A 104 SITE 2 AC3 7 ILE A 106 HOH A 601 DT P 6 SITE 1 AC4 3 LYS A 60 LEU A 62 VAL A 65 SITE 1 AC5 4 HIS A 51 HIS A 134 HOH A 515 HOH A 516 SITE 1 AC6 13 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC6 13 SER A 188 GLY A 189 ASP A 190 ZN A 339 SITE 3 AC6 13 HOH A 522 HOH A 631 HOH A 654 HOH A 662 SITE 4 AC6 13 DA P 8 CRYST1 179.972 57.628 48.334 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020689 0.00000 TER 146 DA T 8 TER 295 DA P 8 TER 2919 GLU A 335 HETATM 2920 ZN ZN A 339 73.042 33.418 50.694 0.51 30.00 ZN HETATM 2921 ZN ZN A 340 71.172 31.005 49.763 0.54 30.00 ZN HETATM 2922 NA NA A 341 60.834 30.086 59.162 1.00 15.23 NA HETATM 2923 NA NA A 342 46.994 62.133 51.751 1.00 58.74 NA HETATM 2924 ZN ZN A 343 62.095 70.841 56.028 0.69 30.00 ZN HETATM 2925 PG DTP A 338 74.599 35.960 52.594 0.50 40.28 P HETATM 2926 O1G DTP A 338 75.407 35.597 51.428 0.50 36.69 O HETATM 2927 O2G DTP A 338 75.292 36.154 53.874 0.50 39.81 O HETATM 2928 O3G DTP A 338 73.411 34.953 52.788 0.50 35.98 O HETATM 2929 PB DTP A 338 73.452 37.870 50.725 0.50 85.02 P HETATM 2930 O1B DTP A 338 73.901 39.279 50.721 0.50 90.34 O HETATM 2931 O2B DTP A 338 74.033 36.955 49.698 0.50 90.89 O HETATM 2932 O3B DTP A 338 73.719 37.255 52.167 0.50 63.75 O HETATM 2933 O3A DTP A 338 71.819 37.849 50.624 0.50 88.83 O HETATM 2934 O HOH T 517 59.060 14.779 50.928 1.00 68.21 O HETATM 2935 O HOH T 525 53.422 27.315 41.548 1.00 52.64 O HETATM 2936 O HOH T 527 59.620 23.637 48.495 1.00 38.72 O HETATM 2937 O HOH T 537 62.010 25.686 35.745 1.00 69.63 O HETATM 2938 O HOH T 545 61.586 15.513 42.052 1.00 67.16 O HETATM 2939 O HOH T 546 62.233 16.053 47.320 1.00 83.58 O HETATM 2940 O HOH T 547 54.571 16.056 55.011 1.00 44.97 O HETATM 2941 O HOH T 564 55.819 22.184 50.502 1.00 43.86 O HETATM 2942 O HOH T 585 65.629 30.796 39.410 1.00 55.95 O HETATM 2943 O HOH T 594 61.077 25.291 47.473 1.00 42.76 O HETATM 2944 O HOH T 634 45.201 19.685 49.166 1.00 90.71 O HETATM 2945 O HOH T 651 48.841 21.699 50.586 1.00 90.36 O HETATM 2946 O HOH T 652 52.502 18.989 43.960 1.00 50.52 O HETATM 2947 O HOH P 510 54.865 32.555 53.567 1.00 36.28 O HETATM 2948 O HOH P 511 49.937 25.140 50.639 1.00 50.36 O HETATM 2949 O HOH P 526 53.200 30.622 43.005 1.00 41.71 O HETATM 2950 O HOH P 534 66.730 32.296 55.939 1.00 77.57 O HETATM 2951 O HOH P 565 59.323 26.143 52.024 1.00 43.58 O HETATM 2952 O HOH P 566 65.156 34.799 56.236 1.00 70.16 O HETATM 2953 O HOH P 567 60.855 33.660 53.765 1.00 41.84 O HETATM 2954 O HOH P 568 52.020 25.200 56.238 1.00 58.43 O HETATM 2955 O HOH P 569 46.707 27.063 52.063 1.00 61.18 O HETATM 2956 O HOH P 570 46.964 30.583 43.371 1.00 66.70 O HETATM 2957 O HOH P 571 49.728 22.617 38.110 1.00 62.77 O HETATM 2958 O HOH P 595 55.428 24.893 51.750 1.00 38.12 O HETATM 2959 O HOH P 599 48.372 28.445 40.775 1.00 62.52 O HETATM 2960 O HOH P 613 47.001 33.407 53.040 1.00 40.85 O HETATM 2961 O HOH P 614 47.352 28.027 54.066 1.00 75.92 O HETATM 2962 O HOH P 615 42.830 30.442 48.859 1.00 78.33 O HETATM 2963 O HOH P 635 45.156 24.008 47.226 1.00 91.21 O HETATM 2964 O HOH P 648 57.559 33.141 54.552 1.00 44.68 O HETATM 2965 O HOH P 653 65.759 34.879 42.674 1.00 59.81 O HETATM 2966 O HOH P 656 52.029 23.004 49.994 1.00 42.58 O HETATM 2967 O HOH P 660 71.523 34.911 46.729 1.00 59.77 O HETATM 2968 O HOH A 501 85.070 38.805 28.366 1.00 48.00 O HETATM 2969 O HOH A 502 77.334 32.294 50.187 1.00 5.60 O HETATM 2970 O HOH A 503 74.548 28.421 60.121 1.00 13.91 O HETATM 2971 O HOH A 505 66.476 31.095 60.821 1.00 33.47 O HETATM 2972 O HOH A 506 53.743 49.046 48.541 1.00 34.86 O HETATM 2973 O HOH A 507 88.111 39.852 52.861 1.00 35.16 O HETATM 2974 O HOH A 508 75.054 35.681 31.850 1.00 21.91 O HETATM 2975 O HOH A 509 66.450 12.708 52.246 1.00 27.34 O HETATM 2976 O HOH A 512 58.017 21.537 52.498 1.00 26.04 O HETATM 2977 O HOH A 513 60.472 21.870 51.202 1.00 33.76 O HETATM 2978 O HOH A 514 67.110 28.468 62.051 1.00 28.74 O HETATM 2979 O HOH A 515 60.377 13.499 57.347 1.00 22.54 O HETATM 2980 O HOH A 516 63.363 12.632 57.998 1.00 65.88 O HETATM 2981 O HOH A 518 74.705 14.967 61.088 1.00 80.97 O HETATM 2982 O HOH A 519 69.674 12.269 52.507 1.00 74.85 O HETATM 2983 O HOH A 520 78.575 14.893 58.081 1.00 49.42 O HETATM 2984 O HOH A 521 81.056 25.873 58.479 1.00 22.67 O HETATM 2985 O HOH A 522 76.824 33.850 51.791 1.00 64.54 O HETATM 2986 O HOH A 523 72.714 32.096 59.040 1.00 42.00 O HETATM 2987 O HOH A 524 41.832 49.994 64.439 1.00 61.44 O HETATM 2988 O HOH A 528 72.598 42.332 51.991 1.00 44.84 O HETATM 2989 O HOH A 529 74.922 42.492 54.011 1.00 65.43 O HETATM 2990 O HOH A 530 81.678 35.402 54.023 1.00 31.54 O HETATM 2991 O HOH A 531 73.891 33.887 25.347 1.00 52.14 O HETATM 2992 O HOH A 533 73.618 28.629 57.931 1.00 34.46 O HETATM 2993 O HOH A 535 63.903 30.106 42.773 1.00 53.28 O HETATM 2994 O HOH A 536 73.317 35.701 29.250 1.00 56.09 O HETATM 2995 O HOH A 538 67.773 26.842 38.529 1.00 48.11 O HETATM 2996 O HOH A 539 56.978 24.053 54.230 1.00 25.91 O HETATM 2997 O HOH A 541 70.709 12.173 41.412 1.00 34.64 O HETATM 2998 O HOH A 542 74.052 12.691 53.213 1.00 66.78 O HETATM 2999 O HOH A 543 71.629 13.324 58.881 1.00 38.95 O HETATM 3000 O HOH A 544 67.636 13.825 55.650 1.00 50.22 O HETATM 3001 O HOH A 550 78.659 15.332 32.544 1.00 62.13 O HETATM 3002 O HOH A 551 82.530 16.388 29.735 1.00 57.66 O HETATM 3003 O HOH A 552 87.421 15.149 35.086 1.00 59.06 O HETATM 3004 O HOH A 553 61.465 60.706 62.506 1.00 51.85 O HETATM 3005 O HOH A 555 73.207 45.150 36.725 1.00 60.42 O HETATM 3006 O HOH A 556 48.259 49.472 49.449 1.00 70.02 O HETATM 3007 O HOH A 557 72.078 42.284 37.137 1.00 32.52 O HETATM 3008 O HOH A 558 44.839 36.176 61.777 1.00100.00 O HETATM 3009 O HOH A 560 44.937 45.000 63.121 1.00 41.24 O HETATM 3010 O HOH A 561 44.933 41.183 64.037 1.00 60.23 O HETATM 3011 O HOH A 562 55.993 44.766 67.582 1.00 55.37 O HETATM 3012 O HOH A 563 58.159 38.104 69.971 1.00 91.26 O HETATM 3013 O HOH A 575 67.054 29.465 58.301 1.00 50.34 O HETATM 3014 O HOH A 576 84.408 33.768 42.747 1.00 94.74 O HETATM 3015 O HOH A 577 79.847 22.934 59.041 1.00 21.13 O HETATM 3016 O HOH A 578 72.353 38.891 27.908 1.00 33.81 O HETATM 3017 O HOH A 579 70.090 33.310 26.092 1.00 35.08 O HETATM 3018 O HOH A 580 65.360 43.015 30.707 1.00100.00 O HETATM 3019 O HOH A 581 65.747 45.201 33.980 1.00 81.62 O HETATM 3020 O HOH A 582 63.220 44.005 32.934 1.00 79.10 O HETATM 3021 O HOH A 583 79.056 52.868 31.812 1.00 35.25 O HETATM 3022 O HOH A 584 77.623 41.672 41.417 1.00 49.99 O HETATM 3023 O HOH A 589 87.330 18.945 58.228 1.00 48.09 O HETATM 3024 O HOH A 590 70.126 23.590 66.307 1.00 50.20 O HETATM 3025 O HOH A 591 75.384 20.154 64.761 1.00 43.88 O HETATM 3026 O HOH A 592 71.492 38.997 36.589 1.00 50.25 O HETATM 3027 O HOH A 593 68.390 42.277 30.670 1.00 53.16 O HETATM 3028 O HOH A 596 59.217 19.587 53.016 1.00 32.04 O HETATM 3029 O HOH A 597 51.967 18.741 57.834 1.00 57.64 O HETATM 3030 O HOH A 600 64.872 26.053 61.032 1.00 52.68 O HETATM 3031 O HOH A 601 62.738 32.225 58.322 1.00 69.83 O HETATM 3032 O HOH A 602 78.067 34.433 64.899 1.00 68.69 O HETATM 3033 O HOH A 603 44.252 27.620 72.656 1.00 65.72 O HETATM 3034 O HOH A 604 51.108 21.926 72.897 1.00 50.91 O HETATM 3035 O HOH A 606 63.662 59.618 64.465 1.00 62.27 O HETATM 3036 O HOH A 607 60.982 53.788 50.321 1.00 65.04 O HETATM 3037 O HOH A 608 57.936 50.433 49.543 1.00 90.66 O HETATM 3038 O HOH A 610 60.416 42.075 22.238 1.00100.00 O HETATM 3039 O HOH A 611 65.360 38.088 29.887 1.00 68.45 O HETATM 3040 O HOH A 612 50.117 32.678 54.814 1.00 40.00 O HETATM 3041 O HOH A 616 42.872 39.633 52.983 1.00 66.84 O HETATM 3042 O HOH A 617 62.904 26.552 45.245 1.00 42.00 O HETATM 3043 O HOH A 618 83.885 30.889 43.642 1.00 40.81 O HETATM 3044 O HOH A 620 77.623 29.575 62.601 1.00 47.71 O HETATM 3045 O HOH A 621 72.829 19.155 65.825 1.00 89.80 O HETATM 3046 O HOH A 622 63.646 17.268 63.729 1.00 76.76 O HETATM 3047 O HOH A 623 62.027 25.578 74.103 1.00 89.29 O HETATM 3048 O HOH A 624 65.371 23.351 28.623 1.00 52.22 O HETATM 3049 O HOH A 625 71.532 20.307 29.794 1.00 85.97 O HETATM 3050 O HOH A 626 71.316 36.242 26.265 1.00 77.32 O HETATM 3051 O HOH A 627 82.831 38.860 25.062 1.00 85.39 O HETATM 3052 O HOH A 628 64.924 36.617 22.702 1.00 32.46 O HETATM 3053 O HOH A 629 68.954 33.852 37.092 1.00100.00 O HETATM 3054 O HOH A 631 73.959 39.483 47.752 1.00 63.22 O HETATM 3055 O HOH A 636 80.921 14.858 61.030 1.00 87.52 O HETATM 3056 O HOH A 637 81.123 14.501 66.925 1.00 98.68 O HETATM 3057 O HOH A 638 48.019 37.339 76.016 1.00 67.35 O HETATM 3058 O HOH A 639 56.582 40.485 69.706 1.00 47.17 O HETATM 3059 O HOH A 640 61.814 37.134 67.310 1.00 32.56 O HETATM 3060 O HOH A 641 43.610 38.695 60.333 1.00 66.18 O HETATM 3061 O HOH A 642 60.328 63.119 62.776 1.00 60.05 O HETATM 3062 O HOH A 643 58.549 14.254 68.674 1.00 59.90 O HETATM 3063 O HOH A 644 74.901 10.669 36.181 1.00 72.24 O HETATM 3064 O HOH A 645 55.670 46.205 75.539 1.00 42.69 O HETATM 3065 O HOH A 646 50.150 15.965 71.036 1.00 95.86 O HETATM 3066 O HOH A 647 49.955 36.435 76.891 1.00 72.20 O HETATM 3067 O HOH A 649 46.899 54.175 68.634 1.00 46.30 O HETATM 3068 O HOH A 650 57.883 48.494 22.511 1.00 16.59 O HETATM 3069 O HOH A 654 75.161 38.806 54.438 1.00 33.08 O HETATM 3070 O HOH A 657 76.884 34.030 30.349 1.00 35.07 O HETATM 3071 O HOH A 658 69.451 29.302 52.762 1.00 44.07 O HETATM 3072 O HOH A 661 67.655 13.510 48.902 1.00 51.93 O HETATM 3073 O HOH A 662 71.250 34.332 53.654 1.00 53.41 O HETATM 3074 O HOH A 663 73.255 43.302 49.189 1.00 46.54 O HETATM 3075 O HOH A 664 66.204 27.842 55.664 1.00 1.00 O CONECT 250 2922 CONECT 630 2924 CONECT 692 2923 CONECT 710 2923 CONECT 1014 2922 CONECT 1032 2922 CONECT 1049 2922 CONECT 1728 2920 CONECT 1744 2921 CONECT 1745 2920 CONECT 2920 1728 1745 2928 CONECT 2921 1744 CONECT 2922 250 1014 1032 1049 CONECT 2922 3031 CONECT 2923 692 710 CONECT 2924 630 CONECT 2925 2926 2927 2928 2932 CONECT 2926 2925 CONECT 2927 2925 CONECT 2928 2920 2925 CONECT 2929 2930 2931 2932 2933 CONECT 2930 2929 CONECT 2931 2929 CONECT 2932 2925 2929 CONECT 2933 2929 CONECT 3031 2922 MASTER 841 0 6 16 7 0 12 6 3072 3 26 28 END