HEADER DNA BINDING PROTEIN 19-FEB-25 9IG7 TITLE KOD-H4 DNA POLYMERASE MUTANT IN A BINARY COMPLEX WITH DNA:DNA TITLE 2 CONTAINING TWO ATNA NUCLEOTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A)-3'); COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA/RNA (5'-D(*AP*AP*C)-R(P*(A6U)P*(A6G))- COMPND 12 D(P*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'); COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE, ATNA, MODIFIED NUCLEOTIDES, REVERSE TRANSCRIPTASE, KEYWDS 2 TRANSFERASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.GUTFREUND,K.BETZ REVDAT 1 04-MAR-26 9IG7 0 JRNL AUTH C.GUTFREUND,K.BETZ JRNL TITL CRYSTALLOGRAPHIC INSIGHTS INTO A MUTANT ARCHAEAL B-FAMILY JRNL TITL 2 POLYMERASE PROCESSING ATNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 70179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3700 - 6.4100 1.00 4546 143 0.1604 0.2008 REMARK 3 2 6.4100 - 5.0900 1.00 4528 138 0.1804 0.2477 REMARK 3 3 5.0900 - 4.4500 1.00 4552 139 0.1498 0.1937 REMARK 3 4 4.4500 - 4.0400 1.00 4531 138 0.1668 0.2258 REMARK 3 5 4.0400 - 3.7500 1.00 4550 140 0.1883 0.2664 REMARK 3 6 3.7500 - 3.5300 1.00 4586 138 0.2133 0.2899 REMARK 3 7 3.5300 - 3.3500 1.00 4517 140 0.2181 0.3192 REMARK 3 8 3.3500 - 3.2100 1.00 4553 138 0.2356 0.3433 REMARK 3 9 3.2100 - 3.0800 1.00 4534 137 0.2804 0.3242 REMARK 3 10 3.0800 - 2.9800 1.00 4537 139 0.2698 0.3235 REMARK 3 11 2.9800 - 2.8800 1.00 4533 141 0.2600 0.3112 REMARK 3 12 2.8800 - 2.8000 1.00 4541 142 0.2650 0.2883 REMARK 3 13 2.8000 - 2.7300 1.00 4504 136 0.2679 0.3421 REMARK 3 14 2.7300 - 2.6600 1.00 4556 140 0.2922 0.3204 REMARK 3 15 2.6600 - 2.6000 0.99 4523 139 0.3200 0.3625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.402 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7062 REMARK 3 ANGLE : 0.546 9631 REMARK 3 CHIRALITY : 0.041 1035 REMARK 3 PLANARITY : 0.005 1133 REMARK 3 DIHEDRAL : 22.024 2776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.5795 21.4449 16.4442 REMARK 3 T TENSOR REMARK 3 T11: 0.4247 T22: 0.5521 REMARK 3 T33: 0.4330 T12: 0.0371 REMARK 3 T13: 0.0108 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.4481 L22: 1.1195 REMARK 3 L33: 0.6140 L12: 0.4094 REMARK 3 L13: 0.2197 L23: 0.3972 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.1074 S13: -0.3102 REMARK 3 S21: -0.0101 S22: -0.0156 S23: -0.0479 REMARK 3 S31: 0.1334 S32: 0.0303 S33: 0.0254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9IG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1292145602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000, 20% V/V ETHYLENE REMARK 280 GLYCOL, 0.02 M SODIUM FORMATE, 0.02 M AMMONIUM ACETATE, 0.02 M REMARK 280 TRISODIUM CITRATE, 0.02 M SODIUM POTASSIUM L-TARTRATE, 0.02 M REMARK 280 SODIUM OXAMATE, 0.1 M MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.73600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.73550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.73600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.73550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 287 O HOH A 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 3 C3' - O3' - P ANGL. DEV. = 14.4 DEGREES REMARK 500 A6U T 4 O3' - P - OP1 ANGL. DEV. = 10.9 DEGREES REMARK 500 A6U T 4 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 A6G T 5 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 58 111.59 -164.09 REMARK 500 GLU A 69 115.42 -168.31 REMARK 500 ASP A 164 -148.64 -149.13 REMARK 500 ARG A 247 -146.23 -118.99 REMARK 500 ASP A 373 -167.59 -76.25 REMARK 500 ARG A 381 53.15 -118.38 REMARK 500 TYR A 384 -138.34 -120.65 REMARK 500 TYR A 384 -138.34 -120.65 REMARK 500 GLU A 385 177.03 65.31 REMARK 500 GLU A 385 177.02 65.30 REMARK 500 TYR A 388 135.47 -177.42 REMARK 500 ASN A 399 72.00 53.97 REMARK 500 GLN A 436 -66.16 62.99 REMARK 500 THR A 541 -72.51 69.65 REMARK 500 THR A 590 -164.43 -165.60 REMARK 500 ASP A 635 70.94 -106.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P 106 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 808 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 910 O REMARK 620 2 HOH A 927 O 88.2 REMARK 620 3 HOH A 966 O 145.7 126.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN T 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC T 3 OP2 REMARK 620 2 A6U T 4 OP2 85.1 REMARK 620 3 HOH T 204 O 103.0 80.8 REMARK 620 4 HOH T 206 O 90.9 92.5 163.8 REMARK 620 5 HOH T 211 O 164.2 79.2 76.8 87.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9EMH RELATED DB: PDB REMARK 900 RELATED ID: 9EMI RELATED DB: PDB REMARK 900 RELATED ID: 9EMF RELATED DB: PDB REMARK 900 RELATED ID: 9EN0 RELATED DB: PDB REMARK 900 RELATED ID: 8S84 RELATED DB: PDB REMARK 900 RELATED ID: 8S8T RELATED DB: PDB REMARK 900 RELATED ID: 8S87 RELATED DB: PDB DBREF 9IG7 A 1 774 UNP D0VWU9 D0VWU9_THEKO 1 774 DBREF 9IG7 P 1 13 PDB 9IG7 9IG7 1 13 DBREF 9IG7 T 1 16 PDB 9IG7 9IG7 1 16 SEQADV 9IG7 GLN A 93 UNP D0VWU9 VAL 93 ENGINEERED MUTATION SEQADV 9IG7 THR A 114 UNP D0VWU9 ILE 114 ENGINEERED MUTATION SEQADV 9IG7 ALA A 141 UNP D0VWU9 ASP 141 ENGINEERED MUTATION SEQADV 9IG7 ALA A 143 UNP D0VWU9 GLU 143 ENGINEERED MUTATION SEQADV 9IG7 HIS A 147 UNP D0VWU9 GLU 147 ENGINEERED MUTATION SEQADV 9IG7 LYS A 383 UNP D0VWU9 SER 383 ENGINEERED MUTATION SEQADV 9IG7 GLY A 429 UNP D0VWU9 LYS 429 ENGINEERED MUTATION SEQADV 9IG7 LEU A 445 UNP D0VWU9 PHE 445 ENGINEERED MUTATION SEQADV 9IG7 LEU A 485 UNP D0VWU9 ALA 485 ENGINEERED MUTATION SEQADV 9IG7 VAL A 493 UNP D0VWU9 TYR 493 ENGINEERED MUTATION SEQADV 9IG7 HIS A 496 UNP D0VWU9 TYR 496 ENGINEERED MUTATION SEQADV 9IG7 MET A 497 UNP D0VWU9 TYR 497 ENGINEERED MUTATION SEQADV 9IG7 PHE A 499 UNP D0VWU9 TYR 499 ENGINEERED MUTATION SEQADV 9IG7 GLU A 500 UNP D0VWU9 ALA 500 ENGINEERED MUTATION SEQADV 9IG7 ASN A 501 UNP D0VWU9 ARG 501 ENGINEERED MUTATION SEQADV 9IG7 LEU A 521 UNP D0VWU9 ILE 521 ENGINEERED MUTATION SEQADV 9IG7 LYS A 584 UNP D0VWU9 GLU 584 ENGINEERED MUTATION SEQADV 9IG7 LYS A 664 UNP D0VWU9 GLU 664 ENGINEERED MUTATION SEQADV 9IG7 ARG A 726 UNP D0VWU9 LYS 726 ENGINEERED MUTATION SEQADV 9IG7 LYS A 735 UNP D0VWU9 ASN 735 ENGINEERED MUTATION SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP GLN PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP THR PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN LYS TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLY SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP LEU PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG LEU ILE LYS ILE LEU ALA ASN SER VAL TYR SEQRES 39 A 774 GLY HIS MET GLY PHE GLU ASN ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 LEU THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 LYS GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS ARG TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU LYS GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR SEQRES 1 P 13 DG DA DC DC DA DC DG DG DC DC DA DC DA SEQRES 1 T 16 DA DA DC A6U A6G DT DG DG DC DC DG DT DG SEQRES 2 T 16 DG DT DC HET A6U T 4 21 HET A6G T 5 24 HET IMD A 801 5 HET GOL A 802 6 HET FMT A 803 3 HET GOL A 804 6 HET MES A 805 12 HET EDO A 806 4 HET GOL A 807 6 HET MG A 808 1 HET EDO T 101 4 HET MN T 102 1 HETNAM A6U 1,5-ANHYDRO-2-DEOXY-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN- HETNAM 2 A6U 1(2H)-YL)-6-O-PHOSPHONO-D-ALTRITOL HETNAM A6G 2-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-1,5- HETNAM 2 A6G ANHYDRO-2-DEOXY-6-O-PHOSPHONO-D-ALTRITOL HETNAM IMD IMIDAZOLE HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETSYN A6U ((2R,3S,4S,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)- HETSYN 2 A6U YL)-3,4-DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL)METHYL HETSYN 3 A6U DIHYDROGEN PHOSPHATE HETSYN A6G ((2R,3S,4S,5R)-5-(2-AMINO-6-OXO-1H-PURIN-9(6H)-YL)-3,4- HETSYN 2 A6G DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL)METHYL DIHYDROGEN HETSYN 3 A6G PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 A6U C10 H15 N2 O9 P FORMUL 3 A6G C11 H16 N5 O8 P FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 FMT C H2 O2 FORMUL 8 MES C6 H13 N O4 S FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 MG MG 2+ FORMUL 13 MN MN 2+ FORMUL 14 HOH *140(H2 O) HELIX 1 AA1 ASP A 44 SER A 46 5 3 HELIX 2 AA2 ALA A 47 LYS A 52 1 6 HELIX 3 AA3 GLN A 91 GLU A 102 1 12 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 GLY A 227 1 14 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 GLY A 284 1 11 HELIX 9 AA9 TYR A 291 GLY A 302 1 12 HELIX 10 AB1 ASN A 304 GLY A 338 1 35 HELIX 11 AB2 SER A 340 SER A 345 1 6 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 ARG A 380 1 8 HELIX 14 AB5 SER A 407 HIS A 416 1 10 HELIX 15 AB6 GLY A 447 THR A 470 1 24 HELIX 16 AB7 ASP A 472 GLY A 498 1 27 HELIX 17 AB8 CYS A 506 LYS A 531 1 26 HELIX 18 AB9 ASP A 552 LEU A 571 1 20 HELIX 19 AC1 LEU A 608 ARG A 612 5 5 HELIX 20 AC2 SER A 616 GLY A 634 1 19 HELIX 21 AC3 ASP A 635 LYS A 652 1 18 HELIX 22 AC4 PRO A 656 VAL A 661 5 6 HELIX 23 AC5 ASP A 669 TYR A 673 5 5 HELIX 24 AC6 GLY A 677 ALA A 687 1 11 HELIX 25 AC7 ALA A 688 GLY A 690 5 3 HELIX 26 AC8 ARG A 709 ARG A 713 1 5 HELIX 27 AC9 ASP A 718 PHE A 720 5 3 HELIX 28 AD1 ASP A 728 LYS A 735 1 8 HELIX 29 AD2 GLN A 736 ARG A 746 1 11 HELIX 30 AD3 ALA A 747 GLY A 749 5 3 HELIX 31 AD4 ARG A 751 LEU A 755 5 5 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O PHE A 19 N LEU A 3 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O LYS A 27 N LYS A 20 SHEET 1 AA2 4 ARG A 67 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O VAL A 80 N LYS A 73 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N PHE A 38 O LEU A 85 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 143 O LEU A 158 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 MET A 244 0 SHEET 2 AA5 2 ARG A 247 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 6 LYS A 535 ASP A 540 0 SHEET 2 AA6 6 GLY A 543 THR A 547 -1 O THR A 547 N LYS A 535 SHEET 3 AA6 6 GLY A 395 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA6 6 LEU A 577 THR A 590 -1 O GLU A 578 N ASP A 404 SHEET 5 AA6 6 LYS A 593 ILE A 597 -1 O ALA A 595 N PHE A 587 SHEET 6 AA6 6 ILE A 603 ARG A 606 -1 O ARG A 606 N TYR A 594 SHEET 1 AA7 2 TYR A 431 VAL A 433 0 SHEET 2 AA7 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SHEET 1 AA8 3 ILE A 662 GLN A 665 0 SHEET 2 AA8 3 VAL A 698 VAL A 703 -1 O TYR A 701 N ILE A 662 SHEET 3 AA8 3 ALA A 714 PRO A 716 -1 O ILE A 715 N ILE A 702 SSBOND 1 CYS A 506 CYS A 509 1555 1555 2.04 LINK O3' DC T 3 P A6U T 4 1555 1555 1.56 LINK O3' A6U T 4 P A6G T 5 1555 1555 1.56 LINK O3' A6G T 5 P DT T 6 1555 1555 1.56 LINK MG MG A 808 O HOH A 910 1555 1555 2.56 LINK MG MG A 808 O HOH A 927 1555 1555 2.66 LINK MG MG A 808 O HOH A 966 1555 1555 2.90 LINK OP2 DC T 3 MN MN T 102 1555 1555 2.25 LINK OP2 A6U T 4 MN MN T 102 1555 1555 2.37 LINK MN MN T 102 O HOH T 204 1555 1555 2.59 LINK MN MN T 102 O HOH T 206 1555 1555 2.77 LINK MN MN T 102 O HOH T 211 1555 1555 2.59 CRYST1 111.472 153.471 69.030 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014486 0.00000 CONECT 4198 4222 CONECT 4222 4198 CONECT 6529 6866 CONECT 6535 6546 CONECT 6546 6535 6563 6565 6566 CONECT 6547 6548 6554 6555 CONECT 6548 6547 6549 6550 CONECT 6549 6548 CONECT 6550 6548 6551 CONECT 6551 6550 6552 6553 CONECT 6552 6551 CONECT 6553 6551 6554 CONECT 6554 6547 6553 CONECT 6555 6547 6556 6564 CONECT 6556 6555 6557 6558 CONECT 6557 6556 CONECT 6558 6556 6559 6560 CONECT 6559 6558 6567 CONECT 6560 6558 6561 6562 CONECT 6561 6560 6564 CONECT 6562 6560 6563 CONECT 6563 6546 6562 CONECT 6564 6555 6561 CONECT 6565 6546 CONECT 6566 6546 6866 CONECT 6567 6559 6587 6589 6590 CONECT 6568 6569 6574 CONECT 6569 6568 6570 6571 CONECT 6570 6569 CONECT 6571 6569 6572 CONECT 6572 6571 6573 6578 CONECT 6573 6572 6574 6576 CONECT 6574 6568 6573 6575 CONECT 6575 6574 CONECT 6576 6573 6577 CONECT 6577 6576 6578 CONECT 6578 6572 6577 6579 CONECT 6579 6578 6580 6588 CONECT 6580 6579 6581 6582 CONECT 6581 6580 CONECT 6582 6580 6583 6584 CONECT 6583 6582 6591 CONECT 6584 6582 6585 6586 CONECT 6585 6584 6588 CONECT 6586 6584 6587 CONECT 6587 6567 6586 CONECT 6588 6579 6585 CONECT 6589 6567 CONECT 6590 6567 CONECT 6591 6583 CONECT 6819 6820 6823 CONECT 6820 6819 6821 CONECT 6821 6820 6822 CONECT 6822 6821 6823 CONECT 6823 6819 6822 CONECT 6824 6825 6826 CONECT 6825 6824 CONECT 6826 6824 6827 6828 CONECT 6827 6826 CONECT 6828 6826 6829 CONECT 6829 6828 CONECT 6830 6831 6832 CONECT 6831 6830 CONECT 6832 6830 CONECT 6833 6834 6835 CONECT 6834 6833 CONECT 6835 6833 6836 6837 CONECT 6836 6835 CONECT 6837 6835 6838 CONECT 6838 6837 CONECT 6839 6840 6844 CONECT 6840 6839 6841 CONECT 6841 6840 6842 CONECT 6842 6841 6843 6845 CONECT 6843 6842 6844 CONECT 6844 6839 6843 CONECT 6845 6842 6846 CONECT 6846 6845 6847 CONECT 6847 6846 6848 6849 6850 CONECT 6848 6847 CONECT 6849 6847 CONECT 6850 6847 CONECT 6851 6852 6853 CONECT 6852 6851 CONECT 6853 6851 6854 CONECT 6854 6853 CONECT 6855 6856 6857 CONECT 6856 6855 CONECT 6857 6855 6858 6859 CONECT 6858 6857 CONECT 6859 6857 6860 CONECT 6860 6859 CONECT 6861 6876 6893 6932 CONECT 6862 6863 6864 CONECT 6863 6862 CONECT 6864 6862 6865 CONECT 6865 6864 CONECT 6866 6529 6566 6995 6997 CONECT 6866 7002 CONECT 6876 6861 CONECT 6893 6861 CONECT 6932 6861 CONECT 6995 6866 CONECT 6997 6866 CONECT 7002 6866 MASTER 353 0 12 31 28 0 0 6 6979 3 105 63 END