HEADER HYDROLASE/DNA 19-JUN-24 9II8 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS DING PROTEIN IN COMPLEX TITLE 2 WITH SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*TP*TP*TP*T)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3'-5' EXONUCLEASE DING; COMPND 7 CHAIN: A; COMPND 8 EC: 3.1.-.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN NCTC 8325 / PS SOURCE 7 47); SOURCE 8 ORGANISM_TAXID: 93061; SOURCE 9 GENE: DING, SAOUHSC_01472; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, NUCLEASE, HYDROLASE/DNA, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.CHENG REVDAT 1 25-JUN-25 9II8 0 JRNL AUTH K.CHENG,T.GAO,W.HAO JRNL TITL STRUCTURE OF STAPHYLOCOCCUS AUREUS DING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 111.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1111.7700 - 7.0300 1.00 2702 137 0.2239 0.2606 REMARK 3 2 7.0300 - 5.5800 1.00 2581 128 0.2959 0.3072 REMARK 3 3 5.5800 - 4.8700 1.00 2553 148 0.2513 0.2575 REMARK 3 4 4.8700 - 4.4300 1.00 2517 148 0.2371 0.2674 REMARK 3 5 4.4300 - 4.1100 1.00 2533 130 0.2546 0.2775 REMARK 3 6 4.1100 - 3.8700 1.00 2505 119 0.2989 0.3065 REMARK 3 7 3.8700 - 3.6700 1.00 2545 127 0.3078 0.3276 REMARK 3 8 3.6700 - 3.5100 1.00 2501 138 0.2945 0.3308 REMARK 3 9 3.5100 - 3.3800 1.00 2488 140 0.3274 0.3437 REMARK 3 10 3.3800 - 3.2600 1.00 2524 122 0.3983 0.4600 REMARK 3 11 3.2600 - 3.1600 1.00 2490 141 0.5044 0.4906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.562 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 115.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 119.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7582 REMARK 3 ANGLE : 1.376 10242 REMARK 3 CHIRALITY : 0.097 1153 REMARK 3 PLANARITY : 0.019 1290 REMARK 3 DIHEDRAL : 7.121 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.8631 52.9557 31.4545 REMARK 3 T TENSOR REMARK 3 T11: 0.6648 T22: 0.7474 REMARK 3 T33: 0.5862 T12: -0.1116 REMARK 3 T13: 0.0748 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.8971 L22: 1.2972 REMARK 3 L33: 0.3094 L12: 0.3633 REMARK 3 L13: 0.0171 L23: -0.4210 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.3455 S13: -0.2634 REMARK 3 S21: -0.3756 S22: 0.0982 S23: -0.0251 REMARK 3 S31: 0.0416 S32: 0.0968 S33: -0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9II8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29417 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.160 REMARK 200 RESOLUTION RANGE LOW (A) : 111.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M MES (PH 6.5), AND REMARK 280 15% POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 114.58500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.01500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 114.58500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 64.01500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 114.58500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 64.01500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 114.58500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 64.01500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 114.58500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 64.01500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 114.58500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 64.01500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 114.58500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 64.01500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 114.58500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 114.58500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 897 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 780 CE1 PHE A 783 1.60 REMARK 500 O SER A 724 OH TYR A 752 1.83 REMARK 500 CB THR A 780 CE1 PHE A 783 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 66 CD ARG A 241 4555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 146 -139.11 50.14 REMARK 500 ASP A 152 -71.72 -84.16 REMARK 500 PHE A 169 1.97 -66.15 REMARK 500 LYS A 171 -164.62 -121.22 REMARK 500 LEU A 187 -175.49 -177.19 REMARK 500 GLN A 201 50.64 -92.60 REMARK 500 GLU A 215 -119.83 47.63 REMARK 500 GLN A 216 43.16 -105.45 REMARK 500 LYS A 226 -166.19 -109.02 REMARK 500 LEU A 249 -154.81 -107.71 REMARK 500 LYS A 299 -165.08 -129.49 REMARK 500 LYS A 317 -66.22 -137.88 REMARK 500 ASN A 327 -4.71 75.75 REMARK 500 LYS A 484 -133.95 43.17 REMARK 500 LEU A 498 -63.87 -99.58 REMARK 500 SER A 579 -9.58 -145.18 REMARK 500 LEU A 617 0.10 -65.09 REMARK 500 VAL A 640 -63.45 -133.94 REMARK 500 ASN A 657 -126.72 47.94 REMARK 500 ASN A 668 -70.89 -90.63 REMARK 500 THR A 680 18.98 55.30 REMARK 500 LEU A 682 -139.24 56.28 REMARK 500 TYR A 752 80.27 -150.82 REMARK 500 TYR A 826 -69.98 -136.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 252 0.08 SIDE CHAIN REMARK 500 ARG A 834 0.10 SIDE CHAIN REMARK 500 ARG A 836 0.13 SIDE CHAIN REMARK 500 ARG A 841 0.12 SIDE CHAIN REMARK 500 ARG A 844 0.09 SIDE CHAIN REMARK 500 ARG A 876 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ZEF RELATED DB: PDB DBREF 9II8 B 2 5 PDB 9II8 9II8 2 5 DBREF 9II8 A 1 897 UNP Q2FYH5 DING_STAA8 1 897 SEQADV 9II8 PHE A 210 UNP Q2FYH5 SER 210 CONFLICT SEQADV 9II8 ARG A 241 UNP Q2FYH5 SER 241 CONFLICT SEQRES 1 B 4 DT DT DT DT SEQRES 1 A 897 MET GLY MET ALA THR TYR ALA VAL VAL ASP LEU GLU THR SEQRES 2 A 897 THR GLY ASN GLN LEU ASP PHE ASP ASP ILE ILE GLN ILE SEQRES 3 A 897 GLY ILE THR PHE VAL ARG ASN ASN GLN ILE ILE ASP THR SEQRES 4 A 897 TYR HIS SER MET ILE ARG THR ASN LEU GLU ILE PRO PRO SEQRES 5 A 897 PHE ILE GLN ALA LEU THR SER ILE GLU GLU ASN MET LEU SEQRES 6 A 897 GLN GLN ALA PRO TYR PHE ASN GLN VAL ALA GLN GLU ILE SEQRES 7 A 897 TYR ASP LYS ILE LYS ASP CYS ILE PHE VAL ALA HIS ASN SEQRES 8 A 897 VAL ASP PHE ASP LEU ASN PHE ILE LYS LYS ALA PHE LYS SEQRES 9 A 897 ASP CYS ASN ILE GLN TYR ARG PRO LYS LYS VAL ILE ASP SEQRES 10 A 897 THR LEU GLU ILE PHE LYS ILE ALA PHE PRO THR ASP LYS SEQRES 11 A 897 SER TYR GLN LEU SER GLU LEU ALA GLU ALA HIS GLY ILE SEQRES 12 A 897 THR LEU ALA ASN ALA HIS ARG ALA ASP GLU ASP ALA ALA SEQRES 13 A 897 THR THR ALA LYS LEU MET ILE LEU ALA PHE GLU LYS PHE SEQRES 14 A 897 GLU LYS LEU PRO LEU ASP THR LEU LYS GLN LEU TYR TYR SEQRES 15 A 897 LEU SER LYS GLN LEU LYS TYR ASP LEU TYR ASP ILE PHE SEQRES 16 A 897 PHE GLU MET VAL ARG GLN TYR ASP ALA LYS PRO LEU ASP SEQRES 17 A 897 LYS PHE TYR GLU LYS PHE GLU GLN ILE ILE TYR ARG LYS SEQRES 18 A 897 GLN VAL ASP PHE LYS LYS PRO THR THR ASN TYR ASN GLY SEQRES 19 A 897 SER LEU LYS SER LEU TYR ARG LYS ALA VAL ASP GLN LEU SEQRES 20 A 897 GLY LEU THR TYR ARG PRO GLN GLN LEU TYR LEU ALA GLU SEQRES 21 A 897 THR ILE LEU ASP GLN LEU MET HIS SER GLU LYS ALA MET SEQRES 22 A 897 ILE GLU ALA SER LEU GLY SER GLY LYS SER LEU ALA TYR SEQRES 23 A 897 LEU LEU ALA ALA LEU MET TYR ASN ILE GLU THR GLY LYS SEQRES 24 A 897 HIS VAL MET ILE SER THR ASN THR LYS LEU LEU GLN SER SEQRES 25 A 897 GLN LEU LEU GLU LYS ASP ILE PRO ALA MET ASN GLU ALA SEQRES 26 A 897 LEU ASN PHE LYS ILE ASN ALA LEU LEU ILE LYS SER LYS SEQRES 27 A 897 SER ASP TYR ILE SER LEU GLY LEU ILE SER GLN ILE LEU SEQRES 28 A 897 LYS ASP ASP THR SER ASN TYR GLU VAL ASN ILE LEU LYS SEQRES 29 A 897 MET GLN LEU LEU ILE TRP ILE THR GLU THR PRO SER GLY SEQRES 30 A 897 ASP ILE GLN GLU LEU ASN LEU LYS GLY GLY GLN LYS MET SEQRES 31 A 897 TYR PHE ASP GLN LYS ILE GLU THR TYR VAL PRO ALA ARG SEQRES 32 A 897 HIS ASP VAL HIS TYR TYR ASN PHE ILE LYS ARG ASN ALA SEQRES 33 A 897 GLN ASN ILE GLN ILE GLY ILE THR ASN HIS ALA HIS LEU SEQRES 34 A 897 ILE HIS SER ASP VAL GLU ASN SER ILE TYR GLN LEU PHE SEQRES 35 A 897 ASP ASP CYS ILE VAL ASP GLU ALA HIS ARG LEU PRO ASP SEQRES 36 A 897 TYR ALA LEU ASN GLN VAL THR ASN GLU LEU SER TYR ALA SEQRES 37 A 897 ASP ILE LYS TYR GLN LEU GLY LEU ILE GLY LYS ASN GLU SEQRES 38 A 897 ASN GLU LYS LEU LEU LYS ALA ILE ASP GLN LEU GLU LYS SEQRES 39 A 897 GLN ARG ILE LEU GLU LYS LEU ASP ILE ALA PRO ILE ASP SEQRES 40 A 897 ILE PHE GLY LEU LYS ALA SER MET ASN GLU ILE HIS GLU SEQRES 41 A 897 LEU ASN GLU GLN LEU PHE SER THR ILE PHE THR ILE ILE SEQRES 42 A 897 ASN ASP SER ASP VAL TYR ASP ASP ASP ILE HIS ARG PHE SEQRES 43 A 897 HIS ASN VAL PHE THR PHE GLU THR LYS ASP ILE LEU LYS SEQRES 44 A 897 ASP LEU HIS ALA ILE ILE ASP LYS LEU ASN LYS THR LEU SEQRES 45 A 897 GLU ILE PHE ASN GLY ILE SER HIS LYS THR VAL LYS SER SEQRES 46 A 897 LEU ARG LYS GLN LEU LEU TYR LEU LYS ASP LYS PHE LYS SEQRES 47 A 897 ASN ILE GLU GLN SER LEU LYS ALA GLY HIS THR SER PHE SEQRES 48 A 897 ILE SER ILE LYS ASN LEU SER GLN LYS SER THR ILE ARG SEQRES 49 A 897 LEU TYR VAL LYS ASP TYR ALA VAL LYS ASP VAL LEU THR SEQRES 50 A 897 LYS GLN VAL LEU GLU LYS PHE LYS SER LEU ILE PHE ILE SEQRES 51 A 897 SER GLY THR LEU LYS PHE ASN HIS SER PHE GLU ALA PHE SEQRES 52 A 897 LYS GLN LEU PHE ASN LYS ASP VAL HIS PHE ASN THR PHE SEQRES 53 A 897 GLU VAL ASN THR SER LEU GLN SER ALA LYS ASN THR SER SEQRES 54 A 897 VAL PHE ILE PRO SER ASP VAL ALA SER TYR GLN TYR LYS SEQRES 55 A 897 ASN ILE ASP GLU TYR VAL ALA SER ILE VAL SER TYR ILE SEQRES 56 A 897 ILE GLU TYR THR THR ILE THR SER SER LYS CYS LEU VAL SEQRES 57 A 897 LEU PHE THR SER TYR LYS MET MET HIS MET VAL GLN ASP SEQRES 58 A 897 MET LEU ASN GLU LEU PRO GLU PHE GLU ASP TYR VAL VAL SEQRES 59 A 897 LEU THR GLN GLN GLN ASN GLN ASN TYR LYS ILE VAL GLN SEQRES 60 A 897 GLN PHE ASN ASN PHE ASP LYS ALA ILE LEU LEU GLY THR SEQRES 61 A 897 SER THR PHE PHE GLU GLY PHE ASP PHE GLN ALA ASN GLY SEQRES 62 A 897 ILE LYS CYS VAL MET ILE ALA LYS LEU PRO PHE MET ASN SEQRES 63 A 897 LYS HIS ASN ALA LYS TYR TRP LEU MET ASP SER GLU PHE SEQRES 64 A 897 THR SER THR PHE LYS GLU TYR VAL LEU PRO ASP ALA VAL SEQRES 65 A 897 THR ARG PHE ARG GLN GLY LEU GLY ARG LEU ILE ARG ASN SEQRES 66 A 897 GLU ASN ASP ARG GLY ILE ILE VAL SER PHE ASP ASP ARG SEQRES 67 A 897 LEU ILE ASN SER ASN TYR LYS ASN PHE PHE GLU GLN THR SEQRES 68 A 897 LEU GLU ASN TYR ARG GLN LYS LYS GLY ASP ILE GLN GLN SEQRES 69 A 897 PHE GLY LYS LEU LEU ARG GLN ILE GLN LYS LYS LYS LYS HELIX 1 AA1 PRO A 51 SER A 59 1 9 HELIX 2 AA2 GLU A 61 GLN A 66 5 6 HELIX 3 AA3 TYR A 70 LYS A 83 1 14 HELIX 4 AA4 ASN A 91 CYS A 106 1 16 HELIX 5 AA5 THR A 118 PHE A 126 1 9 HELIX 6 AA6 GLN A 133 HIS A 141 1 9 HELIX 7 AA7 ASP A 152 PHE A 169 1 18 HELIX 8 AA8 LEU A 172 SER A 184 1 13 HELIX 9 AA9 ASP A 190 GLN A 201 1 12 HELIX 10 AB1 SER A 235 GLY A 248 1 14 HELIX 11 AB2 ARG A 252 HIS A 268 1 17 HELIX 12 AB3 GLY A 281 GLU A 296 1 16 HELIX 13 AB4 LYS A 308 LYS A 317 1 10 HELIX 14 AB5 LYS A 317 ASN A 327 1 11 HELIX 15 AB6 SER A 337 TYR A 341 5 5 HELIX 16 AB7 GLY A 345 LYS A 352 1 8 HELIX 17 AB8 ASN A 357 THR A 374 1 18 HELIX 18 AB9 LYS A 385 TYR A 399 1 15 HELIX 19 AC1 TYR A 408 ASN A 415 1 8 HELIX 20 AC2 HIS A 426 ILE A 430 1 5 HELIX 21 AC3 ASN A 436 PHE A 442 5 7 HELIX 22 AC4 ARG A 452 GLN A 460 1 9 HELIX 23 AC5 TYR A 467 GLY A 478 1 12 HELIX 24 AC6 GLU A 483 LEU A 498 1 16 HELIX 25 AC7 ASP A 507 ASP A 535 1 29 HELIX 26 AC8 THR A 554 PHE A 575 1 22 HELIX 27 AC9 HIS A 580 ALA A 606 1 27 HELIX 28 AD1 GLN A 619 SER A 621 5 3 HELIX 29 AD2 ALA A 631 GLN A 639 1 9 HELIX 30 AD3 PHE A 660 GLN A 665 1 6 HELIX 31 AD4 GLN A 683 ASN A 687 1 5 HELIX 32 AD5 ASN A 703 THR A 722 1 20 HELIX 33 AD6 SER A 732 LEU A 746 1 15 HELIX 34 AD7 PRO A 747 GLU A 750 5 4 HELIX 35 AD8 TYR A 763 GLN A 768 1 6 HELIX 36 AD9 ASN A 809 LEU A 814 1 6 HELIX 37 AE1 MET A 815 PHE A 819 5 5 HELIX 38 AE2 SER A 821 TYR A 826 1 6 HELIX 39 AE3 TYR A 826 GLY A 840 1 15 HELIX 40 AE4 ASP A 857 SER A 862 1 6 HELIX 41 AE5 TYR A 864 GLN A 870 1 7 HELIX 42 AE6 THR A 871 GLU A 873 5 3 HELIX 43 AE7 ASP A 881 LYS A 894 1 14 SHEET 1 AA1 5 ILE A 36 MET A 43 0 SHEET 2 AA1 5 ILE A 23 VAL A 31 -1 N ILE A 28 O TYR A 40 SHEET 3 AA1 5 TYR A 6 THR A 13 -1 N GLU A 12 O ILE A 24 SHEET 4 AA1 5 ILE A 86 ALA A 89 1 O ILE A 86 N ALA A 7 SHEET 5 AA1 5 VAL A 115 ASP A 117 1 O ILE A 116 N PHE A 87 SHEET 1 AA2 2 LYS A 213 PHE A 214 0 SHEET 2 AA2 2 ILE A 217 ILE A 218 -1 O ILE A 217 N PHE A 214 SHEET 1 AA3 7 ALA A 332 LEU A 334 0 SHEET 2 AA3 7 ILE A 421 ASN A 425 1 O ILE A 423 N LEU A 333 SHEET 3 AA3 7 VAL A 301 THR A 305 1 N VAL A 301 O GLY A 422 SHEET 4 AA3 7 ASP A 444 ASP A 448 1 O ASP A 444 N MET A 302 SHEET 5 AA3 7 SER A 646 SER A 651 1 O ILE A 650 N VAL A 447 SHEET 6 AA3 7 ALA A 272 ALA A 276 1 N ILE A 274 O PHE A 649 SHEET 7 AA3 7 ASN A 674 VAL A 678 1 O ASN A 674 N MET A 273 SHEET 1 AA4 5 THR A 462 SER A 466 0 SHEET 2 AA4 5 ILE A 623 LYS A 628 -1 O VAL A 627 N ASN A 463 SHEET 3 AA4 5 SER A 610 ILE A 614 -1 N SER A 613 O ARG A 624 SHEET 4 AA4 5 HIS A 547 VAL A 549 -1 N HIS A 547 O ILE A 614 SHEET 5 AA4 5 TYR A 539 ASP A 540 -1 N TYR A 539 O ASN A 548 SHEET 1 AA5 7 VAL A 753 THR A 756 0 SHEET 2 AA5 7 ILE A 776 THR A 780 1 O GLY A 779 N LEU A 755 SHEET 3 AA5 7 CYS A 726 LEU A 729 1 N VAL A 728 O LEU A 778 SHEET 4 AA5 7 LYS A 795 ILE A 799 1 O MET A 798 N LEU A 727 SHEET 5 AA5 7 GLY A 850 SER A 854 1 O ILE A 851 N LYS A 795 SHEET 6 AA5 7 THR A 688 PHE A 691 1 N PHE A 691 O ILE A 852 SHEET 7 AA5 7 GLN A 877 LYS A 878 1 O LYS A 878 N VAL A 690 CRYST1 229.170 229.170 128.030 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007811 0.00000 MASTER 370 0 0 43 26 0 0 6 7432 2 0 70 END