HEADER HYDROLASE 22-JUN-24 9IJB TITLE CRYSTAL STRUCTURE AND FUNCTION ANALYSIS OF A HIGHLY POTENTIAL DRUG TITLE 2 TARGET 6-PHOSPHOGLUCONATE DEHYDROGENASE IN MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE, NAD(+)-DEPENDENT, COMPND 3 DECARBOXYLATING; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: 6-PHOSPHOGLUCONATE DEHYDROGENASE,DECARBOXYLATING; COMPND 6 EC: 1.1.1.343,1.1.1.44; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: 6-PHOSPHOGLUCONATE DEHYDROGENASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GND2, GNTZ, A4S10_01196, ERS007681_00218, ERS007718_03264, SOURCE 5 ERS007720_01707, ERS007741_00547, ERS027646_01529, ERS027661_00118, SOURCE 6 ERS035788_00611, ERS053720_03175, SAMEA2683035_02610; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TECRAMER, DEHYDROGENASE ENZYME, NAD BINDING, PENTOSE PHOSPHATE KEYWDS 2 PATHWAY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.WANG,X.Q.REN,T.LI,R.D.ZHANG REVDAT 1 03-JUL-24 9IJB 0 JRNL AUTH Y.Z.WANG,X.Q.REN,T.LI,R.D.ZHANG JRNL TITL CRYSTAL STRUCTURE AND FUNCTION ANALYSIS OF A POTENTIAL DRUG JRNL TITL 2 TARGET 6-PHOSPHOGLUCONATE DEHYDROGENASE IN MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.384 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.904 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8115 - 6.4163 0.99 2910 142 0.1887 0.2229 REMARK 3 2 6.4163 - 5.1043 1.00 2818 132 0.2104 0.2692 REMARK 3 3 5.1043 - 4.4625 1.00 2806 129 0.1780 0.2440 REMARK 3 4 4.4625 - 4.0560 1.00 2772 146 0.1673 0.2014 REMARK 3 5 4.0560 - 3.7661 1.00 2755 158 0.1779 0.2552 REMARK 3 6 3.7661 - 3.5446 1.00 2726 142 0.1828 0.2162 REMARK 3 7 3.5446 - 3.3674 1.00 2747 155 0.1948 0.2411 REMARK 3 8 3.3674 - 3.2211 1.00 2710 153 0.2245 0.2917 REMARK 3 9 3.2211 - 3.0973 1.00 2734 126 0.2391 0.2816 REMARK 3 10 3.0973 - 2.9905 1.00 2727 151 0.2421 0.2879 REMARK 3 11 2.9905 - 2.8971 1.00 2717 141 0.2428 0.3082 REMARK 3 12 2.8971 - 2.8144 1.00 2733 141 0.2462 0.3727 REMARK 3 13 2.8144 - 2.7405 0.93 2524 124 0.2680 0.3271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.347 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 10040 REMARK 3 ANGLE : 1.493 13606 REMARK 3 CHIRALITY : 0.155 1487 REMARK 3 PLANARITY : 0.008 1812 REMARK 3 DIHEDRAL : 24.801 3657 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.3120 28.1560 0.7315 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.3987 REMARK 3 T33: 0.3389 T12: -0.0195 REMARK 3 T13: -0.0209 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.8162 L22: 2.5326 REMARK 3 L33: 1.8938 L12: -0.9247 REMARK 3 L13: 0.0164 L23: -0.5079 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: -0.4456 S13: -0.1390 REMARK 3 S21: 0.0175 S22: 0.1111 S23: 0.3119 REMARK 3 S31: 0.0144 S32: -0.0146 S33: -0.0142 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9IJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 24-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1300048907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6XEQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG3350, 100 MM DI-SODIUM REMARK 280 MALONATE, 100 MM TRIS (PH 8.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.99550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.51150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.62300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.51150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.99550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.62300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 220 REMARK 465 GLN A 221 REMARK 465 HIS A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 ALA A 225 REMARK 465 GLU A 226 REMARK 465 VAL B 220 REMARK 465 GLN B 221 REMARK 465 HIS B 222 REMARK 465 GLY B 223 REMARK 465 ASP B 224 REMARK 465 ALA B 225 REMARK 465 GLU B 226 REMARK 465 THR B 227 REMARK 465 GLY B 332 REMARK 465 GLY B 333 REMARK 465 HIS B 334 REMARK 465 ALA B 335 REMARK 465 GLU B 336 REMARK 465 LYS B 337 REMARK 465 PRO B 338 REMARK 465 ALA B 339 REMARK 465 ASN B 340 REMARK 465 GLN C 221 REMARK 465 HIS C 222 REMARK 465 GLY C 223 REMARK 465 ASP C 224 REMARK 465 ALA C 225 REMARK 465 GLU C 226 REMARK 465 PRO C 338 REMARK 465 ALA C 339 REMARK 465 ASN C 340 REMARK 465 MET D 1 REMARK 465 GLN D 2 REMARK 465 GLN D 221 REMARK 465 HIS D 222 REMARK 465 GLY D 223 REMARK 465 ASP D 224 REMARK 465 ALA D 225 REMARK 465 GLU D 226 REMARK 465 GLY D 332 REMARK 465 GLY D 333 REMARK 465 HIS D 334 REMARK 465 ALA D 335 REMARK 465 GLU D 336 REMARK 465 LYS D 337 REMARK 465 PRO D 338 REMARK 465 ALA D 339 REMARK 465 ASN D 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 50 CB GLU B 53 1.13 REMARK 500 CB LEU A 109 CD1 ILE A 114 1.43 REMARK 500 O ARG B 62 CB ASP B 89 1.44 REMARK 500 CB LEU B 109 CD1 ILE B 114 1.52 REMARK 500 OG SER D 122 O HOH D 401 1.52 REMARK 500 O GLU D 86 OD1 ASP D 89 1.62 REMARK 500 OG SER D 55 O THR D 84 1.63 REMARK 500 CG1 VAL B 63 O ILE B 90 1.66 REMARK 500 CA GLY B 4 CG2 VAL B 64 1.69 REMARK 500 CD1 LEU B 8 CE MET B 39 1.70 REMARK 500 CG ARG D 62 OD2 ASP D 89 1.70 REMARK 500 OG SER B 50 CA GLU B 53 1.71 REMARK 500 O VAL D 36 O ALA D 38 1.76 REMARK 500 CD1 ILE B 90 NH2 ARG B 145 1.76 REMARK 500 CB ARG D 62 CB ASP D 89 1.77 REMARK 500 N GLY B 4 CG2 VAL B 64 1.79 REMARK 500 NZ LYS C 21 OD1 ASP C 43 1.80 REMARK 500 OG SER B 55 CG2 THR B 84 1.80 REMARK 500 CB ARG D 62 OD2 ASP D 89 1.83 REMARK 500 OG SER B 50 N GLU B 53 1.86 REMARK 500 NH2 ARG C 62 OE2 GLU C 86 1.90 REMARK 500 O GLU D 234 NE2 GLN D 237 1.90 REMARK 500 O PRO B 33 N LYS B 37 1.91 REMARK 500 O ARG D 57 NH1 ARG D 62 1.91 REMARK 500 CE MET B 67 C GLY B 94 1.93 REMARK 500 CG LEU B 109 CD1 ILE B 114 1.94 REMARK 500 CE MET B 67 O GLY B 94 1.95 REMARK 500 CG2 THR B 45 O HOH B 425 1.95 REMARK 500 O LEU B 85 OD1 ASP B 89 1.95 REMARK 500 C VAL D 36 O ALA D 38 1.98 REMARK 500 O MET B 1 N ASP B 25 1.98 REMARK 500 CG1 VAL B 48 OE2 GLU B 53 2.00 REMARK 500 ND2 ASN C 194 OE1 GLU C 285 2.03 REMARK 500 O GLU B 42 OG1 THR B 45 2.05 REMARK 500 NH2 ARG C 166 OE2 GLU D 244 2.05 REMARK 500 CG1 ILE B 90 CB HIS B 115 2.06 REMARK 500 C GLY B 4 CG2 VAL B 64 2.07 REMARK 500 CB ARG D 62 CG ASP D 89 2.08 REMARK 500 OE1 GLU C 147 OH TYR C 177 2.08 REMARK 500 O VAL B 77 CD1 LEU B 81 2.10 REMARK 500 O SER A 253 NH2 ARG B 130 2.10 REMARK 500 O ASP D 43 CG2 THR D 45 2.12 REMARK 500 NH2 ARG A 212 OD1 ASP A 272 2.14 REMARK 500 O ALA A 306 O HOH A 401 2.15 REMARK 500 CD2 LEU D 8 O HOH D 404 2.16 REMARK 500 CG2 VAL B 63 N ILE B 90 2.16 REMARK 500 OE2 GLU C 244 NH2 ARG D 166 2.16 REMARK 500 CD1 ILE B 90 CB ALA B 142 2.17 REMARK 500 O GLY B 4 CG2 VAL B 64 2.17 REMARK 500 N GLY A 168 O HOH A 402 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 57 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 61 C - N - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 PRO B 61 C - N - CD ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO C 61 C - N - CD ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -32.36 -35.64 REMARK 500 ARG A 57 7.99 -65.67 REMARK 500 THR A 74 -70.72 -52.81 REMARK 500 LEU A 81 -16.60 -48.38 REMARK 500 ASN A 83 -76.65 -96.17 REMARK 500 THR A 84 -21.21 -32.48 REMARK 500 ASP A 89 -177.38 -66.96 REMARK 500 PRO A 182 -166.06 -72.83 REMARK 500 HIS B 31 -2.80 -49.29 REMARK 500 ASP B 43 133.94 -33.54 REMARK 500 SER B 55 -72.39 -54.05 REMARK 500 THR B 84 -177.06 151.19 REMARK 500 LEU B 85 -2.34 81.45 REMARK 500 GLU B 86 -131.74 53.71 REMARK 500 LYS B 112 -179.35 171.37 REMARK 500 PRO B 182 -169.98 -71.01 REMARK 500 ASP C 167 124.79 -171.77 REMARK 500 ALA D 35 -137.20 -80.46 REMARK 500 ARG D 44 17.86 43.66 REMARK 500 SER D 59 174.52 81.32 REMARK 500 PRO D 182 -160.19 -67.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 436 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 437 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 433 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C 433 DISTANCE = 6.01 ANGSTROMS DBREF1 9IJB A 1 340 UNP A0A045IPA0_MYCTX DBREF2 9IJB A A0A045IPA0 1 340 DBREF1 9IJB B 1 340 UNP A0A045IPA0_MYCTX DBREF2 9IJB B A0A045IPA0 1 340 DBREF1 9IJB C 1 340 UNP A0A045IPA0_MYCTX DBREF2 9IJB C A0A045IPA0 1 340 DBREF1 9IJB D 1 340 UNP A0A045IPA0_MYCTX DBREF2 9IJB D A0A045IPA0 1 340 SEQRES 1 A 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 A 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 A 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 A 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 A 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 A 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 A 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 A 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 A 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 A 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 A 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 A 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 A 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 A 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 A 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 A 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 A 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 A 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 A 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 A 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 A 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 A 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 A 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 A 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 A 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 A 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 A 340 ALA ASN SEQRES 1 B 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 B 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 B 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 B 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 B 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 B 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 B 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 B 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 B 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 B 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 B 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 B 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 B 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 B 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 B 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 B 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 B 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 B 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 B 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 B 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 B 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 B 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 B 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 B 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 B 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 B 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 B 340 ALA ASN SEQRES 1 C 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 C 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 C 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 C 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 C 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 C 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 C 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 C 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 C 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 C 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 C 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 C 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 C 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 C 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 C 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 C 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 C 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 C 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 C 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 C 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 C 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 C 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 C 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 C 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 C 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 C 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 C 340 ALA ASN SEQRES 1 D 340 MET GLN LEU GLY MET ILE GLY LEU GLY ARG MET GLY ALA SEQRES 2 D 340 ASN ILE VAL ARG ARG LEU ALA LYS GLY GLY HIS ASP CYS SEQRES 3 D 340 VAL VAL TYR ASP HIS ASP PRO ASP ALA VAL LYS ALA MET SEQRES 4 D 340 ALA GLY GLU ASP ARG THR THR GLY VAL ALA SER LEU ARG SEQRES 5 D 340 GLU LEU SER GLN ARG LEU SER ALA PRO ARG VAL VAL TRP SEQRES 6 D 340 VAL MET VAL PRO ALA GLY ASN ILE THR THR ALA VAL ILE SEQRES 7 D 340 GLU GLU LEU ALA ASN THR LEU GLU ALA GLY ASP ILE VAL SEQRES 8 D 340 ILE ASP GLY GLY ASN THR TYR TYR ARG ASP ASP LEU ARG SEQRES 9 D 340 HIS GLU LYS LEU LEU PHE LYS LYS GLY ILE HIS LEU LEU SEQRES 10 D 340 ASP CYS GLY THR SER GLY GLY VAL TRP GLY ARG GLU ARG SEQRES 11 D 340 GLY TYR CYS LEU MET ILE GLY GLY ASP GLY ASP ALA PHE SEQRES 12 D 340 ALA ARG ALA GLU PRO ILE PHE ALA THR VAL ALA PRO GLY SEQRES 13 D 340 VAL ALA ALA ALA PRO ARG THR PRO GLY ARG ASP GLY GLU SEQRES 14 D 340 VAL ALA PRO SER GLU GLN GLY TYR LEU HIS CYS GLY PRO SEQRES 15 D 340 CYS GLY SER GLY HIS PHE VAL LYS MET VAL HIS ASN GLY SEQRES 16 D 340 ILE GLU TYR GLY MET MET ALA SER LEU ALA GLU GLY LEU SEQRES 17 D 340 ASN ILE LEU ARG ASN ALA ASP VAL GLY THR ARG VAL GLN SEQRES 18 D 340 HIS GLY ASP ALA GLU THR ALA PRO LEU PRO ASN PRO GLU SEQRES 19 D 340 CYS TYR GLN TYR ASP PHE ASP ILE PRO GLU VAL ALA GLU SEQRES 20 D 340 VAL TRP ARG ARG GLY SER VAL ILE GLY SER TRP LEU LEU SEQRES 21 D 340 ASP LEU THR ALA ILE ALA LEU ARG GLU SER PRO ASP LEU SEQRES 22 D 340 ALA GLU PHE SER GLY ARG VAL SER ASP SER GLY GLU GLY SEQRES 23 D 340 ARG TRP THR ALA ILE ALA ALA ILE ASP GLU GLY VAL PRO SEQRES 24 D 340 ALA PRO VAL LEU THR THR ALA LEU GLN SER ARG PHE ALA SEQRES 25 D 340 SER ARG ASP LEU ASP ASP PHE ALA ASN LYS ALA LEU SER SEQRES 26 D 340 ALA MET ARG LYS GLN PHE GLY GLY HIS ALA GLU LYS PRO SEQRES 27 D 340 ALA ASN FORMUL 5 HOH *123(H2 O) HELIX 1 AA1 GLY A 9 GLY A 22 1 14 HELIX 2 AA2 ASP A 32 GLY A 41 1 10 HELIX 3 AA3 SER A 50 LEU A 58 1 9 HELIX 4 AA4 GLY A 71 LEU A 85 1 15 HELIX 5 AA5 TYR A 98 LYS A 112 1 15 HELIX 6 AA6 GLY A 123 GLU A 129 5 7 HELIX 7 AA7 ASP A 139 ALA A 154 1 16 HELIX 8 AA8 GLY A 156 ALA A 160 5 5 HELIX 9 AA9 ALA A 171 GLN A 175 5 5 HELIX 10 AB1 GLY A 184 ASN A 213 1 30 HELIX 11 AB2 ASP A 241 TRP A 249 1 9 HELIX 12 AB3 SER A 257 SER A 270 1 14 HELIX 13 AB4 GLY A 284 GLY A 297 1 14 HELIX 14 AB5 ALA A 300 ARG A 314 1 15 HELIX 15 AB6 ASP A 317 GLY A 333 1 17 HELIX 16 AB7 GLY B 9 LYS B 21 1 13 HELIX 17 AB8 ASP B 32 LYS B 37 1 6 HELIX 18 AB9 SER B 50 LEU B 58 1 9 HELIX 19 AC1 GLY B 71 LEU B 81 1 11 HELIX 20 AC2 TYR B 98 LYS B 111 1 14 HELIX 21 AC3 GLY B 123 VAL B 125 5 3 HELIX 22 AC4 TRP B 126 GLY B 131 1 6 HELIX 23 AC5 ASP B 139 ALA B 154 1 16 HELIX 24 AC6 GLY B 156 ALA B 160 5 5 HELIX 25 AC7 PRO B 172 GLN B 175 5 4 HELIX 26 AC8 GLY B 184 ASN B 213 1 30 HELIX 27 AC9 ASN B 232 TYR B 236 5 5 HELIX 28 AD1 ASP B 241 TRP B 249 1 9 HELIX 29 AD2 SER B 257 SER B 270 1 14 HELIX 30 AD3 GLY B 284 GLU B 296 1 13 HELIX 31 AD4 ALA B 300 ARG B 314 1 15 HELIX 32 AD5 ASP B 317 PHE B 331 1 15 HELIX 33 AD6 GLY C 9 GLY C 22 1 14 HELIX 34 AD7 ASP C 32 MET C 39 1 8 HELIX 35 AD8 SER C 50 ARG C 57 1 8 HELIX 36 AD9 GLY C 71 LEU C 85 1 15 HELIX 37 AE1 TYR C 98 LYS C 111 1 14 HELIX 38 AE2 GLY C 123 VAL C 125 5 3 HELIX 39 AE3 TRP C 126 GLY C 131 1 6 HELIX 40 AE4 ASP C 139 ALA C 154 1 16 HELIX 41 AE5 GLY C 156 ALA C 160 5 5 HELIX 42 AE6 ALA C 171 GLY C 176 5 6 HELIX 43 AE7 GLY C 184 ASN C 213 1 30 HELIX 44 AE8 ALA C 214 THR C 218 5 5 HELIX 45 AE9 ASN C 232 TYR C 236 5 5 HELIX 46 AF1 ASP C 241 TRP C 249 1 9 HELIX 47 AF2 SER C 257 SER C 270 1 14 HELIX 48 AF3 GLY C 284 GLY C 297 1 14 HELIX 49 AF4 ALA C 300 ARG C 314 1 15 HELIX 50 AF5 ASP C 317 GLY C 333 1 17 HELIX 51 AF6 GLY D 9 GLY D 23 1 15 HELIX 52 AF7 SER D 50 GLN D 56 1 7 HELIX 53 AF8 GLY D 71 LEU D 85 1 15 HELIX 54 AF9 TYR D 98 LYS D 112 1 15 HELIX 55 AG1 GLY D 123 VAL D 125 5 3 HELIX 56 AG2 TRP D 126 GLY D 131 1 6 HELIX 57 AG3 ASP D 139 ALA D 154 1 16 HELIX 58 AG4 GLY D 156 ALA D 160 5 5 HELIX 59 AG5 ALA D 171 GLY D 176 1 6 HELIX 60 AG6 GLY D 184 ASN D 213 1 30 HELIX 61 AG7 ASN D 232 GLN D 237 5 6 HELIX 62 AG8 ASP D 241 TRP D 249 1 9 HELIX 63 AG9 SER D 257 SER D 270 1 14 HELIX 64 AH1 GLY D 284 GLY D 297 1 14 HELIX 65 AH2 ALA D 300 ARG D 314 1 15 HELIX 66 AH3 ASP D 317 PHE D 331 1 15 SHEET 1 AA1 7 ASP A 25 TYR A 29 0 SHEET 2 AA1 7 GLN A 2 ILE A 6 1 N LEU A 3 O ASP A 25 SHEET 3 AA1 7 VAL A 63 VAL A 66 1 O TRP A 65 N GLY A 4 SHEET 4 AA1 7 ILE A 90 ASP A 93 1 O ILE A 92 N VAL A 66 SHEET 5 AA1 7 HIS A 115 SER A 122 1 O LEU A 117 N VAL A 91 SHEET 6 AA1 7 CYS A 133 GLY A 137 -1 O MET A 135 N GLY A 120 SHEET 7 AA1 7 TYR A 177 GLY A 181 1 O CYS A 180 N ILE A 136 SHEET 1 AA2 8 THR B 45 GLY B 47 0 SHEET 2 AA2 8 ASP B 25 TYR B 29 1 N CYS B 26 O THR B 46 SHEET 3 AA2 8 GLN B 2 ILE B 6 1 N LEU B 3 O ASP B 25 SHEET 4 AA2 8 VAL B 64 VAL B 66 1 O TRP B 65 N ILE B 6 SHEET 5 AA2 8 ILE B 90 ASP B 93 1 O ILE B 92 N VAL B 64 SHEET 6 AA2 8 HIS B 115 THR B 121 1 O HIS B 115 N VAL B 91 SHEET 7 AA2 8 LEU B 134 GLY B 137 -1 O MET B 135 N GLY B 120 SHEET 8 AA2 8 TYR B 177 GLY B 181 1 O CYS B 180 N ILE B 136 SHEET 1 AA3 8 THR C 45 GLY C 47 0 SHEET 2 AA3 8 ASP C 25 TYR C 29 1 N VAL C 28 O THR C 46 SHEET 3 AA3 8 GLN C 2 ILE C 6 1 N MET C 5 O VAL C 27 SHEET 4 AA3 8 VAL C 63 VAL C 66 1 O TRP C 65 N ILE C 6 SHEET 5 AA3 8 ILE C 90 ASP C 93 1 O ILE C 92 N VAL C 64 SHEET 6 AA3 8 HIS C 115 SER C 122 1 O CYS C 119 N ASP C 93 SHEET 7 AA3 8 CYS C 133 GLY C 137 -1 O GLY C 137 N ASP C 118 SHEET 8 AA3 8 HIS C 179 GLY C 181 1 O CYS C 180 N ILE C 136 SHEET 1 AA4 8 THR D 45 THR D 46 0 SHEET 2 AA4 8 CYS D 26 TYR D 29 1 N CYS D 26 O THR D 46 SHEET 3 AA4 8 GLY D 4 ILE D 6 1 N MET D 5 O VAL D 27 SHEET 4 AA4 8 VAL D 63 VAL D 66 1 O TRP D 65 N GLY D 4 SHEET 5 AA4 8 ILE D 90 ASP D 93 1 O ILE D 92 N VAL D 64 SHEET 6 AA4 8 HIS D 115 SER D 122 1 O HIS D 115 N VAL D 91 SHEET 7 AA4 8 CYS D 133 GLY D 138 -1 O MET D 135 N GLY D 120 SHEET 8 AA4 8 TYR D 177 GLY D 181 1 O CYS D 180 N ILE D 136 CISPEP 1 ALA A 60 PRO A 61 0 -0.29 CISPEP 2 ALA B 60 PRO B 61 0 1.09 CISPEP 3 ALA C 60 PRO C 61 0 0.49 CISPEP 4 ALA D 38 MET D 39 0 2.89 CISPEP 5 GLY D 41 GLU D 42 0 -4.21 CRYST1 95.991 107.246 137.023 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007298 0.00000