HEADER OXIDOREDUCTASE 06-JUL-24 9INA TITLE CRYSTAL STRUCTURE OF ISOPHTHALATE DIOXYGENASE FROM COMAMONAS TITLE 2 TESTOSTERONI KF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIESKE (2FE-2S) DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOPHTHALATE DIOXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI KF-1; SOURCE 3 ORGANISM_TAXID: 399795; SOURCE 4 GENE: CTESDRAFT_PD2139; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DIOXYGENASE, BACTERIAL PROTEIN, METALLOPROTEIN, RIESKE DOMAIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MAHTO,P.KUMAR REVDAT 3 01-OCT-25 9INA 1 JRNL REVDAT 2 20-AUG-25 9INA 1 JRNL REVDAT 1 09-JUL-25 9INA 0 JRNL AUTH J.K.MAHTO,I.MISHRA,K.JANGID,P.KUMAR JRNL TITL STRUCTURE-GUIDED ENGINEERING OF AN AROMATIC JRNL TITL 2 RING-HYDROXYLATING DIOXYGENASE FOR BROAD-SPECTRUM PHTHALATE JRNL TITL 3 DEGRADATION. JRNL REF J.BACTERIOL. V. 207 22125 2025 JRNL REFN ESSN 1098-5530 JRNL PMID 40793770 JRNL DOI 10.1128/JB.00221-25 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 106.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.337 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.812 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3632 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3260 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4929 ; 2.034 ; 1.832 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7527 ; 0.675 ; 1.764 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 8.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ; 9.763 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;19.067 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4415 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 873 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1763 ; 5.935 ; 7.445 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1763 ; 5.910 ; 7.446 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2202 ; 8.027 ;13.411 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2203 ; 8.026 ;13.414 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 7.904 ; 8.098 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1866 ; 7.913 ; 8.103 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2724 ;11.034 ;14.543 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3890 ;12.044 ;73.430 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3891 ;12.048 ;73.430 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9INA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 106.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M POTASSIUM REMARK 280 THIOCYANATE, 0.1 M TRIS-HCL PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 75.37000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 75.37000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 75.37000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 75.37000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 75.37000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 75.37000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 75.37000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 75.37000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 75.37000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 75.37000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 75.37000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 75.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 75.37000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 75.37000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 75.37000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -75.37000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 113 O LEU A 355 6555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 151 CD PRO A 151 N -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A -2 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 MET A 31 CG - SD - CE ANGL. DEV. = 15.0 DEGREES REMARK 500 PRO A 151 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -61.86 -93.94 REMARK 500 ASN A 57 -168.55 -76.73 REMARK 500 HIS A 71 -80.67 -61.82 REMARK 500 SER A 107 71.53 -176.04 REMARK 500 PRO A 151 -38.76 -37.08 REMARK 500 TYR A 162 57.67 -90.83 REMARK 500 ASP A 174 80.88 -154.39 REMARK 500 TYR A 180 -79.44 -107.83 REMARK 500 HIS A 192 -26.63 -140.31 REMARK 500 ASP A 204 110.69 -162.78 REMARK 500 TRP A 242 32.59 -142.30 REMARK 500 ASP A 263 -151.82 -144.01 REMARK 500 PHE A 304 -1.34 71.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 24 0.10 SIDE CHAIN REMARK 500 ARG A 87 0.08 SIDE CHAIN REMARK 500 ARG A 124 0.12 SIDE CHAIN REMARK 500 ARG A 159 0.08 SIDE CHAIN REMARK 500 ARG A 183 0.18 SIDE CHAIN REMARK 500 ARG A 410 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 FES A 502 S1 108.3 REMARK 620 3 FES A 502 S2 111.6 104.6 REMARK 620 4 CYS A 88 SG 108.4 106.2 117.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 FES A 502 S1 108.6 REMARK 620 3 FES A 502 S2 108.7 101.3 REMARK 620 4 HIS A 91 ND1 95.7 114.1 127.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 177 NE2 REMARK 620 2 HIS A 182 NE2 89.6 REMARK 620 3 ASP A 337 OD2 104.9 87.5 REMARK 620 4 HOH A 606 O 130.9 98.3 123.7 REMARK 620 N 1 2 3 DBREF 9INA A 1 424 UNP B7WRK8 B7WRK8_COMTK 1 424 SEQADV 9INA MET A -22 UNP B7WRK8 INITIATING METHIONINE SEQADV 9INA GLY A -21 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA SER A -20 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA SER A -19 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -18 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -17 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -16 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -15 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -14 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -13 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA SER A -12 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA SER A -11 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA GLU A -10 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA ASN A -9 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA LEU A -8 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA TYR A -7 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA PHE A -6 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA GLN A -5 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA GLY A -4 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA HIS A -3 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA MET A -2 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA ALA A -1 UNP B7WRK8 EXPRESSION TAG SEQADV 9INA SER A 0 UNP B7WRK8 EXPRESSION TAG SEQRES 1 A 447 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 447 ASN LEU TYR PHE GLN GLY HIS MET ALA SER MET ASN LYS SEQRES 3 A 447 GLU MET SER GLU THR LEU THR ARG VAL GLY PRO ASN THR SEQRES 4 A 447 ARG MET GLY ASN LEU LEU ARG ARG TYR TRP VAL PRO ALA SEQRES 5 A 447 LEU MET SER SER GLU ILE ALA GLU ALA ASP GLY PRO GLN SEQRES 6 A 447 VAL ARG VAL GLN LEU LEU GLY GLU LYS LEU LEU ALA PHE SEQRES 7 A 447 ARG ASN THR ASP GLY LYS ALA CYS LEU ILE SER GLU PHE SEQRES 8 A 447 CYS SER HIS ARG GLY VAL SER LEU TYR PHE GLY ARG ASN SEQRES 9 A 447 GLU GLU ASN GLY ILE ARG CYS ALA TYR HIS GLY VAL LYS SEQRES 10 A 447 PHE ASP GLY ASP GLY GLN CYS VAL ASP VAL PRO SER SER SEQRES 11 A 447 PRO GLN SER CYS ALA ARG MET HIS ILE LYS GLY TYR PRO SEQRES 12 A 447 CYS VAL GLU ARG GLY GLY ILE VAL TRP THR TYR MET GLY SEQRES 13 A 447 PRO GLU GLU HIS LYS PRO SER PRO PRO GLU LEU GLU TRP SEQRES 14 A 447 CYS THR LEU PRO PRO GLU HIS VAL PHE VAL SER LYS ARG SEQRES 15 A 447 LEU GLN TYR SER ASN TRP LEU GLN ALA MET GLU GLY GLY SEQRES 16 A 447 ILE ASP THR ALA HIS VAL SER TYR VAL HIS ARG PHE GLU SEQRES 17 A 447 VAL ASP THR ASP PRO MET HIS GLN GLY VAL LYS ALA LEU SEQRES 18 A 447 ASP TYR ILE LYS ALA ASP GLY ASN VAL LYS PHE GLU ILE SEQRES 19 A 447 GLU GLN THR PRO PHE GLY LEU SER LEU PHE GLY ARG ARG SEQRES 20 A 447 ASN GLY GLU PRO ASP SER TYR TYR TRP ARG ILE THR GLN SEQRES 21 A 447 TRP LEU PHE PRO TRP PHE THR LEU ILE ALA PRO PHE GLY SEQRES 22 A 447 ASN HIS ALA LEU GLY GLY HIS VAL TRP VAL PRO ILE ASP SEQRES 23 A 447 ASP HIS ASN CYS TRP ALA TRP SER ILE ASN TRP GLN PRO SEQRES 24 A 447 ASP GLN PRO LEU THR LYS GLU GLU ARG GLN SER MET GLU SEQRES 25 A 447 GLU GLY LYS GLY ILE HIS VAL GLU TYR GLU GLU PRO GLY SEQRES 26 A 447 SER PHE ILE PRO LYS ALA ASN ARG ASN ASN ASP TYR GLY SEQRES 27 A 447 MET ASP ARG VAL ALA GLN ARG GLU GLU ARG SER TYR SER SEQRES 28 A 447 GLY ILE PHE GLY PHE SER ALA GLN ASP TYR SER LEU GLN SEQRES 29 A 447 GLU SER MET GLY PRO ILE GLN ASP HIS ALA ALA GLU ARG SEQRES 30 A 447 LEU LEU PRO THR ASP LYS ALA ILE VAL MET ALA ARG ARG SEQRES 31 A 447 MET LEU ASN GLU ALA ALA LEU GLY LEU GLU GLN GLY GLU SEQRES 32 A 447 THR PRO PRO ALA LEU ASP ALA SER GLU GLN HIS VAL ARG SEQRES 33 A 447 PRO ALA GLY VAL LEU LEU PRO ARG ASP GLN ASP PRO VAL SEQRES 34 A 447 ALA TRP ALA ARG GLU GLU LEU ALA ASP ALA THR LYS LYS SEQRES 35 A 447 PRO VAL PHE SER LEU HET FE2 A 501 1 HET FES A 502 4 HETNAM FE2 FE (II) ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FE2 FE 2+ FORMUL 3 FES FE2 S2 FORMUL 4 HOH *7(H2 O) HELIX 1 AA1 ASN A 2 ARG A 11 1 10 HELIX 2 AA2 THR A 16 ARG A 24 1 9 HELIX 3 AA3 SER A 33 ALA A 36 5 4 HELIX 4 AA4 SER A 75 GLY A 79 5 5 HELIX 5 AA5 SER A 107 MET A 114 5 8 HELIX 6 AA6 PRO A 134 LYS A 138 5 5 HELIX 7 AA7 LEU A 144 LEU A 149 1 6 HELIX 8 AA8 PRO A 150 GLU A 152 5 3 HELIX 9 AA9 ASN A 164 GLY A 171 1 8 HELIX 10 AB1 GLY A 172 ILE A 173 5 2 HELIX 11 AB2 ASP A 174 TYR A 180 5 7 HELIX 12 AB3 PHE A 184 ASP A 189 1 6 HELIX 13 AB4 LYS A 196 ALA A 203 1 8 HELIX 14 AB5 THR A 281 GLU A 290 1 10 HELIX 15 AB6 ASN A 312 MET A 316 5 5 HELIX 16 AB7 ASP A 317 GLU A 323 1 7 HELIX 17 AB8 GLY A 332 SER A 343 1 12 HELIX 18 AB9 LEU A 356 THR A 358 5 3 HELIX 19 AC1 ASP A 359 GLN A 378 1 20 HELIX 20 AC2 ASP A 386 HIS A 391 5 6 HELIX 21 AC3 ASP A 404 LEU A 413 1 10 SHEET 1 AA1 2 TYR A -7 PHE A -6 0 SHEET 2 AA1 2 HIS A -3 MET A -2 -1 O HIS A -3 N PHE A -6 SHEET 1 AA2 3 VAL A 27 MET A 31 0 SHEET 2 AA2 3 ILE A 127 THR A 130 -1 O VAL A 128 N LEU A 30 SHEET 3 AA2 3 CYS A 121 ARG A 124 -1 N VAL A 122 O TRP A 129 SHEET 1 AA3 4 VAL A 43 LEU A 47 0 SHEET 2 AA3 4 GLU A 50 ARG A 56 -1 O LEU A 52 N VAL A 45 SHEET 3 AA3 4 ALA A 62 SER A 66 -1 O CYS A 63 N PHE A 55 SHEET 4 AA3 4 GLY A 118 TYR A 119 -1 O TYR A 119 N LEU A 64 SHEET 1 AA4 4 ARG A 80 ASN A 81 0 SHEET 2 AA4 4 ILE A 86 ARG A 87 -1 O ARG A 87 N ARG A 80 SHEET 3 AA4 4 LYS A 94 PHE A 95 -1 O PHE A 95 N ILE A 86 SHEET 4 AA4 4 CYS A 101 ASP A 103 -1 O VAL A 102 N LYS A 94 SHEET 1 AA5 7 VAL A 154 GLN A 161 0 SHEET 2 AA5 7 CYS A 267 TRP A 274 -1 O ALA A 269 N ARG A 159 SHEET 3 AA5 7 LEU A 254 PRO A 261 -1 N GLY A 256 O ILE A 272 SHEET 4 AA5 7 PHE A 243 ILE A 246 -1 N ILE A 246 O GLY A 255 SHEET 5 AA5 7 SER A 230 LEU A 239 -1 N LEU A 239 O PHE A 243 SHEET 6 AA5 7 GLY A 217 ASN A 225 -1 N GLY A 222 O ARG A 234 SHEET 7 AA5 7 LYS A 208 THR A 214 -1 N GLU A 210 O PHE A 221 SHEET 1 AA6 6 VAL A 154 GLN A 161 0 SHEET 2 AA6 6 CYS A 267 TRP A 274 -1 O ALA A 269 N ARG A 159 SHEET 3 AA6 6 LEU A 254 PRO A 261 -1 N GLY A 256 O ILE A 272 SHEET 4 AA6 6 PHE A 243 ILE A 246 -1 N ILE A 246 O GLY A 255 SHEET 5 AA6 6 SER A 230 LEU A 239 -1 N LEU A 239 O PHE A 243 SHEET 6 AA6 6 ALA A 395 PRO A 400 -1 O ALA A 395 N ILE A 235 LINK SG CYS A 69 FE2 FES A 502 1555 1555 2.22 LINK ND1 HIS A 71 FE1 FES A 502 1555 1555 2.05 LINK SG CYS A 88 FE2 FES A 502 1555 1555 2.21 LINK ND1 HIS A 91 FE1 FES A 502 1555 1555 1.96 LINK NE2 HIS A 177 FE FE2 A 501 1555 1555 1.81 LINK NE2 HIS A 182 FE FE2 A 501 1555 1555 2.08 LINK OD2 ASP A 337 FE FE2 A 501 1555 1555 1.83 LINK FE FE2 A 501 O HOH A 606 1555 1555 2.79 CISPEP 1 PHE A 240 PRO A 241 0 -4.73 CRYST1 150.740 150.740 150.740 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006634 0.00000 CONECT 671 3518 CONECT 684 3517 CONECT 824 3518 CONECT 848 3517 CONECT 1523 3516 CONECT 1565 3516 CONECT 2845 3516 CONECT 3516 1523 1565 2845 3526 CONECT 3517 684 848 3519 3520 CONECT 3518 671 824 3519 3520 CONECT 3519 3517 3518 CONECT 3520 3517 3518 CONECT 3526 3516 MASTER 434 0 2 21 26 0 0 6 3526 1 13 35 END