HEADER NUCLEAR PROTEIN 06-JUL-24 9INC TITLE HIGH RESOLUTIONAL CRYSTAL STRUCTURE OF HUMAN H2A.Z-H2B DIMER IN TITLE 2 COMPLEX WITH HUMAN YL1-Z DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H2A.Z; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: H2A/Z; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H2B TYPE 1-J; COMPND 8 CHAIN: B, E; COMPND 9 SYNONYM: HISTONE H2B.1,HISTONE H2B.R,H2B/R; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 72 HOMOLOG; COMPND 13 CHAIN: C, F; COMPND 14 SYNONYM: PROTEIN YL-1,TRANSCRIPTION FACTOR-LIKE 1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H2AZ1, H2AFZ, H2AZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H2BC11, H2BFR, HIST1H2BJ; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: VPS72, TCFL1, YL1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HISTONES AND ITS CHAPERONE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.TAN,Y.LIU,J.J.HONG REVDAT 1 09-JUL-25 9INC 0 JRNL AUTH W.S.TAN,Y.LIU,J.J.HONG JRNL TITL STRUCTURAL BASIS OF HUMAN HISTONE VARIANT H2AZ RECOGNIZED BY JRNL TITL 2 HUMAN YL1 PROVIDING A CONSERVED STRUCTURAL MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487_000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.6000 - 3.6500 1.00 2821 152 0.1774 0.2347 REMARK 3 2 3.6500 - 3.1900 1.00 2807 130 0.2141 0.2424 REMARK 3 3 3.1900 - 2.9000 1.00 2792 150 0.2238 0.2516 REMARK 3 4 2.9000 - 2.6900 1.00 2780 139 0.2279 0.2838 REMARK 3 5 2.6900 - 2.5300 1.00 2756 139 0.2143 0.2771 REMARK 3 6 2.5300 - 2.4100 1.00 2781 147 0.2123 0.2550 REMARK 3 7 2.4100 - 2.3000 1.00 2782 134 0.2151 0.2366 REMARK 3 8 2.3000 - 2.2100 0.96 2623 149 0.3446 0.4422 REMARK 3 9 2.2100 - 2.1400 1.00 2740 145 0.2518 0.2855 REMARK 3 10 2.1400 - 2.0700 0.99 2750 127 0.3082 0.3946 REMARK 3 11 2.0700 - 2.0100 0.99 2729 131 0.4217 0.4513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 0.762 NULL REMARK 3 CHIRALITY : 0.042 568 REMARK 3 PLANARITY : 0.007 638 REMARK 3 DIHEDRAL : 14.833 1332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.1703 -23.0867 -8.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.2425 REMARK 3 T33: 0.1921 T12: -0.0168 REMARK 3 T13: -0.0254 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.8092 L22: 1.1706 REMARK 3 L33: 0.8881 L12: -0.3444 REMARK 3 L13: 0.1739 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.1009 S13: 0.0844 REMARK 3 S21: 0.1638 S22: -0.0411 S23: -0.1130 REMARK 3 S31: -0.0708 S32: 0.0904 S33: 0.0600 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9INC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 85.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487_000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PEG200 0.1 M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.37850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.37850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.04650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.04650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.37850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.04650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.49500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.37850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.04650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.49500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -58.04650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -63.49500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 35.37850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 16 REMARK 465 SER A 42 REMARK 465 HIS A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 VAL A 109 REMARK 465 ILE A 110 REMARK 465 PRO A 111 REMARK 465 HIS A 112 REMARK 465 ILE A 113 REMARK 465 ARG B 33 REMARK 465 SER B 126 REMARK 465 MET C -13 REMARK 465 GLY C -12 REMARK 465 SER C -11 REMARK 465 SER C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 SER C -3 REMARK 465 SER C -2 REMARK 465 GLY C -1 REMARK 465 LEU C 0 REMARK 465 VAL C 1 REMARK 465 PRO C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 SER C 5 REMARK 465 HIS C 6 REMARK 465 MET C 7 REMARK 465 ASP C 49 REMARK 465 GLN C 50 REMARK 465 ASP C 67 REMARK 465 GLU C 68 REMARK 465 PRO C 69 REMARK 465 SER C 70 REMARK 465 SER D 42 REMARK 465 HIS D 43 REMARK 465 GLY D 44 REMARK 465 GLY D 106 REMARK 465 GLY D 107 REMARK 465 GLY D 108 REMARK 465 VAL D 109 REMARK 465 ILE D 110 REMARK 465 PRO D 111 REMARK 465 HIS D 112 REMARK 465 ILE D 113 REMARK 465 ARG E 33 REMARK 465 SER E 126 REMARK 465 MET F -13 REMARK 465 GLY F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 HIS F -9 REMARK 465 HIS F -8 REMARK 465 HIS F -7 REMARK 465 HIS F -6 REMARK 465 HIS F -5 REMARK 465 HIS F -4 REMARK 465 SER F -3 REMARK 465 SER F -2 REMARK 465 GLY F -1 REMARK 465 LEU F 0 REMARK 465 VAL F 1 REMARK 465 PRO F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 SER F 5 REMARK 465 HIS F 6 REMARK 465 MET F 7 REMARK 465 ALA F 8 REMARK 465 ASP F 67 REMARK 465 GLU F 68 REMARK 465 PRO F 69 REMARK 465 SER F 70 REMARK 465 SER F 71 REMARK 465 ASP F 72 REMARK 465 GLY F 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 VAL A 78 CG1 CG2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LEU C 21 CG CD1 CD2 REMARK 470 GLN C 47 CG CD OE1 NE2 REMARK 470 GLU C 56 CG CD OE1 OE2 REMARK 470 ARG D 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 71 CG CD OE1 OE2 REMARK 470 LEU F 21 CG CD1 CD2 REMARK 470 GLU F 28 CG CD OE1 OE2 REMARK 470 GLN F 47 CG CD OE1 NE2 REMARK 470 ASP F 49 CG OD1 OD2 REMARK 470 GLN F 50 CG CD OE1 NE2 REMARK 470 SER F 51 OG REMARK 470 GLU F 56 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -17.94 65.20 REMARK 500 ASP C 60 32.62 -98.54 REMARK 500 ASP C 62 51.45 -95.95 REMARK 500 ARG D 39 48.12 -102.48 REMARK 500 PHE F 37 51.81 -92.39 REMARK 500 GLN F 50 106.08 -45.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH F 120 DISTANCE = 6.06 ANGSTROMS DBREF 9INC A 16 113 UNP P0C0S5 H2AZ_HUMAN 17 114 DBREF 9INC B 33 124 UNP P06899 H2B1J_HUMAN 34 125 DBREF 9INC C 8 73 UNP Q15906 VPS72_HUMAN 8 73 DBREF 9INC D 16 113 UNP P0C0S5 H2AZ_HUMAN 17 114 DBREF 9INC E 33 124 UNP P06899 H2B1J_HUMAN 34 125 DBREF 9INC F 8 73 UNP Q15906 VPS72_HUMAN 8 73 SEQADV 9INC SER B 125 UNP P06899 EXPRESSION TAG SEQADV 9INC SER B 126 UNP P06899 EXPRESSION TAG SEQADV 9INC MET C -13 UNP Q15906 INITIATING METHIONINE SEQADV 9INC GLY C -12 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER C -11 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER C -10 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -9 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -8 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -7 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -6 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -5 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C -4 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER C -3 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER C -2 UNP Q15906 EXPRESSION TAG SEQADV 9INC GLY C -1 UNP Q15906 EXPRESSION TAG SEQADV 9INC LEU C 0 UNP Q15906 EXPRESSION TAG SEQADV 9INC VAL C 1 UNP Q15906 EXPRESSION TAG SEQADV 9INC PRO C 2 UNP Q15906 EXPRESSION TAG SEQADV 9INC ARG C 3 UNP Q15906 EXPRESSION TAG SEQADV 9INC GLY C 4 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER C 5 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS C 6 UNP Q15906 EXPRESSION TAG SEQADV 9INC MET C 7 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER E 125 UNP P06899 EXPRESSION TAG SEQADV 9INC SER E 126 UNP P06899 EXPRESSION TAG SEQADV 9INC MET F -13 UNP Q15906 INITIATING METHIONINE SEQADV 9INC GLY F -12 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER F -11 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER F -10 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -9 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -8 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -7 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -6 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -5 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F -4 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER F -3 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER F -2 UNP Q15906 EXPRESSION TAG SEQADV 9INC GLY F -1 UNP Q15906 EXPRESSION TAG SEQADV 9INC LEU F 0 UNP Q15906 EXPRESSION TAG SEQADV 9INC VAL F 1 UNP Q15906 EXPRESSION TAG SEQADV 9INC PRO F 2 UNP Q15906 EXPRESSION TAG SEQADV 9INC ARG F 3 UNP Q15906 EXPRESSION TAG SEQADV 9INC GLY F 4 UNP Q15906 EXPRESSION TAG SEQADV 9INC SER F 5 UNP Q15906 EXPRESSION TAG SEQADV 9INC HIS F 6 UNP Q15906 EXPRESSION TAG SEQADV 9INC MET F 7 UNP Q15906 EXPRESSION TAG SEQRES 1 A 98 ALA VAL SER ARG SER GLN ARG ALA GLY LEU GLN PHE PRO SEQRES 2 A 98 VAL GLY ARG ILE HIS ARG HIS LEU LYS SER ARG THR THR SEQRES 3 A 98 SER HIS GLY ARG VAL GLY ALA THR ALA ALA VAL TYR SER SEQRES 4 A 98 ALA ALA ILE LEU GLU TYR LEU THR ALA GLU VAL LEU GLU SEQRES 5 A 98 LEU ALA GLY ASN ALA SER LYS ASP LEU LYS VAL LYS ARG SEQRES 6 A 98 ILE THR PRO ARG HIS LEU GLN LEU ALA ILE ARG GLY ASP SEQRES 7 A 98 GLU GLU LEU ASP SER LEU ILE LYS ALA THR ILE ALA GLY SEQRES 8 A 98 GLY GLY VAL ILE PRO HIS ILE SEQRES 1 B 94 ARG LYS GLU SER TYR SER ILE TYR VAL TYR LYS VAL LEU SEQRES 2 B 94 LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS ALA SEQRES 3 B 94 MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE PHE GLU SEQRES 4 B 94 ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR ASN SEQRES 5 B 94 LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR ALA SEQRES 6 B 94 VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA SEQRES 7 B 94 VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SER SEQRES 8 B 94 ALA SER SER SEQRES 1 C 87 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 87 LEU VAL PRO ARG GLY SER HIS MET ALA PRO ARG LYS THR SEQRES 3 C 87 ALA GLY ASN ARG LEU SER GLY LEU LEU GLU ALA GLU GLU SEQRES 4 C 87 GLU ASP GLU PHE TYR GLN THR THR TYR GLY GLY PHE THR SEQRES 5 C 87 GLU GLU SER GLY ASP ASP GLU TYR GLN GLY ASP GLN SER SEQRES 6 C 87 ASP THR GLU ASP GLU VAL ASP SER ASP PHE ASP ILE ASP SEQRES 7 C 87 GLU GLY ASP GLU PRO SER SER ASP GLY SEQRES 1 D 98 ALA VAL SER ARG SER GLN ARG ALA GLY LEU GLN PHE PRO SEQRES 2 D 98 VAL GLY ARG ILE HIS ARG HIS LEU LYS SER ARG THR THR SEQRES 3 D 98 SER HIS GLY ARG VAL GLY ALA THR ALA ALA VAL TYR SER SEQRES 4 D 98 ALA ALA ILE LEU GLU TYR LEU THR ALA GLU VAL LEU GLU SEQRES 5 D 98 LEU ALA GLY ASN ALA SER LYS ASP LEU LYS VAL LYS ARG SEQRES 6 D 98 ILE THR PRO ARG HIS LEU GLN LEU ALA ILE ARG GLY ASP SEQRES 7 D 98 GLU GLU LEU ASP SER LEU ILE LYS ALA THR ILE ALA GLY SEQRES 8 D 98 GLY GLY VAL ILE PRO HIS ILE SEQRES 1 E 94 ARG LYS GLU SER TYR SER ILE TYR VAL TYR LYS VAL LEU SEQRES 2 E 94 LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS ALA SEQRES 3 E 94 MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE PHE GLU SEQRES 4 E 94 ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR ASN SEQRES 5 E 94 LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR ALA SEQRES 6 E 94 VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA SEQRES 7 E 94 VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SER SEQRES 8 E 94 ALA SER SER SEQRES 1 F 87 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 87 LEU VAL PRO ARG GLY SER HIS MET ALA PRO ARG LYS THR SEQRES 3 F 87 ALA GLY ASN ARG LEU SER GLY LEU LEU GLU ALA GLU GLU SEQRES 4 F 87 GLU ASP GLU PHE TYR GLN THR THR TYR GLY GLY PHE THR SEQRES 5 F 87 GLU GLU SER GLY ASP ASP GLU TYR GLN GLY ASP GLN SER SEQRES 6 F 87 ASP THR GLU ASP GLU VAL ASP SER ASP PHE ASP ILE ASP SEQRES 7 F 87 GLU GLY ASP GLU PRO SER SER ASP GLY FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 SER A 18 ALA A 23 1 6 HELIX 2 AA2 PRO A 28 ARG A 39 1 12 HELIX 3 AA3 GLY A 47 SER A 73 1 27 HELIX 4 AA4 THR A 82 GLY A 92 1 11 HELIX 5 AA5 ASP A 93 ALA A 105 1 13 HELIX 6 AA6 TYR B 37 HIS B 49 1 13 HELIX 7 AA7 SER B 55 ASN B 84 1 30 HELIX 8 AA8 THR B 90 LEU B 102 1 13 HELIX 9 AA9 PRO B 103 SER B 123 1 21 HELIX 10 AB1 ARG C 16 THR C 33 1 18 HELIX 11 AB2 TYR C 34 GLY C 36 5 3 HELIX 12 AB3 SER D 18 GLY D 24 1 7 HELIX 13 AB4 PRO D 28 ARG D 39 1 12 HELIX 14 AB5 GLY D 47 SER D 73 1 27 HELIX 15 AB6 THR D 82 GLY D 92 1 11 HELIX 16 AB7 ASP D 93 ALA D 105 1 13 HELIX 17 AB8 TYR E 37 HIS E 49 1 13 HELIX 18 AB9 SER E 55 ASN E 84 1 30 HELIX 19 AC1 THR E 90 LEU E 102 1 13 HELIX 20 AC2 PRO E 103 SER E 123 1 21 HELIX 21 AC3 ARG F 16 THR F 33 1 18 HELIX 22 AC4 TYR F 34 GLY F 36 5 3 SHEET 1 AA1 2 ARG A 80 ILE A 81 0 SHEET 2 AA1 2 GLY B 53 ILE B 54 1 O GLY B 53 N ILE A 81 SHEET 1 AA2 2 ARG D 80 ILE D 81 0 SHEET 2 AA2 2 GLY E 53 ILE E 54 1 O GLY E 53 N ILE D 81 CRYST1 116.093 126.990 70.757 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014133 0.00000 MASTER 411 0 0 22 4 0 0 6 3735 6 0 46 END