HEADER RNA 18-JUL-24 9ISV TITLE ENTEROCOCCUS FAECALIS ROOL RNA MONOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (580-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS RNA, CRYOEM, NCRNA EXPDTA ELECTRON MICROSCOPY AUTHOR L.WANG,J.H.XIE,Z.M.SU REVDAT 3 14-MAY-25 9ISV 1 JRNL REVDAT 2 26-MAR-25 9ISV 1 JRNL REVDAT 1 19-MAR-25 9ISV 0 JRNL AUTH L.WANG,J.XIE,T.GONG,H.WU,Y.TU,X.PENG,S.SHANG,X.JIA,H.MA, JRNL AUTH 2 J.ZOU,S.XU,X.ZHENG,D.ZHANG,Y.LIU,C.ZHANG,Y.LUO,Z.HUANG, JRNL AUTH 3 B.SHAO,B.YING,Y.CHENG,Y.GUO,Y.LAI,D.HUANG,J.LIU,Y.WEI,S.SUN, JRNL AUTH 4 X.ZHOU,Z.SU JRNL TITL CRYO-EM REVEALS MECHANISMS OF NATURAL RNA MULTIVALENCY. JRNL REF SCIENCE V. 388 545 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 40080543 JRNL DOI 10.1126/SCIENCE.ADV3451 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.070 REMARK 3 NUMBER OF PARTICLES : 407536 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9ISV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 23-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1300049533. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENTEROCOCCUS FAECALIS ROOL RNA REMARK 245 MONOMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A A 1 REMARK 465 A A 2 REMARK 465 U A 3 REMARK 465 U A 4 REMARK 465 G A 5 REMARK 465 G A 209 REMARK 465 A A 210 REMARK 465 G A 211 REMARK 465 U A 212 REMARK 465 G A 213 REMARK 465 U A 214 REMARK 465 G A 215 REMARK 465 A A 216 REMARK 465 C A 217 REMARK 465 A A 218 REMARK 465 A A 219 REMARK 465 U A 220 REMARK 465 A A 221 REMARK 465 G A 222 REMARK 465 A A 223 REMARK 465 C A 224 REMARK 465 G A 225 REMARK 465 C A 226 REMARK 465 U A 227 REMARK 465 C A 228 REMARK 465 C A 229 REMARK 465 A A 230 REMARK 465 G A 231 REMARK 465 U A 232 REMARK 465 G A 233 REMARK 465 G A 234 REMARK 465 A A 235 REMARK 465 G A 236 REMARK 465 A A 237 REMARK 465 A A 238 REMARK 465 U A 239 REMARK 465 A A 240 REMARK 465 A A 241 REMARK 465 U A 242 REMARK 465 C A 243 REMARK 465 U A 244 REMARK 465 A A 245 REMARK 465 A A 246 REMARK 465 G A 247 REMARK 465 U A 248 REMARK 465 U A 249 REMARK 465 A A 250 REMARK 465 G A 251 REMARK 465 G A 252 REMARK 465 U A 253 REMARK 465 G A 254 REMARK 465 G A 255 REMARK 465 A A 256 REMARK 465 A A 257 REMARK 465 G A 258 REMARK 465 U A 259 REMARK 465 G A 260 REMARK 465 U A 261 REMARK 465 G A 262 REMARK 465 A A 263 REMARK 465 G A 264 REMARK 465 A A 265 REMARK 465 A A 266 REMARK 465 G A 267 REMARK 465 C A 268 REMARK 465 U A 269 REMARK 465 U A 270 REMARK 465 G A 271 REMARK 465 G A 272 REMARK 465 C A 273 REMARK 465 A A 274 REMARK 465 G A 275 REMARK 465 A A 276 REMARK 465 C A 277 REMARK 465 C A 278 REMARK 465 U A 279 REMARK 465 U A 280 REMARK 465 A A 281 REMARK 465 G A 282 REMARK 465 A A 283 REMARK 465 A A 284 REMARK 465 A A 285 REMARK 465 A A 286 REMARK 465 C A 287 REMARK 465 U A 288 REMARK 465 C A 289 REMARK 465 A A 290 REMARK 465 A A 291 REMARK 465 A A 292 REMARK 465 C A 293 REMARK 465 C A 294 REMARK 465 A A 295 REMARK 465 A A 296 REMARK 465 G A 297 REMARK 465 C A 298 REMARK 465 G A 299 REMARK 465 C A 300 REMARK 465 U A 301 REMARK 465 U A 302 REMARK 465 U A 303 REMARK 465 G A 304 REMARK 465 C A 305 REMARK 465 A A 306 REMARK 465 G A 307 REMARK 465 A A 308 REMARK 465 G A 309 REMARK 465 A A 310 REMARK 465 A A 311 REMARK 465 A A 312 REMARK 465 C A 313 REMARK 465 U A 314 REMARK 465 G A 315 REMARK 465 A A 316 REMARK 465 G A 317 REMARK 465 A A 318 REMARK 465 A A 319 REMARK 465 A A 320 REMARK 465 U A 321 REMARK 465 C A 322 REMARK 465 A A 323 REMARK 465 G A 324 REMARK 465 U A 325 REMARK 465 G A 326 REMARK 465 U A 327 REMARK 465 U A 328 REMARK 465 U A 329 REMARK 465 A A 330 REMARK 465 A A 331 REMARK 465 C A 332 REMARK 465 A A 357 REMARK 465 A A 358 REMARK 465 U A 359 REMARK 465 G A 360 REMARK 465 C A 361 REMARK 465 A A 362 REMARK 465 G A 363 REMARK 465 C A 364 REMARK 465 A A 365 REMARK 465 A A 366 REMARK 465 U A 367 REMARK 465 U A 368 REMARK 465 U A 369 REMARK 465 A A 370 REMARK 465 U A 371 REMARK 465 U A 372 REMARK 465 U A 373 REMARK 465 A A 374 REMARK 465 C A 375 REMARK 465 A A 376 REMARK 465 G A 377 REMARK 465 A A 378 REMARK 465 U A 379 REMARK 465 G A 380 REMARK 465 A A 381 REMARK 465 C A 382 REMARK 465 A A 383 REMARK 465 A A 384 REMARK 465 A A 385 REMARK 465 U A 386 REMARK 465 A A 387 REMARK 465 A A 388 REMARK 465 U A 389 REMARK 465 A A 390 REMARK 465 A A 391 REMARK 465 A A 392 REMARK 465 A A 393 REMARK 465 A A 394 REMARK 465 U A 395 REMARK 465 G A 396 REMARK 465 G A 397 REMARK 465 G A 398 REMARK 465 A A 399 REMARK 465 C A 400 REMARK 465 U A 401 REMARK 465 C A 402 REMARK 465 U A 403 REMARK 465 U A 404 REMARK 465 A A 405 REMARK 465 U A 406 REMARK 465 G A 407 REMARK 465 U A 408 REMARK 465 A A 409 REMARK 465 A A 410 REMARK 465 A A 411 REMARK 465 U A 412 REMARK 465 G A 413 REMARK 465 C A 414 REMARK 465 U A 415 REMARK 465 G A 416 REMARK 465 A A 417 REMARK 465 A A 418 REMARK 465 U A 419 REMARK 465 G A 420 REMARK 465 U A 421 REMARK 465 U A 422 REMARK 465 C A 423 REMARK 465 A A 475 REMARK 465 A A 476 REMARK 465 G A 477 REMARK 465 C A 478 REMARK 465 U A 479 REMARK 465 A A 480 REMARK 465 U A 481 REMARK 465 U A 482 REMARK 465 G A 483 REMARK 465 G A 484 REMARK 465 G A 485 REMARK 465 U A 486 REMARK 465 A A 487 REMARK 465 G A 488 REMARK 465 C A 489 REMARK 465 G A 490 REMARK 465 C A 491 REMARK 465 C A 492 REMARK 465 C A 493 REMARK 465 G A 494 REMARK 465 A A 495 REMARK 465 U A 496 REMARK 465 A A 497 REMARK 465 G A 498 REMARK 465 U A 499 REMARK 465 U A 500 REMARK 465 C A 501 REMARK 465 A A 502 REMARK 465 G A 503 REMARK 465 C A 504 REMARK 465 G A 578 REMARK 465 A A 579 REMARK 465 G A 580 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60850 RELATED DB: EMDB REMARK 900 ENTEROCOCCUS FAECALIS NCRNA DBREF1 9ISV A 1 580 GB CP060804.1 DBREF2 9ISV A 1899451202 2479786 2479207 SEQRES 1 A 580 A A U U G A A A A A U C A SEQRES 2 A 580 A U A G A U U U A A A C C SEQRES 3 A 580 U A G U G A A G A G C A U SEQRES 4 A 580 U U G A A C A A U G U G C SEQRES 5 A 580 U A G G G U A G U A U G G SEQRES 6 A 580 G A U A A G U C G A U A A SEQRES 7 A 580 C U A A A A U G A A U U G SEQRES 8 A 580 G G A U A C U G A U U G A SEQRES 9 A 580 U U U U A G U G G U G G A SEQRES 10 A 580 U U U U A C A G C A A U G SEQRES 11 A 580 U A A A A A G G A C U A A SEQRES 12 A 580 U A G U A A A A G C U A U SEQRES 13 A 580 U A A U C G C A A A G U A SEQRES 14 A 580 C U A C G U G G A A U U U SEQRES 15 A 580 G U G C A G G U G U A A G SEQRES 16 A 580 G U A C G A A A C U U U C SEQRES 17 A 580 G A G U G U G A C A A U A SEQRES 18 A 580 G A C G C U C C A G U G G SEQRES 19 A 580 A G A A U A A U C U A A G SEQRES 20 A 580 U U A G G U G G A A G U G SEQRES 21 A 580 U G A G A A G C U U G G C SEQRES 22 A 580 A G A C C U U A G A A A A SEQRES 23 A 580 C U C A A A C C A A G C G SEQRES 24 A 580 C U U U G C A G A G A A A SEQRES 25 A 580 C U G A G A A A U C A G U SEQRES 26 A 580 G U U U A A C G A A A G A SEQRES 27 A 580 A G U C G G U A C G A G U SEQRES 28 A 580 A G C U U A A U G C A G C SEQRES 29 A 580 A A U U U A U U U A C A G SEQRES 30 A 580 A U G A C A A A U A A U A SEQRES 31 A 580 A A A A U G G G A C U C U SEQRES 32 A 580 U A U G U A A A U G C U G SEQRES 33 A 580 A A U G U U C A A G U G A SEQRES 34 A 580 A A G U U A U U A G C C A SEQRES 35 A 580 G U A G A G C U A G A U C SEQRES 36 A 580 A U A C A G A A A A A G C SEQRES 37 A 580 A A A G A G A A G C U A U SEQRES 38 A 580 U G G G U A G C G C C C G SEQRES 39 A 580 A U A G U U C A G C C U C SEQRES 40 A 580 U U U G G G U A U G U G A SEQRES 41 A 580 C U G A A U A A C A C U G SEQRES 42 A 580 U A A A C A A A G G A A G SEQRES 43 A 580 C A G G A A G A A A A G C SEQRES 44 A 580 C U A A A U C U G U U G A SEQRES 45 A 580 U U U U U G A G CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 7538 U A 577 MASTER 333 0 0 0 0 0 0 6 7537 1 0 45 END