data_9IWF # _entry.id 9IWF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9IWF pdb_00009iwf 10.2210/pdb9iwf/pdb WWPDB D_1300049806 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-06-04 ? 2 'Structure model' 1 1 2025-07-02 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9IWF _pdbx_database_status.recvd_initial_deposition_date 2024-07-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 1 _pdbx_contact_author.email aimingren@zju.edu.cn _pdbx_contact_author.name_first Aiming _pdbx_contact_author.name_last Ren _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5420-4899 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xu, X.C.' 1 ? 'Ren, A.M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CN _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci China Life Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1869-1889 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 68 _citation.language ? _citation.page_first 2073 _citation.page_last 2084 _citation.title 'Structure-based principles underlying ligand recognition of xanthine-II riboswitch.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s11427-024-2800-0 _citation.pdbx_database_id_PubMed 40304919 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, X.' 1 ? primary 'He, M.' 2 ? primary 'Tai, X.' 3 ? primary 'Ren, Q.' 4 ? primary 'Shen, X.' 5 ? primary 'Li, C.' 6 ? primary 'Ren, A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'P. beijingensis xanthine-II riboswitch (70-MER)' 22063.092 2 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 15 ? ? ? ? 4 non-polymer syn XANTHINE 152.111 2 ? ? ? ? 5 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUGUAUAAGCUCAUUAAUACGGUUUGAGCGUUUCGACCAGGCAACCCUAAAUUGCCCCAGGCUACAUC _entity_poly.pdbx_seq_one_letter_code_can GGUGUAUAAGCUCAUUAAUACGGUUUGAGCGUUUCGACCAGGCAACCCUAAAUUGCCCCAGGCUACAUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 'MAGNESIUM ION' MG 4 XANTHINE XAN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 U n 1 6 A n 1 7 U n 1 8 A n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 U n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 A n 1 21 C n 1 22 G n 1 23 G n 1 24 U n 1 25 U n 1 26 U n 1 27 G n 1 28 A n 1 29 G n 1 30 C n 1 31 G n 1 32 U n 1 33 U n 1 34 U n 1 35 C n 1 36 G n 1 37 A n 1 38 C n 1 39 C n 1 40 A n 1 41 G n 1 42 G n 1 43 C n 1 44 A n 1 45 A n 1 46 C n 1 47 C n 1 48 C n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 U n 1 55 G n 1 56 C n 1 57 C n 1 58 C n 1 59 C n 1 60 A n 1 61 G n 1 62 G n 1 63 C n 1 64 U n 1 65 A n 1 66 C n 1 67 A n 1 68 U n 1 69 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 69 _pdbx_entity_src_syn.organism_scientific 'Paenibacillus beijingensis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1126833 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 XAN non-polymer . XANTHINE ? 'C5 H4 N4 O2' 152.111 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 G 2 3 3 G G A . n A 1 3 U 3 4 4 U U A . n A 1 4 G 4 5 5 G G A . n A 1 5 U 5 6 6 U U A . n A 1 6 A 6 7 7 A A A . n A 1 7 U 7 8 8 U U A . n A 1 8 A 8 9 9 A A A . n A 1 9 A 9 10 10 A A A . n A 1 10 G 10 11 11 G G A . n A 1 11 C 11 12 12 C C A . n A 1 12 U 12 13 13 U U A . n A 1 13 C 13 14 14 C C A . n A 1 14 A 14 15 15 A A A . n A 1 15 U 15 16 16 U U A . n A 1 16 U 16 17 17 U U A . n A 1 17 A 17 18 18 A A A . n A 1 18 A 18 19 19 A A A . n A 1 19 U 19 20 20 U U A . n A 1 20 A 20 21 21 A A A . n A 1 21 C 21 22 22 C C A . n A 1 22 G 22 23 23 G G A . n A 1 23 G 23 24 24 G G A . n A 1 24 U 24 25 25 U U A . n A 1 25 U 25 26 26 U U A . n A 1 26 U 26 27 27 U U A . n A 1 27 G 27 28 28 G G A . n A 1 28 A 28 29 29 A A A . n A 1 29 G 29 30 30 G G A . n A 1 30 C 30 31 31 C C A . n A 1 31 G 31 32 32 G G A . n A 1 32 U 32 33 33 U U A . n A 1 33 U 33 34 34 U U A . n A 1 34 U 34 35 35 U U A . n A 1 35 C 35 36 36 C C A . n A 1 36 G 36 37 37 G G A . n A 1 37 A 37 38 38 A A A . n A 1 38 C 38 39 39 C C A . n A 1 39 C 39 40 40 C C A . n A 1 40 A 40 41 41 A A A . n A 1 41 G 41 42 42 G G A . n A 1 42 G 42 43 43 G G A . n A 1 43 C 43 44 44 C C A . n A 1 44 A 44 45 45 A A A . n A 1 45 A 45 46 46 A A A . n A 1 46 C 46 47 47 C C A . n A 1 47 C 47 48 48 C C A . n A 1 48 C 48 49 49 C C A . n A 1 49 U 49 50 50 U U A . n A 1 50 A 50 51 51 A A A . n A 1 51 A 51 52 52 A A A . n A 1 52 A 52 53 53 A A A . n A 1 53 U 53 54 54 U U A . n A 1 54 U 54 55 55 U U A . n A 1 55 G 55 56 56 G G A . n A 1 56 C 56 57 57 C C A . n A 1 57 C 57 58 58 C C A . n A 1 58 C 58 59 59 C C A . n A 1 59 C 59 60 60 C C A . n A 1 60 A 60 61 61 A A A . n A 1 61 G 61 62 62 G G A . n A 1 62 G 62 63 63 G G A . n A 1 63 C 63 64 64 C C A . n A 1 64 U 64 65 65 U U A . n A 1 65 A 65 66 66 A A A . n A 1 66 C 66 67 67 C C A . n A 1 67 A 67 68 68 A A A . n A 1 68 U 68 69 69 U U A . n A 1 69 C 69 70 70 C C A . n B 1 1 G 1 2 2 G G B . n B 1 2 G 2 3 3 G G B . n B 1 3 U 3 4 4 U U B . n B 1 4 G 4 5 5 G G B . n B 1 5 U 5 6 6 U U B . n B 1 6 A 6 7 7 A A B . n B 1 7 U 7 8 8 U U B . n B 1 8 A 8 9 9 A A B . n B 1 9 A 9 10 10 A A B . n B 1 10 G 10 11 11 G G B . n B 1 11 C 11 12 12 C C B . n B 1 12 U 12 13 13 U U B . n B 1 13 C 13 14 14 C C B . n B 1 14 A 14 15 15 A A B . n B 1 15 U 15 16 16 U U B . n B 1 16 U 16 17 17 U U B . n B 1 17 A 17 18 18 A A B . n B 1 18 A 18 19 19 A A B . n B 1 19 U 19 20 20 U U B . n B 1 20 A 20 21 21 A A B . n B 1 21 C 21 22 22 C C B . n B 1 22 G 22 23 23 G G B . n B 1 23 G 23 24 24 G G B . n B 1 24 U 24 25 25 U U B . n B 1 25 U 25 26 26 U U B . n B 1 26 U 26 27 27 U U B . n B 1 27 G 27 28 28 G G B . n B 1 28 A 28 29 29 A A B . n B 1 29 G 29 30 30 G G B . n B 1 30 C 30 31 31 C C B . n B 1 31 G 31 32 32 G G B . n B 1 32 U 32 33 33 U U B . n B 1 33 U 33 34 34 U U B . n B 1 34 U 34 35 35 U U B . n B 1 35 C 35 36 36 C C B . n B 1 36 G 36 37 37 G G B . n B 1 37 A 37 38 38 A A B . n B 1 38 C 38 39 39 C C B . n B 1 39 C 39 40 40 C C B . n B 1 40 A 40 41 41 A A B . n B 1 41 G 41 42 42 G G B . n B 1 42 G 42 43 43 G G B . n B 1 43 C 43 44 44 C C B . n B 1 44 A 44 45 45 A A B . n B 1 45 A 45 46 46 A A B . n B 1 46 C 46 47 47 C C B . n B 1 47 C 47 48 48 C C B . n B 1 48 C 48 49 49 C C B . n B 1 49 U 49 50 50 U U B . n B 1 50 A 50 51 51 A A B . n B 1 51 A 51 52 52 A A B . n B 1 52 A 52 53 53 A A B . n B 1 53 U 53 54 54 U U B . n B 1 54 U 54 55 55 U U B . n B 1 55 G 55 56 56 G G B . n B 1 56 C 56 57 57 C C B . n B 1 57 C 57 58 58 C C B . n B 1 58 C 58 59 59 C C B . n B 1 59 C 59 60 60 C C B . n B 1 60 A 60 61 61 A A B . n B 1 61 G 61 62 62 G G B . n B 1 62 G 62 63 63 G G B . n B 1 63 C 63 64 64 C C B . n B 1 64 U 64 65 65 U U B . n B 1 65 A 65 66 66 A A B . n B 1 66 C 66 67 67 C C B . n B 1 67 A 67 68 68 A A B . n B 1 68 U 68 69 69 U U B . n B 1 69 C 69 70 70 C C B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id XAN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id XAN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP 1 101 1 GTP GTP A . D 3 MG 1 102 2 MG MG A . E 3 MG 1 103 8 MG MG A . F 3 MG 1 104 9 MG MG A . G 3 MG 1 105 10 MG MG A . H 3 MG 1 106 12 MG MG A . I 3 MG 1 107 13 MG MG A . J 3 MG 1 108 15 MG MG A . K 3 MG 1 109 16 MG MG A . L 4 XAN 1 110 2 XAN XAN A . M 2 GTP 1 101 1 GTP GTP B . N 3 MG 1 102 1 MG MG B . O 3 MG 1 103 4 MG MG B . P 3 MG 1 104 5 MG MG B . Q 3 MG 1 105 6 MG MG B . R 3 MG 1 106 7 MG MG B . S 3 MG 1 107 14 MG MG B . T 3 MG 1 108 17 MG MG B . U 4 XAN 1 109 1 XAN XAN B . V 5 HOH 1 201 84 HOH HOH A . V 5 HOH 2 202 9 HOH HOH A . V 5 HOH 3 203 104 HOH HOH A . V 5 HOH 4 204 82 HOH HOH A . V 5 HOH 5 205 98 HOH HOH A . V 5 HOH 6 206 59 HOH HOH A . V 5 HOH 7 207 83 HOH HOH A . V 5 HOH 8 208 67 HOH HOH A . V 5 HOH 9 209 69 HOH HOH A . V 5 HOH 10 210 74 HOH HOH A . V 5 HOH 11 211 73 HOH HOH A . V 5 HOH 12 212 94 HOH HOH A . V 5 HOH 13 213 102 HOH HOH A . V 5 HOH 14 214 61 HOH HOH A . V 5 HOH 15 215 101 HOH HOH A . V 5 HOH 16 216 96 HOH HOH A . V 5 HOH 17 217 77 HOH HOH A . V 5 HOH 18 218 60 HOH HOH A . V 5 HOH 19 219 68 HOH HOH A . V 5 HOH 20 220 63 HOH HOH A . V 5 HOH 21 221 10 HOH HOH A . V 5 HOH 22 222 71 HOH HOH A . V 5 HOH 23 223 72 HOH HOH A . V 5 HOH 24 224 62 HOH HOH A . V 5 HOH 25 225 58 HOH HOH A . V 5 HOH 26 226 66 HOH HOH A . V 5 HOH 27 227 8 HOH HOH A . V 5 HOH 28 228 110 HOH HOH A . V 5 HOH 29 229 64 HOH HOH A . V 5 HOH 30 230 57 HOH HOH A . V 5 HOH 31 231 80 HOH HOH A . V 5 HOH 32 232 5 HOH HOH A . V 5 HOH 33 233 95 HOH HOH A . V 5 HOH 34 234 70 HOH HOH A . V 5 HOH 35 235 51 HOH HOH A . V 5 HOH 36 236 100 HOH HOH A . V 5 HOH 37 237 81 HOH HOH A . V 5 HOH 38 238 97 HOH HOH A . V 5 HOH 39 239 79 HOH HOH A . V 5 HOH 40 240 78 HOH HOH A . V 5 HOH 41 241 76 HOH HOH A . V 5 HOH 42 242 111 HOH HOH A . V 5 HOH 43 243 99 HOH HOH A . W 5 HOH 1 201 21 HOH HOH B . W 5 HOH 2 202 54 HOH HOH B . W 5 HOH 3 203 19 HOH HOH B . W 5 HOH 4 204 1 HOH HOH B . W 5 HOH 5 205 33 HOH HOH B . W 5 HOH 6 206 50 HOH HOH B . W 5 HOH 7 207 11 HOH HOH B . W 5 HOH 8 208 4 HOH HOH B . W 5 HOH 9 209 3 HOH HOH B . W 5 HOH 10 210 103 HOH HOH B . W 5 HOH 11 211 46 HOH HOH B . W 5 HOH 12 212 56 HOH HOH B . W 5 HOH 13 213 48 HOH HOH B . W 5 HOH 14 214 65 HOH HOH B . W 5 HOH 15 215 17 HOH HOH B . W 5 HOH 16 216 45 HOH HOH B . W 5 HOH 17 217 92 HOH HOH B . W 5 HOH 18 218 26 HOH HOH B . W 5 HOH 19 219 106 HOH HOH B . W 5 HOH 20 220 22 HOH HOH B . W 5 HOH 21 221 31 HOH HOH B . W 5 HOH 22 222 86 HOH HOH B . W 5 HOH 23 223 44 HOH HOH B . W 5 HOH 24 224 37 HOH HOH B . W 5 HOH 25 225 25 HOH HOH B . W 5 HOH 26 226 42 HOH HOH B . W 5 HOH 27 227 41 HOH HOH B . W 5 HOH 28 228 15 HOH HOH B . W 5 HOH 29 229 87 HOH HOH B . W 5 HOH 30 230 113 HOH HOH B . W 5 HOH 31 231 112 HOH HOH B . W 5 HOH 32 232 90 HOH HOH B . W 5 HOH 33 233 18 HOH HOH B . W 5 HOH 34 234 107 HOH HOH B . W 5 HOH 35 235 14 HOH HOH B . W 5 HOH 36 236 47 HOH HOH B . W 5 HOH 37 237 43 HOH HOH B . W 5 HOH 38 238 13 HOH HOH B . W 5 HOH 39 239 6 HOH HOH B . W 5 HOH 40 240 93 HOH HOH B . W 5 HOH 41 241 36 HOH HOH B . W 5 HOH 42 242 12 HOH HOH B . W 5 HOH 43 243 89 HOH HOH B . W 5 HOH 44 244 52 HOH HOH B . W 5 HOH 45 245 27 HOH HOH B . W 5 HOH 46 246 85 HOH HOH B . W 5 HOH 47 247 16 HOH HOH B . W 5 HOH 48 248 20 HOH HOH B . W 5 HOH 49 249 49 HOH HOH B . W 5 HOH 50 250 108 HOH HOH B . W 5 HOH 51 251 39 HOH HOH B . W 5 HOH 52 252 30 HOH HOH B . W 5 HOH 53 253 88 HOH HOH B . W 5 HOH 54 254 105 HOH HOH B . W 5 HOH 55 255 28 HOH HOH B . W 5 HOH 56 256 91 HOH HOH B . W 5 HOH 57 257 35 HOH HOH B . W 5 HOH 58 258 2 HOH HOH B . W 5 HOH 59 259 109 HOH HOH B . W 5 HOH 60 260 55 HOH HOH B . W 5 HOH 61 261 38 HOH HOH B . W 5 HOH 62 262 23 HOH HOH B . W 5 HOH 63 263 34 HOH HOH B . W 5 HOH 64 264 53 HOH HOH B . W 5 HOH 65 265 7 HOH HOH B . W 5 HOH 66 266 32 HOH HOH B . W 5 HOH 67 267 40 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.18.2_3874: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9IWF _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.585 _cell.length_a_esd ? _cell.length_b 115.752 _cell.length_b_esd ? _cell.length_c 126.759 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9IWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9IWF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.02 M Magnesium chloride, 0.04 M Sodium cacodylate pH 5.5, 40% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.002 M Hexammine cobalt(III) chloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-07-03 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.978 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9IWF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.06 _reflns.d_resolution_low 85.48 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24728 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.92 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.071 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 307642 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.17 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all 46330 _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3588 _reflns_shell.percent_possible_obs 100.0 _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.9 _reflns_shell.pdbx_chi_squared 0.83 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs 2.4 _reflns_shell.pdbx_Rrim_I_all 1.247 _reflns_shell.pdbx_Rpim_I_all 0.344 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.793 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.198 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9IWF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.06 _refine.ls_d_res_low 30.56 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24648 _refine.ls_number_reflns_R_free 1999 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.14 _refine.ls_percent_reflns_R_free 8.11 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2215 _refine.ls_R_factor_R_free 0.2540 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2187 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.61 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.35 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.06 _refine_hist.d_res_low 30.56 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 3133 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2986 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 3354 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.131 ? 5216 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.358 ? 1698 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.051 ? 698 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 144 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.06 2.11 . . 139 1576 100.00 . . . . 0.3320 . . . . . . . . . . . 0.3764 'X-RAY DIFFRACTION' 2.11 2.16 . . 145 1642 100.00 . . . . 0.3060 . . . . . . . . . . . 0.3561 'X-RAY DIFFRACTION' 2.16 2.23 . . 146 1656 100.00 . . . . 0.2979 . . . . . . . . . . . 0.3877 'X-RAY DIFFRACTION' 2.23 2.30 . . 110 1248 78.00 . . . . 0.2880 . . . . . . . . . . . 0.3431 'X-RAY DIFFRACTION' 2.30 2.38 . . 146 1657 100.00 . . . . 0.2917 . . . . . . . . . . . 0.3416 'X-RAY DIFFRACTION' 2.38 2.48 . . 144 1633 100.00 . . . . 0.2940 . . . . . . . . . . . 0.3023 'X-RAY DIFFRACTION' 2.48 2.59 . . 148 1661 100.00 . . . . 0.3065 . . . . . . . . . . . 0.3100 'X-RAY DIFFRACTION' 2.59 2.73 . . 143 1629 100.00 . . . . 0.3136 . . . . . . . . . . . 0.4151 'X-RAY DIFFRACTION' 2.73 2.90 . . 147 1680 100.00 . . . . 0.3063 . . . . . . . . . . . 0.3829 'X-RAY DIFFRACTION' 2.90 3.12 . . 146 1641 100.00 . . . . 0.2616 . . . . . . . . . . . 0.3005 'X-RAY DIFFRACTION' 3.12 3.43 . . 148 1677 100.00 . . . . 0.2101 . . . . . . . . . . . 0.2370 'X-RAY DIFFRACTION' 3.43 3.93 . . 124 1413 83.00 . . . . 0.1883 . . . . . . . . . . . 0.2478 'X-RAY DIFFRACTION' 3.93 4.95 . . 152 1710 100.00 . . . . 0.1630 . . . . . . . . . . . 0.1871 'X-RAY DIFFRACTION' 4.95 30.56 . . 161 1826 99.00 . . . . 0.1690 . . . . . . . . . . . 0.1799 # _struct.entry_id 9IWF _struct.title 'crystal structure of P. beijingensis xanthine-II riboswitch in complex with xanthine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9IWF _struct_keywords.text 'riboswitch, RNA, xanthine' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 2 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 4 ? V N N 5 ? W N N 5 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP011058.1 _struct_ref.pdbx_db_accession 779742186 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CUUGUAUAAGCUCAUUAAUACGGUUUGAGCGUUUCGACCAGGCAACCCUAAAUUGCCCCAGGCUACAAG _struct_ref.pdbx_align_begin 159830 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9IWF A 1 ? 69 ? 779742186 159830 ? 159898 ? 2 70 2 1 9IWF B 1 ? 69 ? 779742186 159830 ? 159898 ? 2 70 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9IWF G A 1 ? GB 779742186 C 159830 'engineered mutation' 2 1 1 9IWF G A 2 ? GB 779742186 U 159831 'engineered mutation' 3 2 1 9IWF U A 68 ? GB 779742186 A 159897 'engineered mutation' 69 3 1 9IWF C A 69 ? GB 779742186 G 159898 'engineered mutation' 70 4 2 9IWF G B 1 ? GB 779742186 C 159830 'engineered mutation' 2 5 2 9IWF G B 2 ? GB 779742186 U 159831 'engineered mutation' 3 6 2 9IWF U B 68 ? GB 779742186 A 159897 'engineered mutation' 69 7 2 9IWF C B 69 ? GB 779742186 G 159898 'engineered mutation' 70 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,V 2 1 B,M,N,O,P,Q,R,S,T,U,W # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 1 P ? ? ? 1_555 C GTP . "O3'" ? ? A G 2 A GTP 101 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale2 covale both ? B G 1 P ? ? ? 1_555 M GTP . "O3'" ? ? B G 2 B GTP 101 1_555 ? ? ? ? ? ? ? 1.561 ? ? metalc1 metalc ? ? A G 2 OP1 ? ? ? 1_555 E MG . MG ? ? A G 3 A MG 103 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc2 metalc ? ? A A 8 OP2 ? ? ? 1_555 F MG . MG ? ? A A 9 A MG 104 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc3 metalc ? ? A A 8 OP2 ? ? ? 1_555 J MG . MG ? ? A A 9 A MG 108 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc4 metalc ? ? A G 62 O6 ? ? ? 1_555 J MG . MG ? ? A G 63 A MG 108 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc5 metalc ? ? A C 69 "O3'" ? ? ? 1_555 I MG . MG ? ? A C 70 A MG 107 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc6 metalc ? ? A C 69 "O2'" ? ? ? 1_555 I MG . MG ? ? A C 70 A MG 107 1_555 ? ? ? ? ? ? ? 1.880 ? ? metalc7 metalc ? ? J MG . MG ? ? ? 1_555 L XAN . O6 ? ? A MG 108 A XAN 110 1_555 ? ? ? ? ? ? ? 2.986 ? ? metalc8 metalc ? ? B A 8 OP2 ? ? ? 1_555 O MG . MG ? ? B A 9 B MG 103 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc9 metalc ? ? B G 42 O6 ? ? ? 1_555 S MG . MG ? ? B G 43 B MG 107 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc10 metalc ? ? B C 69 "O3'" ? ? ? 1_555 R MG . MG ? ? B C 70 B MG 106 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc11 metalc ? ? B C 69 "O2'" ? ? ? 1_555 R MG . MG ? ? B C 70 B MG 106 1_555 ? ? ? ? ? ? ? 2.064 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 2 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 2 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 2 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 68 O2 ? ? A G 3 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 68 N3 ? ? A G 3 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 4 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 4 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 65 N1 ? ? A U 6 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 65 N6 ? ? A U 6 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 64 O4 ? ? A A 7 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 8 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 8 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 8 N1 ? ? ? 1_555 A G 31 N2 ? ? A A 9 A G 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog18 hydrog ? ? A A 8 N6 ? ? ? 1_555 A G 31 N3 ? ? A A 9 A G 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog19 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 60 N1 ? ? A A 10 A A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog20 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 60 N6 ? ? A A 10 A A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 12 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 12 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 12 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 13 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 13 A A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 14 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 15 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 15 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 15 N3 ? ? ? 1_555 A U 25 O4 ? ? A U 16 A U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog35 hydrog ? ? A U 15 O2 ? ? ? 1_555 A U 25 N3 ? ? A U 16 A U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog36 hydrog ? ? A U 16 N3 ? ? ? 1_555 A U 24 O4 ? ? A U 17 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog37 hydrog ? ? A U 16 O2 ? ? ? 1_555 A U 24 N3 ? ? A U 17 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 19 A A 53 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 19 A A 53 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog40 hydrog ? ? A U 19 O2 ? ? ? 1_555 A G 22 N2 ? ? A U 20 A G 23 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 20 A A 52 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog42 hydrog ? ? A A 20 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 21 A A 51 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A A 20 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 21 A A 51 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 23 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 24 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 24 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 24 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 24 A A 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 24 A A 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog52 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 32 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 32 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 32 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 32 N3 ? ? ? 1_555 A G 36 O6 ? ? A U 33 A G 37 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog56 hydrog ? ? A U 32 O4 ? ? ? 1_555 A G 36 N1 ? ? A U 33 A G 37 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog57 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 65 N3 ? ? A U 35 A A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog58 hydrog ? ? A C 35 N4 ? ? ? 1_555 A U 64 O2 ? ? A C 36 A U 65 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog59 hydrog ? ? A C 39 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 39 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 39 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 40 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 40 N1 ? ? ? 1_555 A C 58 N4 ? ? A A 41 A C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog63 hydrog ? ? A A 40 N6 ? ? ? 1_555 A C 58 N3 ? ? A A 41 A C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog64 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 42 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 43 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 43 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 43 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 43 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 44 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 45 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 45 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 46 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 46 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 48 A A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog78 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 2 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 2 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 2 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 2 N1 ? ? ? 1_555 B U 68 O2 ? ? B G 3 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? B G 2 O6 ? ? ? 1_555 B U 68 N3 ? ? B G 3 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 67 N1 ? ? B U 4 B A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 67 N6 ? ? B U 4 B A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 66 N3 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 66 O2 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 66 N4 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 65 N1 ? ? B U 6 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 65 N6 ? ? B U 6 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 64 N3 ? ? B A 7 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 64 O4 ? ? B A 7 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 37 N1 ? ? B U 8 B A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 37 N6 ? ? B U 8 B A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 8 N1 ? ? ? 1_555 B G 31 N2 ? ? B A 9 B G 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog95 hydrog ? ? B A 8 N6 ? ? ? 1_555 B G 31 N3 ? ? B A 9 B G 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog96 hydrog ? ? B A 9 N6 ? ? ? 1_555 B A 60 N1 ? ? B A 10 B A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog97 hydrog ? ? B A 9 N7 ? ? ? 1_555 B A 60 N6 ? ? B A 10 B A 61 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog98 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 12 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 12 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 12 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 28 N1 ? ? B U 13 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 28 N6 ? ? B U 13 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 14 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 14 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 14 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B A 14 N1 ? ? ? 1_555 B U 26 N3 ? ? B A 15 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B A 14 N6 ? ? ? 1_555 B U 26 O4 ? ? B A 15 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 15 N3 ? ? ? 1_555 B U 25 O4 ? ? B U 16 B U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog112 hydrog ? ? B U 15 O2 ? ? ? 1_555 B U 25 N3 ? ? B U 16 B U 26 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog113 hydrog ? ? B U 16 N3 ? ? ? 1_555 B U 24 O2 ? ? B U 17 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog114 hydrog ? ? B U 16 O4 ? ? ? 1_555 B U 24 N3 ? ? B U 17 B U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog115 hydrog ? ? B A 18 N1 ? ? ? 1_555 B A 52 N6 ? ? B A 19 B A 53 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog116 hydrog ? ? B A 18 N6 ? ? ? 1_555 B A 52 N7 ? ? B A 19 B A 53 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog117 hydrog ? ? B U 19 O2 ? ? ? 1_555 B G 22 N2 ? ? B U 20 B G 23 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog118 hydrog ? ? B U 19 N3 ? ? ? 1_555 B A 51 N7 ? ? B U 20 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog119 hydrog ? ? B U 19 O2 ? ? ? 1_555 B A 51 N6 ? ? B U 20 B A 52 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog120 hydrog ? ? B A 20 N6 ? ? ? 1_555 B A 50 N1 ? ? B A 21 B A 51 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog121 hydrog ? ? B A 20 N7 ? ? ? 1_555 B A 50 N6 ? ? B A 21 B A 51 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog122 hydrog ? ? B G 22 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 23 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B G 22 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 23 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 22 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 23 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 46 N3 ? ? B G 24 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 46 O2 ? ? B G 24 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 24 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 23 N2 ? ? ? 1_555 B A 52 N1 ? ? B G 24 B A 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog129 hydrog ? ? B G 23 N3 ? ? ? 1_555 B A 52 N6 ? ? B G 24 B A 53 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog130 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 32 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 32 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 32 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B U 32 N3 ? ? ? 1_555 B G 36 O6 ? ? B U 33 B G 37 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog134 hydrog ? ? B U 32 O4 ? ? ? 1_555 B G 36 N1 ? ? B U 33 B G 37 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog135 hydrog ? ? B U 34 N3 ? ? ? 1_555 B A 65 N3 ? ? B U 35 B A 66 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog136 hydrog ? ? B C 35 N4 ? ? ? 1_555 B U 64 O2 ? ? B C 36 B U 65 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog137 hydrog ? ? B C 39 N3 ? ? ? 1_555 B G 61 N1 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 39 N4 ? ? ? 1_555 B G 61 O6 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B C 39 O2 ? ? ? 1_555 B G 61 N2 ? ? B C 40 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B A 40 N1 ? ? ? 1_555 B C 58 N4 ? ? B A 41 B C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog141 hydrog ? ? B A 40 N6 ? ? ? 1_555 B C 58 N3 ? ? B A 41 B C 59 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog142 hydrog ? ? B G 41 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B G 41 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B G 41 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 42 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B G 42 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B G 42 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B G 42 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 43 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B C 43 N3 ? ? ? 1_555 B G 55 N1 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B C 43 N4 ? ? ? 1_555 B G 55 O6 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B C 43 O2 ? ? ? 1_555 B G 55 N2 ? ? B C 44 B G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B A 44 N1 ? ? ? 1_555 B U 54 N3 ? ? B A 45 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B A 44 N6 ? ? ? 1_555 B U 54 O4 ? ? B A 45 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B A 45 N1 ? ? ? 1_555 B U 53 N3 ? ? B A 46 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B A 45 N6 ? ? ? 1_555 B U 53 O4 ? ? B A 46 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? B C 47 O2 ? ? ? 1_555 B A 51 N6 ? ? B C 48 B A 52 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 8 ? A A 9 ? 1_555 MG ? J MG . ? A MG 108 ? 1_555 O6 ? A G 62 ? A G 63 ? 1_555 114.7 ? 2 OP2 ? A A 8 ? A A 9 ? 1_555 MG ? J MG . ? A MG 108 ? 1_555 O6 ? L XAN . ? A XAN 110 ? 1_555 150.0 ? 3 O6 ? A G 62 ? A G 63 ? 1_555 MG ? J MG . ? A MG 108 ? 1_555 O6 ? L XAN . ? A XAN 110 ? 1_555 83.1 ? 4 "O3'" ? A C 69 ? A C 70 ? 1_555 MG ? I MG . ? A MG 107 ? 1_555 "O2'" ? A C 69 ? A C 70 ? 1_555 86.3 ? 5 "O3'" ? B C 69 ? B C 70 ? 1_555 MG ? R MG . ? B MG 106 ? 1_555 "O2'" ? B C 69 ? B C 70 ? 1_555 69.9 ? # _pdbx_entry_details.entry_id 9IWF _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A G 62 ? ? O A HOH 201 ? ? 2.07 2 1 O A HOH 236 ? ? O A HOH 239 ? ? 2.10 3 1 O A HOH 232 ? ? O B HOH 204 ? ? 2.18 4 1 O B HOH 241 ? ? O B HOH 263 ? ? 2.18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 XAN N9 N Y N 197 XAN C4 C Y N 198 XAN N3 N Y N 199 XAN C2 C Y N 200 XAN O2 O N N 201 XAN N1 N Y N 202 XAN C6 C Y N 203 XAN O6 O N N 204 XAN C5 C Y N 205 XAN N7 N Y N 206 XAN C8 C Y N 207 XAN HN9 H N N 208 XAN HN3 H N N 209 XAN HN1 H N N 210 XAN H8 H N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 XAN N9 C4 sing Y N 203 XAN N9 C8 sing Y N 204 XAN N9 HN9 sing N N 205 XAN C4 N3 sing Y N 206 XAN C4 C5 doub Y N 207 XAN N3 C2 sing Y N 208 XAN N3 HN3 sing N N 209 XAN C2 O2 doub N N 210 XAN C2 N1 sing Y N 211 XAN N1 C6 sing Y N 212 XAN N1 HN1 sing N N 213 XAN C6 O6 doub N N 214 XAN C6 C5 sing Y N 215 XAN C5 N7 sing Y N 216 XAN N7 C8 doub Y N 217 XAN C8 H8 sing N N 218 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9IWF 'double helix' 9IWF 'a-form double helix' 9IWF 'mismatched base pair' 9IWF 'internal loop' 9IWF 'triple helix' 9IWF 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 69 1_555 -0.254 -0.072 0.100 -7.804 -9.162 -2.449 1 A_G2:C70_A A 2 ? A 70 ? 19 1 1 A G 2 1_555 A U 68 1_555 -2.335 -0.563 0.228 -1.309 -13.052 -1.311 2 A_G3:U69_A A 3 ? A 69 ? 28 1 1 A U 3 1_555 A A 67 1_555 -0.266 -0.166 0.032 3.654 -17.937 0.821 3 A_U4:A68_A A 4 ? A 68 ? 20 1 1 A G 4 1_555 A C 66 1_555 -0.265 -0.152 0.014 -4.687 -16.208 2.943 4 A_G5:C67_A A 5 ? A 67 ? 19 1 1 A U 5 1_555 A A 65 1_555 0.022 -0.144 0.065 -6.780 -17.287 7.157 5 A_U6:A66_A A 6 ? A 66 ? 20 1 1 A A 6 1_555 A U 64 1_555 0.084 -0.121 0.100 0.840 -8.097 2.515 6 A_A7:U65_A A 7 ? A 65 ? 20 1 1 A U 24 1_555 A U 16 1_555 -0.810 -1.463 -0.078 -4.913 -7.779 22.621 7 A_U25:U17_A A 25 ? A 17 ? 16 1 1 A U 25 1_555 A U 15 1_555 -2.646 -1.676 0.022 0.039 -15.874 13.130 8 A_U26:U16_A A 26 ? A 16 ? 16 1 1 A U 26 1_555 A A 14 1_555 -0.401 -0.104 0.417 -9.108 -6.876 13.083 9 A_U27:A15_A A 27 ? A 15 ? 20 1 1 A G 27 1_555 A C 13 1_555 -0.408 0.323 0.178 -5.581 0.953 12.545 10 A_G28:C14_A A 28 ? A 14 ? 19 1 1 A A 28 1_555 A U 12 1_555 0.039 -0.264 0.375 1.570 -5.692 2.655 11 A_A29:U13_A A 29 ? A 13 ? 20 1 1 A G 29 1_555 A C 11 1_555 -0.151 -0.204 -0.387 -12.042 -15.275 2.093 12 A_G30:C12_A A 30 ? A 12 ? 19 1 1 A C 30 1_555 A G 10 1_555 0.584 -0.126 0.224 -9.977 -10.186 6.843 13 A_C31:G11_A A 31 ? A 11 ? 19 1 1 A G 31 1_555 A C 38 1_555 -0.292 -0.385 0.131 -3.041 -3.862 -3.415 14 A_G32:C39_A A 32 ? A 39 ? 19 1 1 A U 7 1_555 A A 37 1_555 -0.202 -0.074 -0.516 21.740 -8.249 4.354 15 A_U8:A38_A A 8 ? A 38 ? 20 1 1 A U 32 1_555 A G 36 1_555 -0.251 0.983 -0.263 45.957 7.511 -158.784 16 A_U33:G37_A A 33 ? A 37 ? 27 2 1 A A 20 1_555 A A 50 1_555 -4.931 0.438 0.482 6.123 -1.767 -107.827 17 A_A21:A51_A A 21 ? A 51 ? 5 4 1 A C 47 1_555 A G 22 1_555 0.051 0.163 0.975 -11.200 -11.223 3.201 18 A_C48:G23_A A 48 ? A 23 ? 19 1 1 A C 46 1_555 A G 23 1_555 -0.769 -0.291 0.957 -26.673 -14.428 -7.643 19 A_C47:G24_A A 47 ? A 24 ? 19 1 1 A A 45 1_555 A U 53 1_555 -0.167 -0.238 -0.393 -9.004 -9.899 1.771 20 A_A46:U54_A A 46 ? A 54 ? 20 1 1 A A 44 1_555 A U 54 1_555 -0.398 -0.211 -0.008 8.328 -6.589 6.117 21 A_A45:U55_A A 45 ? A 55 ? 20 1 1 A C 43 1_555 A G 55 1_555 0.157 -0.243 -0.329 14.228 -10.054 -1.427 22 A_C44:G56_A A 44 ? A 56 ? 19 1 1 A G 42 1_555 A C 56 1_555 -0.251 -0.284 0.043 8.483 -17.114 0.403 23 A_G43:C57_A A 43 ? A 57 ? 19 1 1 A G 41 1_555 A C 57 1_555 0.099 -0.182 0.281 6.456 -12.836 -4.963 24 A_G42:C58_A A 42 ? A 58 ? 19 1 1 A C 58 1_555 A A 40 1_555 0.079 1.068 0.300 -12.414 2.579 -168.078 25 A_C59:A41_A A 59 ? A 41 ? 26 2 1 A A 60 1_555 A A 9 1_555 4.094 1.778 -0.489 -2.375 -14.372 -121.123 26 A_A61:A10_A A 61 ? A 10 ? 5 4 1 A G 61 1_555 A C 39 1_555 -0.274 -0.185 -0.015 -3.275 -9.141 0.089 27 A_G62:C40_A A 62 ? A 40 ? 19 1 1 B G 1 1_555 B C 69 1_555 -0.273 -0.108 -0.097 -5.190 -8.595 -4.994 28 B_G2:C70_B B 2 ? B 70 ? 19 1 1 B G 2 1_555 B U 68 1_555 -1.953 -0.453 0.170 -3.417 -17.351 -0.224 29 B_G3:U69_B B 3 ? B 69 ? 28 1 1 B U 3 1_555 B A 67 1_555 -0.281 -0.212 0.326 -3.135 -9.861 0.967 30 B_U4:A68_B B 4 ? B 68 ? 20 1 1 B G 4 1_555 B C 66 1_555 -0.333 -0.206 0.198 -6.041 -17.407 2.148 31 B_G5:C67_B B 5 ? B 67 ? 19 1 1 B U 5 1_555 B A 65 1_555 -0.076 -0.219 0.280 -9.529 -16.729 7.691 32 B_U6:A66_B B 6 ? B 66 ? 20 1 1 B A 6 1_555 B U 64 1_555 0.045 -0.347 0.195 4.584 -7.951 2.280 33 B_A7:U65_B B 7 ? B 65 ? 20 1 1 B U 24 1_555 B U 16 1_555 0.652 -1.591 -0.650 -13.391 -10.517 23.696 34 B_U25:U17_B B 25 ? B 17 ? 16 1 1 B U 25 1_555 B U 15 1_555 -2.733 -1.892 0.390 -4.057 -5.487 15.653 35 B_U26:U16_B B 26 ? B 16 ? 16 1 1 B U 26 1_555 B A 14 1_555 -0.155 -0.116 -0.065 -3.376 -8.242 10.212 36 B_U27:A15_B B 27 ? B 15 ? 20 1 1 B G 27 1_555 B C 13 1_555 0.162 -0.317 -0.084 -3.637 -2.620 -1.191 37 B_G28:C14_B B 28 ? B 14 ? 19 1 1 B A 28 1_555 B U 12 1_555 -0.057 -0.098 0.111 -0.154 -3.769 3.061 38 B_A29:U13_B B 29 ? B 13 ? 20 1 1 B G 29 1_555 B C 11 1_555 -0.294 -0.283 -0.125 -2.400 -13.708 3.500 39 B_G30:C12_B B 30 ? B 12 ? 19 1 1 B C 30 1_555 B G 10 1_555 0.366 -0.136 -0.048 -6.455 -13.981 4.026 40 B_C31:G11_B B 31 ? B 11 ? 19 1 1 B G 31 1_555 B C 38 1_555 -0.191 -0.127 0.323 -2.289 -5.169 -1.546 41 B_G32:C39_B B 32 ? B 39 ? 19 1 1 B U 7 1_555 B A 37 1_555 0.174 -0.092 -0.508 23.644 -7.561 3.037 42 B_U8:A38_B B 8 ? B 38 ? 20 1 1 B U 32 1_555 B G 36 1_555 -0.330 1.157 -0.425 45.281 3.595 -158.810 43 B_U33:G37_B B 33 ? B 37 ? 27 2 1 B A 20 1_555 B A 50 1_555 -4.833 0.996 -0.387 3.619 -11.108 -111.287 44 B_A21:A51_B B 21 ? B 51 ? 5 4 1 B C 47 1_555 B G 22 1_555 0.170 -0.237 0.666 -4.177 -10.706 -3.524 45 B_C48:G23_B B 48 ? B 23 ? 19 1 1 B U 19 1_555 B A 51 1_555 4.222 -1.875 -0.598 -0.007 -8.169 -101.879 46 B_U20:A52_B B 20 ? B 52 ? 24 4 1 B G 23 1_555 B C 46 1_555 0.034 -0.125 0.415 19.900 -8.596 -1.214 47 B_G24:C47_B B 24 ? B 47 ? 19 1 1 B U 53 1_555 B A 45 1_555 0.142 -0.136 -0.742 14.618 -15.974 2.586 48 B_U54:A46_B B 54 ? B 46 ? 20 1 1 B U 54 1_555 B A 44 1_555 -0.209 -0.140 0.026 -1.383 -7.568 5.408 49 B_U55:A45_B B 55 ? B 45 ? 20 1 1 B G 55 1_555 B C 43 1_555 -0.151 -0.167 0.125 1.656 -13.329 -0.804 50 B_G56:C44_B B 56 ? B 44 ? 19 1 1 B C 56 1_555 B G 42 1_555 0.152 -0.151 0.293 -8.407 -15.827 -0.661 51 B_C57:G43_B B 57 ? B 43 ? 19 1 1 B C 57 1_555 B G 41 1_555 0.329 -0.206 0.486 -6.742 -7.358 -5.634 52 B_C58:G42_B B 58 ? B 42 ? 19 1 1 B C 58 1_555 B A 40 1_555 0.130 0.915 0.319 -14.537 0.093 -171.711 53 B_C59:A41_B B 59 ? B 41 ? 26 2 1 B A 60 1_555 B A 9 1_555 4.052 1.506 -0.488 -4.901 -16.096 -114.612 54 B_A61:A10_B B 61 ? B 10 ? 5 4 1 B G 61 1_555 B C 39 1_555 -0.317 -0.073 -0.172 -10.149 -13.948 0.796 55 B_G62:C40_B B 62 ? B 40 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 69 1_555 A G 2 1_555 A U 68 1_555 -0.035 -1.675 2.868 -4.843 11.424 25.905 -5.379 -0.777 1.946 23.821 10.099 28.677 1 AA_G2G3:U69C70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A G 2 1_555 A U 68 1_555 A U 3 1_555 A A 67 1_555 0.040 -1.307 3.164 -0.303 8.091 38.191 -2.864 -0.093 2.839 12.199 0.458 39.008 2 AA_G3U4:A68U69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A U 3 1_555 A A 67 1_555 A G 4 1_555 A C 66 1_555 0.143 -1.646 3.431 -0.331 13.081 29.404 -5.197 -0.315 2.491 24.311 0.615 32.125 3 AA_U4G5:C67A68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A G 4 1_555 A C 66 1_555 A U 5 1_555 A A 65 1_555 0.202 -1.253 3.374 0.094 9.167 31.835 -3.717 -0.339 2.911 16.294 -0.167 33.096 4 AA_G5U6:A66C67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A U 5 1_555 A A 65 1_555 A A 6 1_555 A U 64 1_555 0.391 -1.501 2.933 1.628 15.745 29.326 -4.709 -0.468 1.919 28.624 -2.960 33.243 5 AA_U6A7:U65A66_AA A 6 ? A 66 ? A 7 ? A 65 ? 1 A U 24 1_555 A U 16 1_555 A U 25 1_555 A U 15 1_555 -0.522 -2.427 2.979 0.697 4.325 20.991 -7.986 1.640 2.416 11.708 -1.887 21.438 6 AA_U25U26:U16U17_AA A 25 ? A 17 ? A 26 ? A 16 ? 1 A U 25 1_555 A U 15 1_555 A U 26 1_555 A A 14 1_555 -0.035 -1.406 3.491 -3.766 2.574 40.247 -2.336 -0.394 3.388 3.727 5.452 40.494 7 AA_U26U27:A15U16_AA A 26 ? A 16 ? A 27 ? A 15 ? 1 A U 26 1_555 A A 14 1_555 A G 27 1_555 A C 13 1_555 -0.273 -1.813 2.794 -0.826 6.667 28.771 -4.682 0.395 2.331 13.191 1.635 29.528 8 AA_U27G28:C14A15_AA A 27 ? A 15 ? A 28 ? A 14 ? 1 A G 27 1_555 A C 13 1_555 A A 28 1_555 A U 12 1_555 -0.537 -1.648 2.905 -2.647 7.814 30.381 -4.258 0.577 2.453 14.575 4.937 31.455 9 AA_G28A29:U13C14_AA A 28 ? A 14 ? A 29 ? A 13 ? 1 A A 28 1_555 A U 12 1_555 A G 29 1_555 A C 11 1_555 -0.001 -1.662 3.586 3.820 8.205 33.356 -4.118 0.617 3.084 13.976 -6.507 34.528 10 AA_A29G30:C12U13_AA A 29 ? A 13 ? A 30 ? A 12 ? 1 A G 29 1_555 A C 11 1_555 A C 30 1_555 A G 10 1_555 0.671 -1.595 3.182 -0.218 0.825 38.782 -2.499 -1.037 3.145 1.242 0.329 38.791 11 AA_G30C31:G11C12_AA A 30 ? A 12 ? A 31 ? A 11 ? 1 A C 30 1_555 A G 10 1_555 A G 31 1_555 A C 38 1_555 2.855 -0.372 3.069 7.302 2.567 54.068 -0.559 -2.677 3.379 2.808 -7.987 54.578 12 AA_C31G32:C39G11_AA A 31 ? A 11 ? A 32 ? A 39 ? 1 A G 31 1_555 A C 38 1_555 A U 7 1_555 A A 37 1_555 -1.675 -0.319 2.618 3.004 8.539 47.237 -0.915 2.241 2.424 10.543 -3.709 48.047 13 AA_G32U8:A38C39_AA A 32 ? A 39 ? A 8 ? A 38 ? 1 A U 7 1_555 A A 37 1_555 A U 32 1_555 A G 36 1_555 1.289 -1.689 4.008 11.823 28.572 48.675 -3.589 -0.594 2.911 31.294 -12.949 57.157 14 AA_U8U33:G37A38_AA A 8 ? A 38 ? A 33 ? A 37 ? 1 A A 20 1_555 A A 50 1_555 A C 47 1_555 A G 22 1_555 3.929 0.972 -3.077 -1.897 -12.032 136.958 0.453 -2.099 -3.140 -6.463 1.019 137.213 15 AA_A21C48:G23A51_AA A 21 ? A 51 ? A 48 ? A 23 ? 1 A C 47 1_555 A G 22 1_555 A C 46 1_555 A G 23 1_555 0.094 1.095 -2.933 2.206 -5.317 -30.937 -2.885 -0.186 -2.712 9.860 4.092 -31.455 16 AA_C48C47:G24G23_AA A 48 ? A 23 ? A 47 ? A 24 ? 1 A C 46 1_555 A G 23 1_555 A A 45 1_555 A U 53 1_555 -1.787 0.937 -3.287 2.035 -10.383 -51.236 -1.730 -2.160 -2.989 11.862 2.325 -52.245 17 AA_C47A46:U54G24_AA A 47 ? A 24 ? A 46 ? A 54 ? 1 A A 45 1_555 A U 53 1_555 A A 44 1_555 A U 54 1_555 0.328 2.104 -3.647 -1.705 -8.565 -35.825 -4.540 0.760 -3.062 13.674 -2.721 -36.840 18 AA_A46A45:U55U54_AA A 46 ? A 54 ? A 45 ? A 55 ? 1 A A 44 1_555 A U 54 1_555 A C 43 1_555 A G 55 1_555 -0.881 1.851 -3.372 2.835 -5.499 -27.838 -4.969 -2.412 -2.859 11.254 5.801 -28.504 19 AA_A45C44:G56U55_AA A 45 ? A 55 ? A 44 ? A 56 ? 1 A C 43 1_555 A G 55 1_555 A G 42 1_555 A C 56 1_555 -0.366 1.191 -3.140 -2.348 -6.355 -31.726 -3.172 -0.272 -2.873 11.461 -4.235 -32.423 20 AA_C44G43:C57G56_AA A 44 ? A 56 ? A 43 ? A 57 ? 1 A G 42 1_555 A C 56 1_555 A G 41 1_555 A C 57 1_555 -0.001 1.223 -3.365 -0.860 -10.661 -33.130 -3.633 0.126 -2.847 18.118 -1.462 -34.768 21 AA_G43G42:C58C57_AA A 43 ? A 57 ? A 42 ? A 58 ? 1 A G 41 1_555 A C 57 1_555 A C 58 1_555 A A 40 1_555 0.246 0.737 -3.053 5.129 7.600 -120.512 -0.357 0.097 -3.084 -4.374 2.952 -120.721 22 AA_G42C59:A41C58_AA A 42 ? A 58 ? A 59 ? A 41 ? 1 A C 58 1_555 A A 40 1_555 A A 60 1_555 A A 9 1_555 -1.559 2.998 1.465 -159.533 -80.489 124.850 1.653 0.475 1.318 -40.278 79.833 179.392 23 AA_C59A61:A10A41_AA A 59 ? A 41 ? A 61 ? A 10 ? 1 A A 60 1_555 A A 9 1_555 A G 61 1_555 A C 39 1_555 1.038 -1.372 3.414 -0.310 5.106 -24.515 1.516 2.293 3.633 -11.860 -0.721 -25.035 24 AA_A61G62:C40A10_AA A 61 ? A 10 ? A 62 ? A 40 ? 1 B G 1 1_555 B C 69 1_555 B G 2 1_555 B U 68 1_555 1.055 -2.056 2.965 -2.058 10.957 30.916 -5.130 -2.147 2.064 19.765 3.712 32.819 25 BB_G2G3:U69C70_BB B 2 ? B 70 ? B 3 ? B 69 ? 1 B G 2 1_555 B U 68 1_555 B U 3 1_555 B A 67 1_555 -0.033 -1.378 3.241 -3.331 4.659 35.974 -2.830 -0.395 3.036 7.485 5.352 36.412 26 BB_G3U4:A68U69_BB B 3 ? B 69 ? B 4 ? B 68 ? 1 B U 3 1_555 B A 67 1_555 B G 4 1_555 B C 66 1_555 0.117 -1.705 3.042 1.341 13.831 31.472 -4.682 -0.024 2.130 24.083 -2.335 34.333 27 BB_U4G5:C67A68_BB B 4 ? B 68 ? B 5 ? B 67 ? 1 B G 4 1_555 B C 66 1_555 B U 5 1_555 B A 65 1_555 0.205 -1.455 3.471 -1.606 8.431 29.554 -4.396 -0.701 2.939 16.105 3.067 30.749 28 BB_G5U6:A66C67_BB B 5 ? B 67 ? B 6 ? B 66 ? 1 B U 5 1_555 B A 65 1_555 B A 6 1_555 B U 64 1_555 0.394 -1.541 2.705 3.084 15.349 31.246 -4.274 -0.315 1.804 26.514 -5.327 34.861 29 BB_U6A7:U65A66_BB B 6 ? B 66 ? B 7 ? B 65 ? 1 B U 24 1_555 B U 16 1_555 B U 25 1_555 B U 15 1_555 0.204 -2.493 3.144 -11.634 2.986 16.532 -8.215 -5.176 2.074 8.997 35.059 20.410 30 BB_U25U26:U16U17_BB B 25 ? B 17 ? B 26 ? B 16 ? 1 B U 25 1_555 B U 15 1_555 B U 26 1_555 B A 14 1_555 -0.565 -1.505 3.164 4.149 3.203 43.537 -2.304 1.129 2.988 4.300 -5.569 43.836 31 BB_U26U27:A15U16_BB B 26 ? B 16 ? B 27 ? B 15 ? 1 B U 26 1_555 B A 14 1_555 B G 27 1_555 B C 13 1_555 -1.131 -1.732 3.279 0.118 7.280 26.946 -5.215 2.373 2.721 15.272 -0.248 27.895 32 BB_U27G28:C14A15_BB B 27 ? B 15 ? B 28 ? B 14 ? 1 B G 27 1_555 B C 13 1_555 B A 28 1_555 B U 12 1_555 -0.104 -1.455 3.178 -2.964 8.434 29.833 -4.187 -0.324 2.674 15.938 5.601 31.114 33 BB_G28A29:U13C14_BB B 28 ? B 14 ? B 29 ? B 13 ? 1 B A 28 1_555 B U 12 1_555 B G 29 1_555 B C 11 1_555 0.205 -1.615 3.310 1.750 8.884 30.325 -4.520 -0.070 2.745 16.526 -3.256 31.617 34 BB_A29G30:C12U13_BB B 29 ? B 13 ? B 30 ? B 12 ? 1 B G 29 1_555 B C 11 1_555 B C 30 1_555 B G 10 1_555 0.486 -1.550 3.322 3.975 2.257 36.846 -2.739 -0.228 3.258 3.554 -6.259 37.119 35 BB_G30C31:G11C12_BB B 30 ? B 12 ? B 31 ? B 11 ? 1 B C 30 1_555 B G 10 1_555 B G 31 1_555 B C 38 1_555 3.184 -0.265 3.160 4.140 2.534 55.556 -0.430 -3.166 3.356 2.713 -4.432 55.750 36 BB_C31G32:C39G11_BB B 31 ? B 11 ? B 32 ? B 39 ? 1 B G 31 1_555 B C 38 1_555 B U 7 1_555 B A 37 1_555 -1.813 -0.321 2.565 5.418 7.053 48.990 -0.769 2.454 2.301 8.425 -6.471 49.741 37 BB_G32U8:A38C39_BB B 32 ? B 39 ? B 8 ? B 38 ? 1 B U 7 1_555 B A 37 1_555 B U 32 1_555 B G 36 1_555 1.274 -1.744 3.928 13.438 27.706 46.120 -3.765 -0.470 2.797 31.590 -15.322 54.985 38 BB_U8U33:G37A38_BB B 8 ? B 38 ? B 33 ? B 37 ? 1 B A 20 1_555 B A 50 1_555 B C 47 1_555 B G 22 1_555 4.299 0.262 -3.471 -7.530 -11.044 138.886 0.072 -2.247 -3.583 -5.894 4.018 139.177 39 BB_A21C48:G23A51_BB B 21 ? B 51 ? B 48 ? B 23 ? 1 B C 47 1_555 B G 22 1_555 B U 19 1_555 B A 51 1_555 -5.684 -4.735 1.028 1.486 -24.396 -114.518 2.847 -3.345 0.427 14.413 0.878 -116.180 40 BB_C48U20:A52G23_BB B 48 ? B 23 ? B 20 ? B 52 ? 1 B G 23 1_555 B C 46 1_555 B U 53 1_555 B A 45 1_555 -2.208 -0.505 3.050 -0.438 6.823 55.263 -0.908 2.342 2.989 7.325 0.470 55.651 41 BB_G24U54:A46C47_BB B 24 ? B 47 ? B 54 ? B 46 ? 1 B U 53 1_555 B A 45 1_555 B U 54 1_555 B A 44 1_555 0.224 -2.154 3.736 -1.104 7.652 32.033 -5.190 -0.597 3.142 13.619 1.964 32.929 42 BB_U54U55:A45A46_BB B 54 ? B 46 ? B 55 ? B 45 ? 1 B U 54 1_555 B A 44 1_555 B G 55 1_555 B C 43 1_555 -0.695 -2.076 3.045 -0.690 9.432 24.812 -6.567 1.364 2.142 21.001 1.537 26.527 43 BB_U55G56:C44A45_BB B 55 ? B 45 ? B 56 ? B 44 ? 1 B G 55 1_555 B C 43 1_555 B C 56 1_555 B G 42 1_555 -0.145 -1.640 3.418 -2.196 4.507 36.671 -3.200 -0.072 3.204 7.122 3.470 37.000 44 BB_G56C57:G43C44_BB B 56 ? B 44 ? B 57 ? B 43 ? 1 B C 56 1_555 B G 42 1_555 B C 57 1_555 B G 41 1_555 -0.525 -1.477 3.214 -1.186 4.364 34.248 -3.134 0.708 3.024 7.370 2.004 34.537 45 BB_C57C58:G42G43_BB B 57 ? B 43 ? B 58 ? B 42 ? 1 B C 57 1_555 B G 41 1_555 B C 58 1_555 B A 40 1_555 3.062 -0.769 0.056 -87.508 -142.964 -153.356 0.401 1.521 0.271 71.623 -43.840 -177.153 46 BB_C58C59:A41G42_BB B 58 ? B 42 ? B 59 ? B 41 ? 1 B C 58 1_555 B A 40 1_555 B A 60 1_555 B A 9 1_555 -2.028 2.744 0.995 -160.592 -75.388 50.848 1.645 0.434 1.032 -38.008 80.966 177.658 47 BB_C59A61:A10A41_BB B 59 ? B 41 ? B 61 ? B 10 ? 1 B A 60 1_555 B A 9 1_555 B G 61 1_555 B C 39 1_555 0.971 -1.425 3.571 2.108 5.167 -25.655 1.573 2.777 3.691 -11.465 4.678 -26.245 48 BB_A61G62:C40A10_BB B 61 ? B 10 ? B 62 ? B 40 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Y27 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9IWF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.037615 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008639 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007889 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ #