HEADER TRANSFERASE 29-JUL-24 9IY4 TITLE ITERATIVE ACETYLTRANSFERASE ON LASSO PEPTIDES FROM ACTINOMYCETES IN TITLE 2 COMPLEX WITH ACCOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOSYNNEMA MIRUM (STRAIN ATCC 29888 / DSM SOURCE 3 43827 / JCM 3225 / NBRC 14064 / NCIMB 13271 / NRRL B-12336 / IMRU SOURCE 4 3971 / 101); SOURCE 5 ORGANISM_TAXID: 446462; SOURCE 6 GENE: AMIR_6318; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GCN5-RELATED N-ACETYLTRANSFERASES, ACTINOMYCETES, ACCOA, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.WU,J.XIONG,D.LEI,S.DONG REVDAT 1 13-AUG-25 9IY4 0 JRNL AUTH J.XIONG,S.WU,Z.LIANG,X.GONG,S.FANG,F.TAO,Q.WU,J.CUI,K.GAO, JRNL AUTH 2 S.LUO,D.LEI,S.DONG JRNL TITL ITERATIVE ACYLATION ON MATURE LASSO PEPTIDES BY WIDESPREAD JRNL TITL 2 GNATS FOR LIPOLASSO PRODUCTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, PHENIX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.000 REMARK 3 NUMBER OF PARTICLES : 435000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9IY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300049198. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF ITERATIVE REMARK 245 ACETYLTRANSFERASE AND ACCOA; REMARK 245 ITERATIVE ACETYLTRANSFERASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.623490 -0.781831 0.000000 123.21107 REMARK 350 BIOMT2 2 0.781831 0.623490 0.000000 -43.11303 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.222521 -0.974928 0.000000 233.73904 REMARK 350 BIOMT2 3 0.974928 -0.222521 0.000000 26.33673 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 -0.900969 -0.433884 0.000000 248.35410 REMARK 350 BIOMT2 4 0.433884 -0.900969 0.000000 156.05220 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 -0.900969 0.433884 0.000000 156.05080 REMARK 350 BIOMT2 5 -0.433884 -0.900969 0.000000 248.35498 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 -0.222521 0.974928 0.000000 26.33541 REMARK 350 BIOMT2 6 -0.974928 -0.222521 0.000000 233.73919 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 7 0.623490 0.781831 0.000000 -43.11372 REMARK 350 BIOMT2 7 -0.781831 0.623490 0.000000 123.21083 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 8 -1.000000 0.000000 0.000000 212.73580 REMARK 350 BIOMT2 8 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 9 -0.623490 0.781831 0.000000 89.52461 REMARK 350 BIOMT2 9 0.781831 0.623490 0.000000 -43.11288 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 10 0.222521 0.974928 0.000000 -21.00332 REMARK 350 BIOMT2 10 0.974928 -0.222521 0.000000 26.33707 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 11 0.900969 0.433884 0.000000 -35.61819 REMARK 350 BIOMT2 11 0.433884 -0.900969 0.000000 156.05262 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 12 0.900969 -0.433884 0.000000 56.68528 REMARK 350 BIOMT2 12 -0.433884 -0.900969 0.000000 248.35531 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 13 0.222521 -0.974928 0.000000 186.40070 REMARK 350 BIOMT2 13 -0.974928 -0.222521 0.000000 233.73934 REMARK 350 BIOMT3 13 0.000000 0.000000 -1.000000 211.07400 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 14 -0.623490 -0.781831 0.000000 255.84972 REMARK 350 BIOMT2 14 -0.781831 0.623490 0.000000 123.21083 REMARK 350 BIOMT3 14 0.000000 0.000000 -1.000000 211.07400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: D_1300049195 RELATED DB: PDB-DEV REMARK 900 RELATED ID: EMD-60984 RELATED DB: EMDB REMARK 900 ITERATIVE ACETYLTRANSFERASE ON LASSO PEPTIDES FROM ACTINOMYCETES IN REMARK 900 COMPLEX WITH ACCOA DBREF 9IY4 A 1 196 UNP C6WJ45 C6WJ45_ACTMD 1 196 SEQRES 1 A 196 MET SER PRO GLN ASP ASP LEU ILE VAL TRP LEU ARG GLY SEQRES 2 A 196 ASP ARG ALA GLY LEU GLY PRO PHE SER ALA ASP LEU VAL SEQRES 3 A 196 ASP GLN TYR TRP ARG TRP GLU GLN ASP PRO SER VAL LEU SEQRES 4 A 196 ILE GLY TYR GLY ARG GLN THR PRO ASP SER LEU GLU ASN SEQRES 5 A 196 ARG ARG GLU GLY TYR GLY HIS GLN ALA ARG GLY THR ASP SEQRES 6 A 196 ASP GLN LEU ARG PHE THR VAL TYR ASP LEU THR GLY GLN SEQRES 7 A 196 ASP PRO VAL PRO VAL GLY THR THR ALA VAL LEU ILE ASP SEQRES 8 A 196 HIS HIS VAL ARG THR GLY GLU PHE VAL ILE GLN LEU GLY SEQRES 9 A 196 ALA GLY HIS ARG GLY ARG GLY LEU GLY THR GLU ALA THR SEQRES 10 A 196 ARG LEU THR LEU ASP TYR ALA PHE HIS VAL SER ALA LEU SEQRES 11 A 196 ALA CYS VAL HIS LEU ALA VAL LEU THR PRO ASN THR GLY SEQRES 12 A 196 ALA ILE ALA ALA TYR GLU ARG ALA GLY PHE ARG ARG ILE SEQRES 13 A 196 GLY GLU ARG ARG ASP SER GLY PHE TRP LEU GLY ARG ARG SEQRES 14 A 196 VAL SER GLU THR LEU MET ASP ALA VAL PRO GLU ASP PHE SEQRES 15 A 196 PRO GLY PRO SER VAL VAL ARG GLY PHE VAL GLU GLY GLY SEQRES 16 A 196 ARG HET ACO A 200 51 HETNAM ACO ACETYL COENZYME *A FORMUL 2 ACO C23 H38 N7 O17 P3 S HELIX 1 AA1 SER A 22 ASP A 24 5 3 HELIX 2 AA2 LEU A 25 GLN A 34 1 10 HELIX 3 AA3 ASP A 35 GLY A 43 1 9 HELIX 4 AA4 SER A 49 GLY A 63 1 15 HELIX 5 AA5 ALA A 105 ARG A 108 5 4 HELIX 6 AA6 GLY A 111 VAL A 127 1 17 HELIX 7 AA7 ASN A 141 GLY A 152 1 12 HELIX 8 AA8 VAL A 178 PHE A 182 5 5 HELIX 9 AA9 SER A 186 GLU A 193 1 8 SHEET 1 AA1 8 LEU A 11 ARG A 12 0 SHEET 2 AA1 8 ALA A 16 GLY A 19 -1 O LEU A 18 N LEU A 11 SHEET 3 AA1 8 GLN A 67 ASP A 74 -1 O TYR A 73 N GLY A 17 SHEET 4 AA1 8 VAL A 81 ASP A 91 -1 O THR A 86 N PHE A 70 SHEET 5 AA1 8 THR A 96 LEU A 103 -1 O THR A 96 N ASP A 91 SHEET 6 AA1 8 CYS A 132 LEU A 138 1 O HIS A 134 N PHE A 99 SHEET 7 AA1 8 ARG A 168 ALA A 177 -1 O THR A 173 N VAL A 137 SHEET 8 AA1 8 ARG A 154 TRP A 165 -1 N ILE A 156 O LEU A 174 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1483 1484 1488 CONECT 1484 1483 1485 CONECT 1485 1484 1486 CONECT 1486 1485 1487 1492 CONECT 1487 1486 1488 1490 CONECT 1488 1483 1487 1489 CONECT 1489 1488 CONECT 1490 1487 1491 CONECT 1491 1490 1492 CONECT 1492 1486 1491 1493 CONECT 1493 1492 1494 1503 CONECT 1494 1493 1495 1496 CONECT 1495 1494 CONECT 1496 1494 1497 1502 CONECT 1497 1496 1498 CONECT 1498 1497 1499 1500 1501 CONECT 1499 1498 CONECT 1500 1498 CONECT 1501 1498 CONECT 1502 1496 1503 1504 CONECT 1503 1493 1502 CONECT 1504 1502 1505 CONECT 1505 1504 1506 CONECT 1506 1505 1507 1508 1509 CONECT 1507 1506 CONECT 1508 1506 CONECT 1509 1506 1510 CONECT 1510 1509 1511 1512 1513 CONECT 1511 1510 CONECT 1512 1510 CONECT 1513 1510 1515 CONECT 1514 1515 1516 1517 1518 CONECT 1515 1513 1514 CONECT 1516 1514 CONECT 1517 1514 CONECT 1518 1514 1519 1520 CONECT 1519 1518 CONECT 1520 1518 1521 1522 CONECT 1521 1520 CONECT 1522 1520 1523 CONECT 1523 1522 1524 CONECT 1524 1523 1525 CONECT 1525 1524 1526 1527 CONECT 1526 1525 CONECT 1527 1525 1528 CONECT 1528 1527 1529 CONECT 1529 1528 1530 CONECT 1530 1529 1531 CONECT 1531 1530 1532 1533 CONECT 1532 1531 CONECT 1533 1531 MASTER 168 0 1 9 8 0 0 6 1532 1 51 16 END