HEADER VIRAL PROTEIN 01-AUG-24 9IZN TITLE CRYSTAL STRUCTURE OF HKU1A RBD BOUND TO TMPRSS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEASE SERINE 2; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: SERINE PROTEASE 10; COMPND 5 EC: 3.4.21.122; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SPIKE PROTEIN S1; COMPND 10 CHAIN: A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMPRSS2, PRSS10; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS HKU1 (ISOLATE N1); SOURCE 10 ORGANISM_TAXID: 443239; SOURCE 11 GENE: S, 3; SOURCE 12 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 274590 KEYWDS COMPLEX OF A HUMAN CORONAVIRUS SPIKE PROTEIN BOUND TO RECEPTOR, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,Y.XU,S.ZHANG REVDAT 1 23-OCT-24 9IZN 0 JRNL AUTH W.WANG,J.GUAN,M.REN,Z.LI,W.JI,R.CHEN,Y.XU,S.ZHANG JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF HUMAN CORONAVIRUS HKU1 JRNL TITL 2 RECEPTOR BINDING DOMAIN BOUND TO TMPRSS2 RECEPTOR JRNL REF HLIFE 2024 JRNL REFN ESSN 2949-9283 JRNL DOI 10.1016/J.HLIFE.2024.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9100 - 6.2300 1.00 2896 140 0.1982 0.2479 REMARK 3 2 6.2300 - 4.9700 1.00 2768 151 0.1800 0.2079 REMARK 3 3 4.9700 - 4.3500 1.00 2750 122 0.1542 0.1862 REMARK 3 4 4.3500 - 3.9500 1.00 2704 142 0.1660 0.2253 REMARK 3 5 3.9500 - 3.6700 1.00 2713 149 0.1948 0.2336 REMARK 3 6 3.6700 - 3.4600 1.00 2691 139 0.2165 0.2851 REMARK 3 7 3.4600 - 3.2900 1.00 2700 141 0.2327 0.2806 REMARK 3 8 3.2900 - 3.1400 1.00 2665 128 0.2431 0.2789 REMARK 3 9 3.1400 - 3.0200 1.00 2679 138 0.2558 0.3313 REMARK 3 10 3.0200 - 2.9200 1.00 2686 136 0.2633 0.2926 REMARK 3 11 2.9200 - 2.8300 1.00 2686 142 0.2801 0.3626 REMARK 3 12 2.8300 - 2.7500 1.00 2647 131 0.2892 0.3352 REMARK 3 13 2.7500 - 2.6700 1.00 2678 135 0.3035 0.3268 REMARK 3 14 2.6700 - 2.6100 1.00 2645 132 0.3092 0.3373 REMARK 3 15 2.6100 - 2.5500 1.00 2654 140 0.3312 0.3808 REMARK 3 16 2.5500 - 2.5000 1.00 2664 132 0.3605 0.3768 REMARK 3 17 2.5000 - 2.4500 1.00 2601 146 0.3752 0.3941 REMARK 3 18 2.4500 - 2.4000 0.99 2653 134 0.3784 0.4398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 NULL REMARK 3 ANGLE : 0.514 NULL REMARK 3 CHIRALITY : 0.047 826 REMARK 3 PLANARITY : 0.004 991 REMARK 3 DIHEDRAL : 14.257 2005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5285 -38.6284 35.9654 REMARK 3 T TENSOR REMARK 3 T11: 1.7944 T22: 1.5128 REMARK 3 T33: 1.2867 T12: 0.3216 REMARK 3 T13: 0.0456 T23: -0.2523 REMARK 3 L TENSOR REMARK 3 L11: 0.1390 L22: 0.2039 REMARK 3 L33: 0.2451 L12: -0.0576 REMARK 3 L13: 0.2050 L23: 0.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.1340 S12: 1.1347 S13: -0.2106 REMARK 3 S21: -1.2436 S22: 0.2826 S23: -0.3919 REMARK 3 S31: 0.1795 S32: 0.1157 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5441 -34.4053 36.1164 REMARK 3 T TENSOR REMARK 3 T11: 1.5142 T22: 1.1498 REMARK 3 T33: 1.0508 T12: 0.4421 REMARK 3 T13: 0.1522 T23: -0.1258 REMARK 3 L TENSOR REMARK 3 L11: 0.2145 L22: 0.0517 REMARK 3 L33: 0.2979 L12: -0.0817 REMARK 3 L13: -0.0360 L23: -0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.5206 S12: 0.3588 S13: -0.1625 REMARK 3 S21: -1.2586 S22: 0.0872 S23: -0.5707 REMARK 3 S31: -0.0308 S32: 0.1105 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 246 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7324 -19.7511 50.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.8356 T22: 0.5239 REMARK 3 T33: 0.5682 T12: 0.1982 REMARK 3 T13: -0.1730 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 2.0104 REMARK 3 L33: 1.3794 L12: -1.0646 REMARK 3 L13: 0.9332 L23: -0.9838 REMARK 3 S TENSOR REMARK 3 S11: 0.4862 S12: 0.2620 S13: 0.0648 REMARK 3 S21: -1.0334 S22: -0.4246 S23: 0.2306 REMARK 3 S31: 0.2989 S32: 0.3586 S33: 0.0024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 367 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4486 -22.9080 63.8367 REMARK 3 T TENSOR REMARK 3 T11: 0.6859 T22: 0.5911 REMARK 3 T33: 0.6178 T12: 0.1295 REMARK 3 T13: -0.0634 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 0.3969 L22: 1.0255 REMARK 3 L33: 0.6456 L12: 0.2337 REMARK 3 L13: 0.1859 L23: -0.7178 REMARK 3 S TENSOR REMARK 3 S11: 0.1825 S12: 0.2012 S13: -0.1412 REMARK 3 S21: -0.3421 S22: -0.2650 S23: 0.0364 REMARK 3 S31: 0.3324 S32: 0.2769 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 411 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7653 -27.6062 66.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.6636 T22: 0.4922 REMARK 3 T33: 0.6006 T12: 0.0908 REMARK 3 T13: -0.0411 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9032 L22: 0.3744 REMARK 3 L33: 0.5470 L12: -0.4842 REMARK 3 L13: 0.4634 L23: -0.5416 REMARK 3 S TENSOR REMARK 3 S11: 0.2130 S12: 0.2157 S13: 0.0805 REMARK 3 S21: -0.2874 S22: -0.2381 S23: 0.0588 REMARK 3 S31: -0.0174 S32: -0.0586 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 472 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4652 -33.7338 48.4467 REMARK 3 T TENSOR REMARK 3 T11: 1.1978 T22: 0.6410 REMARK 3 T33: 0.5807 T12: 0.3183 REMARK 3 T13: -0.1761 T23: -0.1528 REMARK 3 L TENSOR REMARK 3 L11: 0.4469 L22: 0.2254 REMARK 3 L33: 0.3408 L12: 0.3336 REMARK 3 L13: -0.3718 L23: -0.2419 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: 0.3811 S13: -0.4869 REMARK 3 S21: -0.7559 S22: -0.3441 S23: -0.0959 REMARK 3 S31: 0.2911 S32: 0.3860 S33: -0.0443 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0629 -32.3779 101.0351 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.5133 REMARK 3 T33: 0.5100 T12: -0.0133 REMARK 3 T13: 0.0264 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.9590 L22: 0.6409 REMARK 3 L33: 1.4987 L12: 0.5454 REMARK 3 L13: 1.2768 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.1492 S13: -0.0536 REMARK 3 S21: -0.0454 S22: 0.0474 S23: -0.0249 REMARK 3 S31: 0.0474 S32: 0.1058 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 674 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3460 -8.6493 131.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.6502 T22: 0.8382 REMARK 3 T33: 0.5494 T12: -0.0699 REMARK 3 T13: -0.1004 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.2821 L22: 0.8092 REMARK 3 L33: 0.5645 L12: 0.3380 REMARK 3 L13: 0.6926 L23: 0.7137 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: 0.1569 S13: 0.0993 REMARK 3 S21: -0.1464 S22: 0.1086 S23: 0.2220 REMARK 3 S31: -0.3508 S32: 0.1566 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9IZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 06-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300049973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V TACSIMATE PH 7.0, 5% V/V 2 REMARK 280 -PROPANOL, 0.1 M IMIDAZOLE (PH 7.0) AND 8% W/V POLYETHYLENE REMARK 280 GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.66200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.68200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.17900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 128.68200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.66200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.17900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 109 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 LYS B 112 REMARK 465 CYS B 113 REMARK 465 SER B 114 REMARK 465 ASN B 115 REMARK 465 SER B 116 REMARK 465 GLY B 117 REMARK 465 ILE B 118 REMARK 465 GLU B 119 REMARK 465 CYS B 120 REMARK 465 ASP B 121 REMARK 465 SER B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 THR B 125 REMARK 465 CYS B 126 REMARK 465 ILE B 127 REMARK 465 ASN B 128 REMARK 465 PRO B 129 REMARK 465 SER B 130 REMARK 465 ASN B 131 REMARK 465 TRP B 132 REMARK 465 CYS B 133 REMARK 465 ASP B 134 REMARK 465 GLY B 135 REMARK 465 VAL B 136 REMARK 465 SER B 137 REMARK 465 HIS B 138 REMARK 465 CYS B 139 REMARK 465 PRO B 140 REMARK 465 LYS B 211 REMARK 465 LEU B 212 REMARK 465 ASN B 213 REMARK 465 THR B 214 REMARK 465 SER B 215 REMARK 465 ALA B 216 REMARK 465 GLY B 217 REMARK 465 ASN B 218 REMARK 465 VAL B 219 REMARK 465 SER B 250 REMARK 465 SER B 251 REMARK 465 ARG B 252 REMARK 465 GLN B 253 REMARK 465 SER B 254 REMARK 465 GLN B 255 REMARK 465 ILE B 256 REMARK 465 VAL B 257 REMARK 465 GLY B 258 REMARK 465 GLY B 259 REMARK 465 GLY B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 SER A 307 REMARK 465 GLY A 308 REMARK 465 PHE A 309 REMARK 465 THR A 310 REMARK 465 TYR A 675 REMARK 465 ALA A 676 REMARK 465 GLY A 677 REMARK 465 HIS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 HIS A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 HIS A 685 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 343 O HOH B 601 2.19 REMARK 500 O GLU B 260 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 145 -125.57 58.78 REMARK 500 ARG B 147 -168.10 64.63 REMARK 500 CYS B 148 -134.41 -128.32 REMARK 500 PRO B 170 -179.48 -69.99 REMARK 500 LYS B 191 -133.30 60.97 REMARK 500 TYR B 195 -67.37 -121.60 REMARK 500 TYR B 222 70.85 51.79 REMARK 500 SER B 228 -143.19 -152.68 REMARK 500 ASP B 229 -11.93 -155.02 REMARK 500 SER B 233 -1.30 64.46 REMARK 500 VAL B 280 -51.28 -128.33 REMARK 500 ASN B 358 -161.76 -163.58 REMARK 500 VAL B 415 -94.60 -124.17 REMARK 500 ASP B 417 102.98 -48.46 REMARK 500 ASN B 433 71.23 -110.71 REMARK 500 SER B 463 86.29 -164.44 REMARK 500 TYR B 469 -0.61 74.53 REMARK 500 ASN A 413 -66.50 -139.14 REMARK 500 ASN A 451 -100.54 -112.61 REMARK 500 ASN A 470 -175.66 -67.79 REMARK 500 LEU A 510 -116.54 50.75 REMARK 500 CYS A 518 -168.19 -116.04 REMARK 500 SER A 562 -150.38 -114.45 REMARK 500 ASN A 644 58.96 -95.59 REMARK 500 ASN A 656 -130.17 65.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 713 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 6.65 ANGSTROMS DBREF 9IZN B 109 492 UNP O15393 TMPS2_HUMAN 109 492 DBREF 9IZN A 307 677 UNP Q5MQD0 SPIKE_CVHN1 307 677 SEQADV 9IZN GLN B 255 UNP O15393 ARG 255 ENGINEERED MUTATION SEQADV 9IZN HIS B 493 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 494 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 495 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 496 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 497 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 498 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 499 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS B 500 UNP O15393 EXPRESSION TAG SEQADV 9IZN HIS A 678 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 679 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 680 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 681 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 682 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 683 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 684 UNP Q5MQD0 EXPRESSION TAG SEQADV 9IZN HIS A 685 UNP Q5MQD0 EXPRESSION TAG SEQRES 1 B 392 MET GLY SER LYS CYS SER ASN SER GLY ILE GLU CYS ASP SEQRES 2 B 392 SER SER GLY THR CYS ILE ASN PRO SER ASN TRP CYS ASP SEQRES 3 B 392 GLY VAL SER HIS CYS PRO GLY GLY GLU ASP GLU ASN ARG SEQRES 4 B 392 CYS VAL ARG LEU TYR GLY PRO ASN PHE ILE LEU GLN VAL SEQRES 5 B 392 TYR SER SER GLN ARG LYS SER TRP HIS PRO VAL CYS GLN SEQRES 6 B 392 ASP ASP TRP ASN GLU ASN TYR GLY ARG ALA ALA CYS ARG SEQRES 7 B 392 ASP MET GLY TYR LYS ASN ASN PHE TYR SER SER GLN GLY SEQRES 8 B 392 ILE VAL ASP ASP SER GLY SER THR SER PHE MET LYS LEU SEQRES 9 B 392 ASN THR SER ALA GLY ASN VAL ASP ILE TYR LYS LYS LEU SEQRES 10 B 392 TYR HIS SER ASP ALA CYS SER SER LYS ALA VAL VAL SER SEQRES 11 B 392 LEU ARG CYS ILE ALA CYS GLY VAL ASN LEU ASN SER SER SEQRES 12 B 392 ARG GLN SER GLN ILE VAL GLY GLY GLU SER ALA LEU PRO SEQRES 13 B 392 GLY ALA TRP PRO TRP GLN VAL SER LEU HIS VAL GLN ASN SEQRES 14 B 392 VAL HIS VAL CYS GLY GLY SER ILE ILE THR PRO GLU TRP SEQRES 15 B 392 ILE VAL THR ALA ALA HIS CYS VAL GLU LYS PRO LEU ASN SEQRES 16 B 392 ASN PRO TRP HIS TRP THR ALA PHE ALA GLY ILE LEU ARG SEQRES 17 B 392 GLN SER PHE MET PHE TYR GLY ALA GLY TYR GLN VAL GLU SEQRES 18 B 392 LYS VAL ILE SER HIS PRO ASN TYR ASP SER LYS THR LYS SEQRES 19 B 392 ASN ASN ASP ILE ALA LEU MET LYS LEU GLN LYS PRO LEU SEQRES 20 B 392 THR PHE ASN ASP LEU VAL LYS PRO VAL CYS LEU PRO ASN SEQRES 21 B 392 PRO GLY MET MET LEU GLN PRO GLU GLN LEU CYS TRP ILE SEQRES 22 B 392 SER GLY TRP GLY ALA THR GLU GLU LYS GLY LYS THR SER SEQRES 23 B 392 GLU VAL LEU ASN ALA ALA LYS VAL LEU LEU ILE GLU THR SEQRES 24 B 392 GLN ARG CYS ASN SER ARG TYR VAL TYR ASP ASN LEU ILE SEQRES 25 B 392 THR PRO ALA MET ILE CYS ALA GLY PHE LEU GLN GLY ASN SEQRES 26 B 392 VAL ASP SER CYS GLN GLY ASP SER GLY GLY PRO LEU VAL SEQRES 27 B 392 THR SER LYS ASN ASN ILE TRP TRP LEU ILE GLY ASP THR SEQRES 28 B 392 SER TRP GLY SER GLY CYS ALA LYS ALA TYR ARG PRO GLY SEQRES 29 B 392 VAL TYR GLY ASN VAL MET VAL PHE THR ASP TRP ILE TYR SEQRES 30 B 392 ARG GLN MET ARG ALA ASP GLY HIS HIS HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS SEQRES 1 A 379 SER GLY PHE THR VAL LYS PRO VAL ALA THR VAL HIS ARG SEQRES 2 A 379 ARG ILE PRO ASP LEU PRO ASP CYS ASP ILE ASP LYS TRP SEQRES 3 A 379 LEU ASN ASN PHE ASN VAL PRO SER PRO LEU ASN TRP GLU SEQRES 4 A 379 ARG LYS ILE PHE SER ASN CYS ASN PHE ASN LEU SER THR SEQRES 5 A 379 LEU LEU ARG LEU VAL HIS THR ASP SER PHE SER CYS ASN SEQRES 6 A 379 ASN PHE ASP GLU SER LYS ILE TYR GLY SER CYS PHE LYS SEQRES 7 A 379 SER ILE VAL LEU ASP LYS PHE ALA ILE PRO ASN SER ARG SEQRES 8 A 379 ARG SER ASP LEU GLN LEU GLY SER SER GLY PHE LEU GLN SEQRES 9 A 379 SER SER ASN TYR LYS ILE ASP THR THR SER SER SER CYS SEQRES 10 A 379 GLN LEU TYR TYR SER LEU PRO ALA ILE ASN VAL THR ILE SEQRES 11 A 379 ASN ASN TYR ASN PRO SER SER TRP ASN ARG ARG TYR GLY SEQRES 12 A 379 PHE ASN ASN PHE ASN LEU SER SER HIS SER VAL VAL TYR SEQRES 13 A 379 SER ARG TYR CYS PHE SER VAL ASN ASN THR PHE CYS PRO SEQRES 14 A 379 CYS ALA LYS PRO SER PHE ALA SER SER CYS LYS SER HIS SEQRES 15 A 379 LYS PRO PRO SER ALA SER CYS PRO ILE GLY THR ASN TYR SEQRES 16 A 379 ARG SER CYS GLU SER THR THR VAL LEU ASP HIS THR ASP SEQRES 17 A 379 TRP CYS ARG CYS SER CYS LEU PRO ASP PRO ILE THR ALA SEQRES 18 A 379 TYR ASP PRO ARG SER CYS SER GLN LYS LYS SER LEU VAL SEQRES 19 A 379 GLY VAL GLY GLU HIS CYS ALA GLY PHE GLY VAL ASP GLU SEQRES 20 A 379 GLU LYS CYS GLY VAL LEU ASP GLY SER TYR ASN VAL SER SEQRES 21 A 379 CYS LEU CYS SER THR ASP ALA PHE LEU GLY TRP SER TYR SEQRES 22 A 379 ASP THR CYS VAL SER ASN ASN ARG CYS ASN ILE PHE SER SEQRES 23 A 379 ASN PHE ILE LEU ASN GLY ILE ASN SER GLY THR THR CYS SEQRES 24 A 379 SER ASN ASP LEU LEU GLN PRO ASN THR GLU VAL PHE THR SEQRES 25 A 379 ASP VAL CYS VAL ASP TYR ASP LEU TYR GLY ILE THR GLY SEQRES 26 A 379 GLN GLY ILE PHE LYS GLU VAL SER ALA VAL TYR TYR ASN SEQRES 27 A 379 SER TRP GLN ASN LEU LEU TYR ASP SER ASN GLY ASN ILE SEQRES 28 A 379 ILE GLY PHE LYS ASP PHE VAL THR ASN LYS THR TYR ASN SEQRES 29 A 379 ILE PHE PRO CYS TYR ALA GLY HIS HIS HIS HIS HIS HIS SEQRES 30 A 379 HIS HIS HET NAG A 700 14 HET NAG A 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 HOH *281(H2 O) HELIX 1 AA1 GLY B 153 PHE B 156 5 4 HELIX 2 AA2 ASN B 177 GLY B 189 1 13 HELIX 3 AA3 CYS B 231 ALA B 235 5 5 HELIX 4 AA4 ALA B 294 GLU B 299 5 6 HELIX 5 AA5 ASN B 304 HIS B 307 5 4 HELIX 6 AA6 ARG B 316 MET B 320 5 5 HELIX 7 AA7 GLU B 406 ASN B 411 1 6 HELIX 8 AA8 PHE B 480 ALA B 490 1 11 HELIX 9 AA9 ASP A 328 ASN A 334 1 7 HELIX 10 AB1 PRO A 341 TRP A 344 5 4 HELIX 11 AB2 ASN A 355 VAL A 363 1 9 HELIX 12 AB3 ASP A 374 ILE A 378 5 5 HELIX 13 AB4 PRO A 394 GLN A 402 5 9 HELIX 14 AB5 GLY A 407 ASN A 413 1 7 HELIX 15 AB6 ILE A 432 VAL A 434 5 3 HELIX 16 AB7 SER A 442 TYR A 448 1 7 HELIX 17 AB8 LYS A 478 SER A 483 1 6 HELIX 18 AB9 ASP A 529 CYS A 533 5 5 HELIX 19 AC1 GLU A 553 CYS A 556 5 4 HELIX 20 AC2 SER A 570 ASP A 572 5 3 HELIX 21 AC3 SER A 639 TYR A 643 5 5 SHEET 1 AA1 3 VAL B 149 TYR B 152 0 SHEET 2 AA1 3 ILE B 157 SER B 162 -1 O ILE B 157 N TYR B 152 SHEET 3 AA1 3 SER B 167 PRO B 170 -1 O HIS B 169 N VAL B 160 SHEET 1 AA2 2 SER B 196 ILE B 200 0 SHEET 2 AA2 2 VAL B 236 ARG B 240 -1 O SER B 238 N GLN B 198 SHEET 1 AA3 7 GLN B 270 VAL B 275 0 SHEET 2 AA3 7 VAL B 278 THR B 287 -1 O VAL B 280 N LEU B 273 SHEET 3 AA3 7 TRP B 290 THR B 293 -1 O VAL B 292 N SER B 284 SHEET 4 AA3 7 ALA B 347 LEU B 351 -1 O ALA B 347 N THR B 293 SHEET 5 AA3 7 TYR B 326 SER B 333 -1 N GLU B 329 O LYS B 350 SHEET 6 AA3 7 THR B 309 ALA B 312 -1 N ALA B 310 O TYR B 326 SHEET 7 AA3 7 GLN B 270 VAL B 275 -1 N HIS B 274 O THR B 309 SHEET 1 AA4 7 LEU B 378 GLY B 383 0 SHEET 2 AA4 7 ASN B 398 ILE B 405 -1 O VAL B 402 N CYS B 379 SHEET 3 AA4 7 MET B 424 GLY B 428 -1 O GLY B 428 N LEU B 403 SHEET 4 AA4 7 GLY B 472 ASN B 476 -1 O TYR B 474 N ILE B 425 SHEET 5 AA4 7 ILE B 452 TRP B 461 -1 N TRP B 461 O VAL B 473 SHEET 6 AA4 7 PRO B 444 LYS B 449 -1 N LEU B 445 O ILE B 456 SHEET 7 AA4 7 LEU B 378 GLY B 383 -1 N TRP B 380 O VAL B 446 SHEET 1 AA5 6 VAL A 317 ARG A 319 0 SHEET 2 AA5 6 CYS A 621 LEU A 626 1 O ASP A 625 N ARG A 319 SHEET 3 AA5 6 ILE A 629 VAL A 638 -1 O ILE A 629 N LEU A 626 SHEET 4 AA5 6 THR A 668 PHE A 672 -1 O ASN A 670 N LYS A 636 SHEET 5 AA5 6 ASN A 656 LYS A 661 -1 N ILE A 658 O ILE A 671 SHEET 6 AA5 6 LEU A 649 ASP A 652 -1 N LEU A 650 O GLY A 659 SHEET 1 AA6 2 ASN A 337 PRO A 339 0 SHEET 2 AA6 2 THR A 435 ASN A 437 1 O ASN A 437 N VAL A 338 SHEET 1 AA7 5 GLU A 345 PHE A 349 0 SHEET 2 AA7 5 SER A 385 ALA A 392 -1 O ILE A 386 N PHE A 349 SHEET 3 AA7 5 ARG A 587 ASN A 597 -1 O PHE A 591 N PHE A 391 SHEET 4 AA7 5 SER A 422 PRO A 430 -1 N CYS A 423 O PHE A 594 SHEET 5 AA7 5 HIS A 364 ASN A 371 -1 N SER A 369 O GLN A 424 SHEET 1 AA8 3 ASN A 353 PHE A 354 0 SHEET 2 AA8 3 THR A 604 SER A 606 1 O CYS A 605 N PHE A 354 SHEET 3 AA8 3 CYS A 382 PHE A 383 -1 N PHE A 383 O THR A 604 SHEET 1 AA9 2 SER A 459 SER A 463 0 SHEET 2 AA9 2 TRP A 577 THR A 581 -1 O ASP A 580 N VAL A 460 SHEET 1 AB1 2 PHE A 467 SER A 468 0 SHEET 2 AB1 2 LYS A 536 LYS A 537 -1 O LYS A 536 N SER A 468 SHEET 1 AB2 2 CYS A 504 VAL A 509 0 SHEET 2 AB2 2 HIS A 512 CYS A 518 -1 O TRP A 515 N THR A 507 SHEET 1 AB3 2 GLY A 550 VAL A 551 0 SHEET 2 AB3 2 PHE A 574 LEU A 575 -1 O LEU A 575 N GLY A 550 SSBOND 1 CYS B 172 CYS B 231 1555 1555 2.03 SSBOND 2 CYS B 185 CYS B 241 1555 1555 2.03 SSBOND 3 CYS B 244 CYS B 365 1555 1555 2.03 SSBOND 4 CYS B 281 CYS B 297 1555 1555 2.04 SSBOND 5 CYS B 410 CYS B 426 1555 1555 2.04 SSBOND 6 CYS B 437 CYS B 465 1555 1555 2.04 SSBOND 7 CYS A 327 CYS A 352 1555 1555 2.03 SSBOND 8 CYS A 370 CYS A 423 1555 1555 2.04 SSBOND 9 CYS A 382 CYS A 605 1555 1555 2.03 SSBOND 10 CYS A 466 CYS A 546 1555 1555 2.04 SSBOND 11 CYS A 474 CYS A 495 1555 1555 2.03 SSBOND 12 CYS A 476 CYS A 567 1555 1555 2.03 SSBOND 13 CYS A 485 CYS A 516 1555 1555 2.04 SSBOND 14 CYS A 504 CYS A 518 1555 1555 2.03 SSBOND 15 CYS A 520 CYS A 533 1555 1555 2.04 SSBOND 16 CYS A 556 CYS A 569 1555 1555 2.04 SSBOND 17 CYS A 582 CYS A 588 1555 1555 2.04 SSBOND 18 CYS A 621 CYS A 674 1555 1555 2.03 LINK ND2 ASN A 355 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 470 C1 NAG A 700 1555 1555 1.45 CISPEP 1 LYS B 300 PRO B 301 0 5.48 CISPEP 2 LEU A 521 PRO A 522 0 -3.90 CRYST1 63.324 78.358 257.364 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015792 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003886 0.00000