HEADER LIPID BINDING PROTEIN 01-AUG-24 9J01 TITLE CRYSTAL STRUCTURE SENSORY APPENDAGE PROTEIN 2 FROM ANOPHELES TITLE 2 CULICIFACIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOSENSORY PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES CULICIFACIES; SOURCE 3 ORGANISM_TAXID: 139723; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS SENSORY APPENDAGE PROTEIN 2, SAP2, MOSQUITO, OLFACTION, HYDROPHOBIC KEYWDS 2 CHEMICALS, VECTOR CONTROL, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GOSWAMI,S.BISWAS,R.L.BARBOSA,S.SUNG,J.A.MARQUEZ,S.CHAKRABORTI, AUTHOR 2 Y.MANICKAM REVDAT 1 06-AUG-25 9J01 0 JRNL AUTH R.GOSWAMI,S.BISWAS,R.L.BARBOSA,S.SUNG,J.A.MARQUEZ, JRNL AUTH 2 S.CHAKRABORTI,Y.MANICKAM JRNL TITL CRYSTAL STRUCTURE SENSORY APPENDAGE PROTEIN 2 FROM ANOPHELES JRNL TITL 2 CULICIFACIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15RC1_3423: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 11986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3160 - 2.5565 1.00 2975 159 0.1748 0.2478 REMARK 3 2 2.5565 - 2.0293 1.00 2914 158 0.1947 0.1995 REMARK 3 3 2.0293 - 1.7728 1.00 2899 158 0.1955 0.2376 REMARK 3 4 1.7728 - 1.6110 0.89 2594 129 0.2767 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 768 REMARK 3 ANGLE : 1.161 1035 REMARK 3 CHIRALITY : 0.070 112 REMARK 3 PLANARITY : 0.007 135 REMARK 3 DIHEDRAL : 3.008 475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.9985 -3.4800 -10.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.1960 REMARK 3 T33: 0.2023 T12: 0.0035 REMARK 3 T13: 0.0141 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4457 L22: 1.0656 REMARK 3 L33: 2.1849 L12: 0.6460 REMARK 3 L13: 0.3575 L23: 0.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0936 S13: 0.0574 REMARK 3 S21: -0.0816 S22: -0.0184 S23: 0.0889 REMARK 3 S31: -0.0910 S32: -0.0848 S33: 0.0040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9J01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9654 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 37.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 1.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE PH 4.5, 36% V/V PEG 400, 0.05M CADMIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.53750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 THR A 6 REMARK 465 GLU A 101 REMARK 465 GLU A 102 REMARK 465 ALA A 103 REMARK 465 GLN A 104 REMARK 465 LYS A 105 REMARK 465 GLU A 106 REMARK 465 GLY A 107 REMARK 465 ILE A 108 REMARK 465 LYS A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 58 CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 64 CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 HOH A 348 O 106.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 21 OD2 51.1 REMARK 620 3 HOH A 364 O 90.5 140.6 REMARK 620 4 HOH A 367 O 163.8 114.7 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD1 REMARK 620 2 ASP A 33 OD2 52.8 REMARK 620 3 ASP A 40 OD2 66.4 114.8 REMARK 620 4 HOH A 318 O 72.0 118.2 7.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 43 OE1 REMARK 620 2 GLU A 43 OE2 50.8 REMARK 620 3 HOH A 303 O 60.3 108.6 REMARK 620 4 HOH A 339 O 117.5 68.7 147.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 O REMARK 620 2 GLU A 97 OE1 78.9 REMARK 620 3 HOH A 338 O 83.3 69.1 REMARK 620 N 1 2 DBREF1 9J01 A 2 111 UNP A0A182MAD2_9DIPT DBREF2 9J01 A A0A182MAD2 18 127 SEQADV 9J01 MET A 1 UNP A0A182MAD INITIATING METHIONINE SEQRES 1 A 111 MET GLN GLU GLN TYR THR THR LYS TYR ASP GLY ILE ASP SEQRES 2 A 111 LEU ASP GLU ILE LEU LYS SER ASP ARG LEU PHE ASN ASN SEQRES 3 A 111 TYR PHE LYS CYS LEU MET ASP GLU GLY ARG CYS THR PRO SEQRES 4 A 111 ASP GLY ASN GLU LEU LYS LYS ILE LEU PRO GLU ALA LEU SEQRES 5 A 111 GLN THR ASN CYS ALA LYS CYS SER GLU LYS GLN ARG SER SEQRES 6 A 111 GLY ALA ILE LYS VAL ILE ASN TYR VAL ILE GLU ASN ARG SEQRES 7 A 111 LYS GLU GLN TRP ASP ALA LEU GLN LYS LYS TYR ASP PRO SEQRES 8 A 111 GLU ASN LEU TYR VAL GLU LYS TYR ARG GLU GLU ALA GLN SEQRES 9 A 111 LYS GLU GLY ILE LYS LEU GLU HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CL A 206 1 HET CL A 207 1 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CD 5(CD 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *69(H2 O) HELIX 1 AA1 LEU A 14 LYS A 19 1 6 HELIX 2 AA2 SER A 20 MET A 32 1 13 HELIX 3 AA3 THR A 38 ASN A 55 1 18 HELIX 4 AA4 SER A 60 ARG A 78 1 19 HELIX 5 AA5 ARG A 78 ASP A 90 1 13 HELIX 6 AA6 ASN A 93 TYR A 99 1 7 SHEET 1 AA1 2 LYS A 8 TYR A 9 0 SHEET 2 AA1 2 ILE A 12 ASP A 13 -1 O ILE A 12 N TYR A 9 SSBOND 1 CYS A 30 CYS A 37 1555 1555 2.05 SSBOND 2 CYS A 56 CYS A 59 1555 1555 2.04 LINK OD2 ASP A 13 CD CD A 203 1555 1555 2.43 LINK OD1 ASP A 21 CD CD A 202 1555 1555 2.65 LINK OD2 ASP A 21 CD CD A 202 1555 1555 2.51 LINK OD1 ASP A 33 CD CD A 201 1555 2545 2.63 LINK OD2 ASP A 33 CD CD A 201 1555 2545 2.33 LINK OD2 ASP A 40 CD CD A 201 1555 1555 2.29 LINK OE1 GLU A 43 CD CD A 205 1555 1555 2.60 LINK OE2 GLU A 43 CD CD A 205 1555 1555 2.59 LINK O GLU A 92 CD CD A 204 1555 1555 2.54 LINK OE1 GLU A 97 CD CD A 204 1555 1555 2.63 LINK CD CD A 201 O HOH A 318 1555 1555 2.46 LINK CD CD A 202 O BHOH A 364 1555 1555 2.17 LINK CD CD A 202 O HOH A 367 1555 1555 2.31 LINK CD CD A 203 O HOH A 348 1555 1555 2.53 LINK CD CD A 204 O BHOH A 338 1555 1555 2.44 LINK CD CD A 205 O HOH A 303 1555 2555 2.64 LINK CD CD A 205 O BHOH A 339 1555 1555 2.35 CRYST1 31.365 37.075 41.014 90.00 93.19 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031883 0.000000 0.001777 0.00000 SCALE2 0.000000 0.026972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024420 0.00000 CONECT 56 751 CONECT 119 750 CONECT 120 750 CONECT 198 246 CONECT 246 198 CONECT 268 749 CONECT 288 753 CONECT 289 753 CONECT 390 407 CONECT 407 390 CONECT 666 752 CONECT 714 752 CONECT 749 268 774 CONECT 750 119 120 825 829 CONECT 751 56 807 CONECT 752 666 714 794 CONECT 753 288 289 796 CONECT 774 749 CONECT 794 752 CONECT 796 753 CONECT 807 751 CONECT 825 750 CONECT 829 750 MASTER 286 0 7 6 2 0 0 6 823 1 23 9 END