data_9J23 # _entry.id 9J23 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9J23 pdb_00009j23 10.2210/pdb9j23/pdb WWPDB D_1300050187 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9J23 _pdbx_database_status.recvd_initial_deposition_date 2024-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email fanxiaoju@trautec.com.cn _pdbx_contact_author.name_first Xiaoju _pdbx_contact_author.name_last Fan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7662-6945 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fan, X.' 1 ? 'Zhai, Y.' 2 ? 'Chu, Y.' 3 ? 'Fu, S.' 4 ? 'Li, D.' 5 ? 'Feng, P.' 6 ? 'Cao, K.' 7 ? 'Li, J.' 8 ? 'Si, Y.' 9 ? 'Ma, L.' 10 ? 'Qian, S.' 11 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of a triple-helix region of human Collagen type II from Trautec' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fan, X.' 1 ? primary 'Zhai, Y.' 2 ? primary 'Chu, Y.' 3 ? primary 'Fu, S.' 4 ? primary 'Li, D.' 5 ? primary 'Feng, P.' 6 ? primary 'Cao, K.' 7 ? primary 'Li, J.' 8 ? primary 'Si, Y.' 9 ? primary 'Ma, L.' 10 ? primary 'Qian, S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Triple-helix region of human collagen type II' 2799.020 3 ? ? ? ? 2 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'P(HYP)GP(HYP)GP(HYP)GARGIQGPQGPRGP(HYP)GP(HYP)GP(HYP)G' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGARGIQGPQGPRGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 HYP n 1 3 GLY n 1 4 PRO n 1 5 HYP n 1 6 GLY n 1 7 PRO n 1 8 HYP n 1 9 GLY n 1 10 ALA n 1 11 ARG n 1 12 GLY n 1 13 ILE n 1 14 GLN n 1 15 GLY n 1 16 PRO n 1 17 GLN n 1 18 GLY n 1 19 PRO n 1 20 ARG n 1 21 GLY n 1 22 PRO n 1 23 HYP n 1 24 GLY n 1 25 PRO n 1 26 HYP n 1 27 GLY n 1 28 PRO n 1 29 HYP n 1 30 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 30 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 ? ? ? A . n A 1 2 HYP 2 2 2 HYP HYP A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 HYP 5 5 5 HYP HYP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 HYP 8 8 8 HYP HYP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 HYP 23 23 23 HYP HYP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 HYP 26 26 26 HYP HYP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 HYP 29 29 29 HYP HYP A . n A 1 30 GLY 30 30 30 GLY GLY A . n B 1 1 PRO 1 1 ? ? ? B . n B 1 2 HYP 2 2 2 HYP HYP B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 HYP 5 5 5 HYP HYP B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 HYP 8 8 8 HYP HYP B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 GLN 14 14 14 GLN GLN B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 HYP 23 23 23 HYP HYP B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 HYP 26 26 26 HYP HYP B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 PRO 28 28 28 PRO PRO B . n B 1 29 HYP 29 29 29 HYP HYP B . n B 1 30 GLY 30 30 ? ? ? B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 HYP 2 2 2 HYP HYP C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 HYP 5 5 5 HYP HYP C . n C 1 6 GLY 6 6 6 GLY GLY C . n C 1 7 PRO 7 7 7 PRO PRO C . n C 1 8 HYP 8 8 8 HYP HYP C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 ARG 11 11 11 ARG ARG C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 ILE 13 13 13 ILE ILE C . n C 1 14 GLN 14 14 14 GLN GLN C . n C 1 15 GLY 15 15 15 GLY GLY C . n C 1 16 PRO 16 16 16 PRO PRO C . n C 1 17 GLN 17 17 17 GLN GLN C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 PRO 19 19 19 PRO PRO C . n C 1 20 ARG 20 20 20 ARG ARG C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 HYP 23 23 23 HYP HYP C . n C 1 24 GLY 24 24 24 GLY GLY C . n C 1 25 PRO 25 25 25 PRO PRO C . n C 1 26 HYP 26 26 26 HYP HYP C . n C 1 27 GLY 27 27 27 GLY GLY C . n C 1 28 PRO 28 28 ? ? ? C . n C 1 29 HYP 29 29 ? ? ? C . n C 1 30 GLY 30 30 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 38 HOH HOH A . D 2 HOH 2 102 68 HOH HOH A . D 2 HOH 3 103 35 HOH HOH A . D 2 HOH 4 104 7 HOH HOH A . D 2 HOH 5 105 77 HOH HOH A . D 2 HOH 6 106 16 HOH HOH A . D 2 HOH 7 107 50 HOH HOH A . D 2 HOH 8 108 67 HOH HOH A . D 2 HOH 9 109 82 HOH HOH A . D 2 HOH 10 110 26 HOH HOH A . D 2 HOH 11 111 23 HOH HOH A . D 2 HOH 12 112 20 HOH HOH A . D 2 HOH 13 113 65 HOH HOH A . D 2 HOH 14 114 21 HOH HOH A . D 2 HOH 15 115 34 HOH HOH A . D 2 HOH 16 116 15 HOH HOH A . D 2 HOH 17 117 37 HOH HOH A . D 2 HOH 18 118 64 HOH HOH A . D 2 HOH 19 119 19 HOH HOH A . D 2 HOH 20 120 11 HOH HOH A . D 2 HOH 21 121 63 HOH HOH A . D 2 HOH 22 122 74 HOH HOH A . D 2 HOH 23 123 60 HOH HOH A . D 2 HOH 24 124 22 HOH HOH A . D 2 HOH 25 125 39 HOH HOH A . D 2 HOH 26 126 78 HOH HOH A . D 2 HOH 27 127 48 HOH HOH A . D 2 HOH 28 128 75 HOH HOH A . D 2 HOH 29 129 59 HOH HOH A . D 2 HOH 30 130 66 HOH HOH A . E 2 HOH 1 101 44 HOH HOH B . E 2 HOH 2 102 84 HOH HOH B . E 2 HOH 3 103 80 HOH HOH B . E 2 HOH 4 104 70 HOH HOH B . E 2 HOH 5 105 18 HOH HOH B . E 2 HOH 6 106 46 HOH HOH B . E 2 HOH 7 107 5 HOH HOH B . E 2 HOH 8 108 32 HOH HOH B . E 2 HOH 9 109 71 HOH HOH B . E 2 HOH 10 110 2 HOH HOH B . E 2 HOH 11 111 13 HOH HOH B . E 2 HOH 12 112 62 HOH HOH B . E 2 HOH 13 113 8 HOH HOH B . E 2 HOH 14 114 47 HOH HOH B . E 2 HOH 15 115 10 HOH HOH B . E 2 HOH 16 116 52 HOH HOH B . E 2 HOH 17 117 49 HOH HOH B . E 2 HOH 18 118 6 HOH HOH B . E 2 HOH 19 119 58 HOH HOH B . E 2 HOH 20 120 29 HOH HOH B . E 2 HOH 21 121 69 HOH HOH B . E 2 HOH 22 122 51 HOH HOH B . E 2 HOH 23 123 36 HOH HOH B . F 2 HOH 1 101 54 HOH HOH C . F 2 HOH 2 102 81 HOH HOH C . F 2 HOH 3 103 12 HOH HOH C . F 2 HOH 4 104 27 HOH HOH C . F 2 HOH 5 105 45 HOH HOH C . F 2 HOH 6 106 79 HOH HOH C . F 2 HOH 7 107 14 HOH HOH C . F 2 HOH 8 108 3 HOH HOH C . F 2 HOH 9 109 72 HOH HOH C . F 2 HOH 10 110 30 HOH HOH C . F 2 HOH 11 111 31 HOH HOH C . F 2 HOH 12 112 9 HOH HOH C . F 2 HOH 13 113 25 HOH HOH C . F 2 HOH 14 114 24 HOH HOH C . F 2 HOH 15 115 41 HOH HOH C . F 2 HOH 16 116 53 HOH HOH C . F 2 HOH 17 117 40 HOH HOH C . F 2 HOH 18 118 4 HOH HOH C . F 2 HOH 19 119 85 HOH HOH C . F 2 HOH 20 120 57 HOH HOH C . F 2 HOH 21 121 76 HOH HOH C . F 2 HOH 22 122 43 HOH HOH C . F 2 HOH 23 123 17 HOH HOH C . F 2 HOH 24 124 1 HOH HOH C . F 2 HOH 25 125 42 HOH HOH C . F 2 HOH 26 126 73 HOH HOH C . F 2 HOH 27 127 83 HOH HOH C . F 2 HOH 28 128 33 HOH HOH C . F 2 HOH 29 129 28 HOH HOH C . F 2 HOH 30 130 56 HOH HOH C . F 2 HOH 31 131 55 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0430 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 99.984 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9J23 _cell.details ? _cell.formula_units_Z ? _cell.length_a 34.987 _cell.length_a_esd ? _cell.length_b 20.042 _cell.length_b_esd ? _cell.length_c 44.985 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9J23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9J23 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 33.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Index-G12:0.2M MgCl2, 0.1M HEPES pH7.5, 25% PEG3,350' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-07-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99999 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL45XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9J23 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 44.30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6457 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.908 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.78 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 346 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.812 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.743 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.446 _refine.aniso_B[2][2] 1.249 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -2.023 _refine.B_iso_max ? _refine.B_iso_mean 15.135 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9J23 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 44.30 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6450 _refine.ls_number_reflns_R_free 299 _refine.ls_number_reflns_R_work 6151 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.737 _refine.ls_percent_reflns_R_free 4.636 _refine.ls_R_factor_all 0.243 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2879 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2407 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1K6F _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.180 _refine.pdbx_overall_ESU_R_Free 0.165 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.293 _refine.overall_SU_ML 0.165 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 44.30 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 638 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 554 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.012 589 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 513 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.489 1.807 828 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.432 1.677 1245 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.711 5.000 81 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 6.887 5.000 6 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 9.992 10.000 36 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.645 10.000 12 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.061 0.200 76 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 704 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 88 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.183 0.200 200 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.172 0.200 461 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.164 0.200 314 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.089 0.200 233 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.195 0.200 31 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.114 0.200 3 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.149 0.200 24 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.181 0.200 16 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.314 1.532 333 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.312 1.529 332 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.172 2.725 411 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.169 2.727 412 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.646 1.832 256 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.643 1.834 257 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.615 3.227 417 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.612 3.228 418 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.287 20.465 693 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.133 16.965 671 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.750 1.795 . . 19 445 99.7849 . . . . 0.280 . . . . . . . . . . . 0.343 'X-RAY DIFFRACTION' 1.795 1.845 . . 23 436 99.3506 . . . . 0.288 . . . . . . . . . . . 0.333 'X-RAY DIFFRACTION' 1.845 1.898 . . 14 418 100.0000 . . . . 0.251 . . . . . . . . . . . 0.341 'X-RAY DIFFRACTION' 1.898 1.956 . . 29 417 99.5536 . . . . 0.248 . . . . . . . . . . . 0.309 'X-RAY DIFFRACTION' 1.956 2.020 . . 14 408 100.0000 . . . . 0.246 . . . . . . . . . . . 0.323 'X-RAY DIFFRACTION' 2.020 2.091 . . 18 376 99.7468 . . . . 0.240 . . . . . . . . . . . 0.338 'X-RAY DIFFRACTION' 2.091 2.170 . . 19 378 100.0000 . . . . 0.239 . . . . . . . . . . . 0.408 'X-RAY DIFFRACTION' 2.170 2.258 . . 14 371 99.4832 . . . . 0.226 . . . . . . . . . . . 0.244 'X-RAY DIFFRACTION' 2.258 2.358 . . 17 346 100.0000 . . . . 0.240 . . . . . . . . . . . 0.242 'X-RAY DIFFRACTION' 2.358 2.473 . . 18 326 99.4220 . . . . 0.256 . . . . . . . . . . . 0.332 'X-RAY DIFFRACTION' 2.473 2.606 . . 17 313 100.0000 . . . . 0.274 . . . . . . . . . . . 0.316 'X-RAY DIFFRACTION' 2.606 2.764 . . 16 291 99.6753 . . . . 0.223 . . . . . . . . . . . 0.407 'X-RAY DIFFRACTION' 2.764 2.954 . . 14 294 99.6764 . . . . 0.207 . . . . . . . . . . . 0.370 'X-RAY DIFFRACTION' 2.954 3.189 . . 17 264 100.0000 . . . . 0.218 . . . . . . . . . . . 0.191 'X-RAY DIFFRACTION' 3.189 3.492 . . 16 244 99.6169 . . . . 0.224 . . . . . . . . . . . 0.228 'X-RAY DIFFRACTION' 3.492 3.901 . . 11 219 99.5671 . . . . 0.192 . . . . . . . . . . . 0.180 'X-RAY DIFFRACTION' 3.901 4.499 . . 10 204 100.0000 . . . . 0.211 . . . . . . . . . . . 0.225 'X-RAY DIFFRACTION' 4.499 5.496 . . 3 174 100.0000 . . . . 0.267 . . . . . . . . . . . 0.382 'X-RAY DIFFRACTION' 5.496 7.713 . . 8 138 99.3197 . . . . 0.284 . . . . . . . . . . . 0.288 'X-RAY DIFFRACTION' 7.713 44.30 . . 2 89 98.9130 . . . . 0.448 . . . . . . . . . . . 0.085 # _struct.entry_id 9J23 _struct.title 'Structure of a triple-helix region of human Collagen type II from Trautec' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9J23 _struct_keywords.text 'Human collagen II, Triple-helix, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9J23 _struct_ref.pdbx_db_accession 9J23 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9J23 A 1 ? 30 ? 9J23 1 ? 30 ? 1 30 2 1 9J23 B 1 ? 30 ? 9J23 1 ? 30 ? 1 30 3 1 9J23 C 1 ? 30 ? 9J23 1 ? 30 ? 1 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5410 ? 1 MORE -23 ? 1 'SSA (A^2)' 5000 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HYP 2 C ? ? ? 1_555 A GLY 3 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A PRO 4 C ? ? ? 1_555 A HYP 5 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale3 covale both ? A HYP 5 C ? ? ? 1_555 A GLY 6 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale4 covale both ? A PRO 7 C ? ? ? 1_555 A HYP 8 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale5 covale both ? A HYP 8 C ? ? ? 1_555 A GLY 9 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A PRO 22 C ? ? ? 1_555 A HYP 23 N ? ? A PRO 22 A HYP 23 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale7 covale both ? A HYP 23 C ? ? ? 1_555 A GLY 24 N ? ? A HYP 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A PRO 25 C ? ? ? 1_555 A HYP 26 N ? ? A PRO 25 A HYP 26 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale9 covale both ? A HYP 26 C ? ? ? 1_555 A GLY 27 N ? ? A HYP 26 A GLY 27 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? A PRO 28 C ? ? ? 1_555 A HYP 29 N ? ? A PRO 28 A HYP 29 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale11 covale both ? A HYP 29 C ? ? ? 1_555 A GLY 30 N ? ? A HYP 29 A GLY 30 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale12 covale both ? B HYP 2 C ? ? ? 1_555 B GLY 3 N ? ? B HYP 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale13 covale both ? B PRO 4 C ? ? ? 1_555 B HYP 5 N ? ? B PRO 4 B HYP 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale14 covale both ? B HYP 5 C ? ? ? 1_555 B GLY 6 N ? ? B HYP 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale15 covale both ? B PRO 7 C ? ? ? 1_555 B HYP 8 N ? ? B PRO 7 B HYP 8 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale16 covale both ? B HYP 8 C ? ? ? 1_555 B GLY 9 N ? ? B HYP 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale17 covale both ? B PRO 22 C ? ? ? 1_555 B HYP 23 N ? ? B PRO 22 B HYP 23 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale18 covale both ? B HYP 23 C ? ? ? 1_555 B GLY 24 N ? ? B HYP 23 B GLY 24 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale19 covale both ? B PRO 25 C ? ? ? 1_555 B HYP 26 N ? ? B PRO 25 B HYP 26 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale20 covale both ? B HYP 26 C ? ? ? 1_555 B GLY 27 N ? ? B HYP 26 B GLY 27 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale21 covale both ? B PRO 28 C ? ? ? 1_555 B HYP 29 N ? ? B PRO 28 B HYP 29 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale22 covale both ? C PRO 1 C ? ? ? 1_555 C HYP 2 N ? ? C PRO 1 C HYP 2 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale23 covale both ? C HYP 2 C ? ? ? 1_555 C GLY 3 N ? ? C HYP 2 C GLY 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? C PRO 4 C ? ? ? 1_555 C HYP 5 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale25 covale both ? C HYP 5 C ? ? ? 1_555 C GLY 6 N ? ? C HYP 5 C GLY 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale26 covale both ? C PRO 7 C ? ? ? 1_555 C HYP 8 N ? ? C PRO 7 C HYP 8 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale27 covale both ? C HYP 8 C ? ? ? 1_555 C GLY 9 N ? ? C HYP 8 C GLY 9 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale28 covale both ? C PRO 22 C ? ? ? 1_555 C HYP 23 N ? ? C PRO 22 C HYP 23 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale29 covale both ? C HYP 23 C ? ? ? 1_555 C GLY 24 N ? ? C HYP 23 C GLY 24 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale30 covale both ? C PRO 25 C ? ? ? 1_555 C HYP 26 N ? ? C PRO 25 C HYP 26 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale31 covale both ? C HYP 26 C ? ? ? 1_555 C GLY 27 N ? ? C HYP 26 C GLY 27 1_555 ? ? ? ? ? ? ? 1.345 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9J23 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 1 ? A PRO 1 2 1 Y 1 B PRO 1 ? B PRO 1 3 1 Y 1 B GLY 30 ? B GLY 30 4 1 Y 1 C PRO 28 ? C PRO 28 5 1 Y 1 C HYP 29 ? C HYP 29 6 1 Y 1 C GLY 30 ? C GLY 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 GLN N N N N 41 GLN CA C N S 42 GLN C C N N 43 GLN O O N N 44 GLN CB C N N 45 GLN CG C N N 46 GLN CD C N N 47 GLN OE1 O N N 48 GLN NE2 N N N 49 GLN OXT O N N 50 GLN H H N N 51 GLN H2 H N N 52 GLN HA H N N 53 GLN HB2 H N N 54 GLN HB3 H N N 55 GLN HG2 H N N 56 GLN HG3 H N N 57 GLN HE21 H N N 58 GLN HE22 H N N 59 GLN HXT H N N 60 GLY N N N N 61 GLY CA C N N 62 GLY C C N N 63 GLY O O N N 64 GLY OXT O N N 65 GLY H H N N 66 GLY H2 H N N 67 GLY HA2 H N N 68 GLY HA3 H N N 69 GLY HXT H N N 70 HOH O O N N 71 HOH H1 H N N 72 HOH H2 H N N 73 HYP N N N N 74 HYP CA C N S 75 HYP C C N N 76 HYP O O N N 77 HYP CB C N N 78 HYP CG C N R 79 HYP CD C N N 80 HYP OD1 O N N 81 HYP OXT O N N 82 HYP H H N N 83 HYP HA H N N 84 HYP HB2 H N N 85 HYP HB3 H N N 86 HYP HG H N N 87 HYP HD22 H N N 88 HYP HD23 H N N 89 HYP HD1 H N N 90 HYP HXT H N N 91 ILE N N N N 92 ILE CA C N S 93 ILE C C N N 94 ILE O O N N 95 ILE CB C N S 96 ILE CG1 C N N 97 ILE CG2 C N N 98 ILE CD1 C N N 99 ILE OXT O N N 100 ILE H H N N 101 ILE H2 H N N 102 ILE HA H N N 103 ILE HB H N N 104 ILE HG12 H N N 105 ILE HG13 H N N 106 ILE HG21 H N N 107 ILE HG22 H N N 108 ILE HG23 H N N 109 ILE HD11 H N N 110 ILE HD12 H N N 111 ILE HD13 H N N 112 ILE HXT H N N 113 PRO N N N N 114 PRO CA C N S 115 PRO C C N N 116 PRO O O N N 117 PRO CB C N N 118 PRO CG C N N 119 PRO CD C N N 120 PRO OXT O N N 121 PRO H H N N 122 PRO HA H N N 123 PRO HB2 H N N 124 PRO HB3 H N N 125 PRO HG2 H N N 126 PRO HG3 H N N 127 PRO HD2 H N N 128 PRO HD3 H N N 129 PRO HXT H N N 130 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 GLN N CA sing N N 39 GLN N H sing N N 40 GLN N H2 sing N N 41 GLN CA C sing N N 42 GLN CA CB sing N N 43 GLN CA HA sing N N 44 GLN C O doub N N 45 GLN C OXT sing N N 46 GLN CB CG sing N N 47 GLN CB HB2 sing N N 48 GLN CB HB3 sing N N 49 GLN CG CD sing N N 50 GLN CG HG2 sing N N 51 GLN CG HG3 sing N N 52 GLN CD OE1 doub N N 53 GLN CD NE2 sing N N 54 GLN NE2 HE21 sing N N 55 GLN NE2 HE22 sing N N 56 GLN OXT HXT sing N N 57 GLY N CA sing N N 58 GLY N H sing N N 59 GLY N H2 sing N N 60 GLY CA C sing N N 61 GLY CA HA2 sing N N 62 GLY CA HA3 sing N N 63 GLY C O doub N N 64 GLY C OXT sing N N 65 GLY OXT HXT sing N N 66 HOH O H1 sing N N 67 HOH O H2 sing N N 68 HYP N CA sing N N 69 HYP N CD sing N N 70 HYP N H sing N N 71 HYP CA C sing N N 72 HYP CA CB sing N N 73 HYP CA HA sing N N 74 HYP C O doub N N 75 HYP C OXT sing N N 76 HYP CB CG sing N N 77 HYP CB HB2 sing N N 78 HYP CB HB3 sing N N 79 HYP CG CD sing N N 80 HYP CG OD1 sing N N 81 HYP CG HG sing N N 82 HYP CD HD22 sing N N 83 HYP CD HD23 sing N N 84 HYP OD1 HD1 sing N N 85 HYP OXT HXT sing N N 86 ILE N CA sing N N 87 ILE N H sing N N 88 ILE N H2 sing N N 89 ILE CA C sing N N 90 ILE CA CB sing N N 91 ILE CA HA sing N N 92 ILE C O doub N N 93 ILE C OXT sing N N 94 ILE CB CG1 sing N N 95 ILE CB CG2 sing N N 96 ILE CB HB sing N N 97 ILE CG1 CD1 sing N N 98 ILE CG1 HG12 sing N N 99 ILE CG1 HG13 sing N N 100 ILE CG2 HG21 sing N N 101 ILE CG2 HG22 sing N N 102 ILE CG2 HG23 sing N N 103 ILE CD1 HD11 sing N N 104 ILE CD1 HD12 sing N N 105 ILE CD1 HD13 sing N N 106 ILE OXT HXT sing N N 107 PRO N CA sing N N 108 PRO N CD sing N N 109 PRO N H sing N N 110 PRO CA C sing N N 111 PRO CA CB sing N N 112 PRO CA HA sing N N 113 PRO C O doub N N 114 PRO C OXT sing N N 115 PRO CB CG sing N N 116 PRO CB HB2 sing N N 117 PRO CB HB3 sing N N 118 PRO CG CD sing N N 119 PRO CG HG2 sing N N 120 PRO CG HG3 sing N N 121 PRO CD HD2 sing N N 122 PRO CD HD3 sing N N 123 PRO OXT HXT sing N N 124 # _pdbx_audit_support.funding_organization 'Jiangsu Trautec Medical Technology Co.,Ltd' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number CQ20230004/CE20235002/CQ20230005 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HYP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HYP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1K6F _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9J23 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.028582 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005032 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.049895 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022571 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 # loop_