HEADER ANTIVIRAL PROTEIN 09-AUG-24 9J4P TITLE REGULATORY DOMAIN AND KINASE DOMAIN OF ALPK1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-PROTEIN KINASE 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: CHROMOSOME 4 KINASE,LYMPHOCYTE ALPHA-PROTEIN KINASE; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALPHA-PROTEIN KINASE 1; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: KINASE DOMAIN; COMPND 11 EC: 2.7.11.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: ALPK1, KIAA1527, LAK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 GENE: ALPK1, KIAA1527; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, KINASE, IMMUNITY, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.XU,T.XU REVDAT 1 30-JUL-25 9J4P 0 JRNL AUTH C.XU,T.XU JRNL TITL REGULATORY DOMAIN AND KINASE DOMAIN OF ALPK1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 35389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0100 - 5.2900 0.99 3203 206 0.1820 0.2119 REMARK 3 2 5.2800 - 4.2000 1.00 3114 180 0.1625 0.1876 REMARK 3 3 4.2000 - 3.6700 0.99 3072 171 0.1765 0.2197 REMARK 3 4 3.6700 - 3.3300 1.00 3052 166 0.1980 0.2422 REMARK 3 5 3.3300 - 3.0900 1.00 3088 157 0.2280 0.2476 REMARK 3 6 3.0900 - 2.9100 1.00 3059 136 0.2403 0.2845 REMARK 3 7 2.9100 - 2.7600 0.98 2969 167 0.2516 0.2466 REMARK 3 8 2.7600 - 2.6400 0.90 2727 150 0.2525 0.2848 REMARK 3 9 2.6400 - 2.5400 0.80 2450 117 0.2486 0.2654 REMARK 3 10 2.5400 - 2.4500 0.71 2149 88 0.2507 0.3003 REMARK 3 11 2.4500 - 2.3800 0.63 1922 95 0.2515 0.2905 REMARK 3 12 2.3800 - 2.3100 0.54 1633 87 0.2456 0.3002 REMARK 3 13 2.3100 - 2.2500 0.39 1172 59 0.2910 0.2868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5579 REMARK 3 ANGLE : 0.983 7551 REMARK 3 CHIRALITY : 0.053 862 REMARK 3 PLANARITY : 0.008 954 REMARK 3 DIHEDRAL : 18.703 2068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9630 43.1473 52.9150 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.3593 REMARK 3 T33: 0.1805 T12: 0.0756 REMARK 3 T13: 0.0065 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.6949 L22: 1.3674 REMARK 3 L33: 0.5617 L12: 0.2984 REMARK 3 L13: -0.2628 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.2799 S13: 0.0650 REMARK 3 S21: 0.1965 S22: 0.0195 S23: -0.0825 REMARK 3 S31: -0.0660 S32: 0.1140 S33: 0.2912 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 394 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4546 28.2832 61.5574 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.4918 REMARK 3 T33: -0.6654 T12: 0.1783 REMARK 3 T13: -0.2098 T23: 0.4127 REMARK 3 L TENSOR REMARK 3 L11: 0.5840 L22: 0.1626 REMARK 3 L33: 1.1697 L12: 0.0176 REMARK 3 L13: -0.0244 L23: 0.5530 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: -0.7169 S13: -0.3277 REMARK 3 S21: 0.0858 S22: 0.1699 S23: -1.1137 REMARK 3 S31: -0.2658 S32: 0.0818 S33: -0.5344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1472 23.2246 32.7201 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.3857 REMARK 3 T33: 0.3328 T12: 0.0126 REMARK 3 T13: 0.0284 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.2889 L22: 0.3604 REMARK 3 L33: 0.2202 L12: 0.2208 REMARK 3 L13: 0.0812 L23: -0.2551 REMARK 3 S TENSOR REMARK 3 S11: -0.1392 S12: 0.0508 S13: -0.3505 REMARK 3 S21: 0.0043 S22: 0.0747 S23: 0.1806 REMARK 3 S31: -0.0019 S32: -0.1978 S33: 0.6558 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0857 36.5520 40.6748 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.3647 REMARK 3 T33: 0.3399 T12: 0.0863 REMARK 3 T13: 0.0102 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.4710 L22: 0.5445 REMARK 3 L33: 0.4364 L12: -0.1667 REMARK 3 L13: -0.1691 L23: -0.0987 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: 0.0238 S13: 0.1729 REMARK 3 S21: -0.0131 S22: 0.0614 S23: 0.0029 REMARK 3 S31: -0.3471 S32: -0.0972 S33: 0.0788 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5307 40.8502 30.5459 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.3465 REMARK 3 T33: 0.3007 T12: -0.0057 REMARK 3 T13: -0.0045 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.7882 L22: 0.5656 REMARK 3 L33: 0.8024 L12: -0.0447 REMARK 3 L13: -0.2915 L23: -0.4336 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0353 S13: -0.1078 REMARK 3 S21: -0.0200 S22: 0.0610 S23: 0.0690 REMARK 3 S31: 0.1556 S32: -0.0274 S33: -0.8566 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3027 49.3504 36.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.3903 T22: 0.2775 REMARK 3 T33: 0.5302 T12: -0.0113 REMARK 3 T13: -0.0641 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1334 L22: 0.2075 REMARK 3 L33: 0.3150 L12: -0.0243 REMARK 3 L13: 0.0895 L23: -0.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.1270 S13: 0.3855 REMARK 3 S21: -0.0250 S22: -0.1384 S23: -0.0570 REMARK 3 S31: -0.3068 S32: 0.0323 S33: 0.0445 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7219 51.3130 18.9834 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.7435 REMARK 3 T33: 0.6164 T12: -0.0912 REMARK 3 T13: -0.0780 T23: 0.3105 REMARK 3 L TENSOR REMARK 3 L11: 1.0934 L22: 1.0461 REMARK 3 L33: 0.5359 L12: -0.0775 REMARK 3 L13: -0.0276 L23: -0.4263 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.3110 S13: 0.3152 REMARK 3 S21: -0.1775 S22: 0.1152 S23: 0.3174 REMARK 3 S31: -0.0932 S32: -0.0984 S33: -0.0947 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9J4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 14-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.7 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER 1.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350 AND 0.1 M CBTP, PH 8.2, REMARK 280 0.1% SEED, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.84667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.42333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.42333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.84667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP B 66 REMARK 465 GLN B 67 REMARK 465 TYR B 68 REMARK 465 LYS B 69 REMARK 465 GLN B 70 REMARK 465 ALA B 71 REMARK 465 VAL B 72 REMARK 465 GLY B 73 REMARK 465 PRO B 74 REMARK 465 GLU B 75 REMARK 465 ASP B 76 REMARK 465 LYS B 77 REMARK 465 THR B 78 REMARK 465 ASN B 79 REMARK 465 LEU B 80 REMARK 465 ASN B 175 REMARK 465 GLY B 176 REMARK 465 ALA B 177 REMARK 465 THR B 178 REMARK 465 VAL A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 GLY A 83 REMARK 465 LYS A 84 REMARK 465 GLN A 85 REMARK 465 ARG A 86 REMARK 465 GLY A 175 REMARK 465 GLU A 176 REMARK 465 PHE A 177 REMARK 465 VAL A 178 REMARK 465 LYS A 179 REMARK 465 LEU A 180 REMARK 465 SER A 181 REMARK 465 ASN A 182 REMARK 465 ASN A 183 REMARK 465 THR A 184 REMARK 465 LYS A 185 REMARK 465 VAL A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 388 CG CD CE NZ REMARK 470 SER B 410 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 116 O21 DY0 B 501 1.30 REMARK 500 O LEU A 231 O HOH A 401 1.95 REMARK 500 O HOH A 484 O HOH A 488 2.02 REMARK 500 O HOH B 712 O HOH B 714 2.03 REMARK 500 OE2 GLU B 165 OH TYR A 139 2.03 REMARK 500 O HOH B 620 O HOH B 709 2.04 REMARK 500 O HOH B 675 O HOH B 710 2.05 REMARK 500 O HOH B 627 O HOH B 718 2.07 REMARK 500 ND2 ASN B 264 O HOH B 601 2.08 REMARK 500 OE1 GLU A 122 O HOH A 402 2.10 REMARK 500 OE1 GLN B 12 O HOH B 602 2.10 REMARK 500 O HOH B 704 O HOH A 455 2.11 REMARK 500 O HIS A 261 NH2 ARG A 275 2.15 REMARK 500 ND2 ASN A 44 O HOH A 403 2.16 REMARK 500 N MET B 1 O HOH B 603 2.17 REMARK 500 O ALA B 25 N ASP B 27 2.17 REMARK 500 OD2 ASP A 18 NH1 ARG A 34 2.17 REMARK 500 O HOH B 702 O HOH B 718 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 268 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 22 -71.06 -100.61 REMARK 500 GLU B 24 -136.61 36.13 REMARK 500 PRO B 26 67.84 -39.50 REMARK 500 VAL B 28 -142.74 -66.64 REMARK 500 SER B 45 87.76 -50.15 REMARK 500 GLU B 46 -62.81 166.58 REMARK 500 ILE B 143 107.66 60.43 REMARK 500 SER B 173 -87.48 -117.62 REMARK 500 ASN B 185 151.41 168.69 REMARK 500 ASP B 341 -78.56 -37.36 REMARK 500 LEU B 441 -80.31 63.00 REMARK 500 ASN A 37 46.80 -96.46 REMARK 500 GLU A 159 -71.50 -87.28 REMARK 500 ASP A 160 -81.65 -115.71 REMARK 500 ASN A 189 -154.76 66.99 REMARK 500 GLU A 190 -74.40 57.24 REMARK 500 ASN A 224 -167.19 -161.01 REMARK 500 LYS A 226 -155.19 -166.91 REMARK 500 LYS A 242 143.95 -29.97 REMARK 500 ASP A 243 -164.67 73.48 REMARK 500 ASN A 259 -35.04 -133.05 REMARK 500 HIS A 261 59.37 -116.12 REMARK 500 SER A 263 -76.30 -97.13 REMARK 500 CYS A 264 142.43 126.90 REMARK 500 PRO A 276 -92.14 -85.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 ND1 REMARK 620 2 HIS A 261 NE2 111.2 REMARK 620 3 CYS A 264 SG 120.4 124.4 REMARK 620 4 CYS A 268 SG 101.3 78.2 108.6 REMARK 620 N 1 2 3 DBREF 9J4P B 1 446 UNP Q96QP1 ALPK1_HUMAN 1 446 DBREF 9J4P A 3 277 UNP Q9CXB8 ALPK1_MOUSE 950 1224 SEQRES 1 B 446 MET ASN ASN GLN LYS VAL VAL ALA VAL LEU LEU GLN GLU SEQRES 2 B 446 CYS LYS GLN VAL LEU ASP GLN LEU LEU LEU GLU ALA PRO SEQRES 3 B 446 ASP VAL SER GLU GLU ASP LYS SER GLU ASP GLN ARG CYS SEQRES 4 B 446 ARG ALA LEU LEU PRO SER GLU LEU ARG THR LEU ILE GLN SEQRES 5 B 446 GLU ALA LYS GLU MET LYS TRP PRO PHE VAL PRO GLU LYS SEQRES 6 B 446 TRP GLN TYR LYS GLN ALA VAL GLY PRO GLU ASP LYS THR SEQRES 7 B 446 ASN LEU LYS ASP VAL ILE GLY ALA GLY LEU GLN GLN LEU SEQRES 8 B 446 LEU ALA SER LEU ARG ALA SER ILE LEU ALA ARG ASP CYS SEQRES 9 B 446 ALA ALA ALA ALA ALA ILE VAL PHE LEU VAL ASP ARG PHE SEQRES 10 B 446 LEU TYR GLY LEU ASP VAL SER GLY LYS LEU LEU GLN VAL SEQRES 11 B 446 ALA LYS GLY LEU HIS LYS LEU GLN PRO ALA THR PRO ILE SEQRES 12 B 446 ALA PRO GLN VAL VAL ILE ARG GLN ALA ARG ILE SER VAL SEQRES 13 B 446 ASN SER GLY LYS LEU LEU LYS ALA GLU TYR ILE LEU SER SEQRES 14 B 446 SER LEU ILE SER ASN ASN GLY ALA THR GLY THR TRP LEU SEQRES 15 B 446 TYR ARG ASN GLU SER ASP LYS VAL LEU VAL GLN SER VAL SEQRES 16 B 446 CYS ILE GLN ILE ARG GLY GLN ILE LEU GLN LYS LEU GLY SEQRES 17 B 446 MET TRP TYR GLU ALA ALA GLU LEU ILE TRP ALA SER ILE SEQRES 18 B 446 VAL GLY TYR LEU ALA LEU PRO GLN PRO ASP LYS LYS GLY SEQRES 19 B 446 LEU SER THR SER LEU GLY ILE LEU ALA ASP ILE PHE VAL SEQRES 20 B 446 SER MET SER LYS ASN ASP TYR GLU LYS PHE LYS ASN ASN SEQRES 21 B 446 PRO GLN ILE ASN LEU SER LEU LEU LYS GLU PHE ASP HIS SEQRES 22 B 446 HIS LEU LEU SER ALA ALA GLU ALA CYS LYS LEU ALA ALA SEQRES 23 B 446 ALA PHE SER ALA TYR THR PRO LEU PHE VAL LEU THR ALA SEQRES 24 B 446 VAL ASN ILE ARG GLY THR CYS LEU LEU SER TYR SER SER SEQRES 25 B 446 SER ASN ASP CYS PRO PRO GLU LEU LYS ASN LEU HIS LEU SEQRES 26 B 446 CYS GLU ALA LYS GLU ALA PHE GLU ILE GLY LEU LEU THR SEQRES 27 B 446 LYS ARG ASP ASP GLU PRO VAL THR GLY LYS GLN GLU LEU SEQRES 28 B 446 HIS SER PHE VAL LYS ALA ALA PHE GLY LEU THR THR VAL SEQRES 29 B 446 HIS ARG ARG LEU HIS GLY GLU THR GLY THR VAL HIS ALA SEQRES 30 B 446 ALA SER GLN LEU CYS LYS GLU ALA MET GLY LYS LEU TYR SEQRES 31 B 446 ASN PHE SER THR SER SER ARG SER GLN ASP ARG GLU ALA SEQRES 32 B 446 LEU SER GLN GLU VAL MET SER VAL ILE ALA GLN VAL LYS SEQRES 33 B 446 GLU HIS LEU GLN VAL GLN SER PHE SER ASN VAL ASP ASP SEQRES 34 B 446 ARG SER TYR VAL PRO GLU SER PHE GLU CYS ARG LEU ASP SEQRES 35 B 446 LYS LEU ILE LEU SEQRES 1 A 275 GLN THR SER GLN GLU ILE LEU GLU ALA ARG THR LEU GLN SEQRES 2 A 275 PRO ASP ASP LEU GLU LYS LEU LEU ALA GLY VAL ARG HIS SEQRES 3 A 275 ASP TRP LEU LEU GLN ARG LEU GLU ASN THR GLY VAL LEU SEQRES 4 A 275 LYS SER ASN GLN LEU GLN GLN ALA HIS SER ALA LEU LEU SEQRES 5 A 275 LEU LYS TYR SER LYS LYS SER GLU LEU TRP THR ALA GLN SEQRES 6 A 275 GLU THR VAL VAL TYR LEU GLY ASP TYR LEU LYS VAL LYS SEQRES 7 A 275 LYS LYS GLY LYS GLN ARG ASN ALA PHE TRP VAL HIS TYR SEQRES 8 A 275 LEU HIS GLN GLU GLU THR LEU GLY ARG TYR VAL GLY LYS SEQRES 9 A 275 GLU TYR LYS GLU ARG LYS GLY LEU ARG HIS HIS PHE THR SEQRES 10 A 275 ASP VAL GLU ARG GLN MET THR ALA GLN HIS TYR VAL THR SEQRES 11 A 275 GLU PHE ASN LYS ARG LEU TYR GLU GLN LYS ILE PRO THR SEQRES 12 A 275 GLN ILE PHE TYR VAL PRO SER THR ILE LEU LEU ILE LEU SEQRES 13 A 275 GLU ASP ARG THR ILE LYS GLY CYS ILE SER VAL GLU PRO SEQRES 14 A 275 TYR ILE LEU GLY GLU PHE VAL LYS LEU SER ASN ASN THR SEQRES 15 A 275 LYS VAL VAL LYS ASN GLU TYR LYS ALA THR GLU TYR GLY SEQRES 16 A 275 LEU ALA TYR GLY HIS PHE SER TYR GLU PHE SER ASN HIS SEQRES 17 A 275 ARG ASP VAL VAL VAL ASP LEU GLN GLY TRP VAL THR GLY SEQRES 18 A 275 ASN GLY LYS GLY LEU ILE TYR LEU THR ASP PRO GLN ILE SEQRES 19 A 275 HIS SER VAL ASP GLN LYS ASP VAL THR THR ASN PHE GLY SEQRES 20 A 275 LYS ARG GLY ILE PHE TYR PHE PHE ASN ASN GLN HIS ALA SEQRES 21 A 275 SER CYS ASN GLU ILE CYS HIS ARG LEU SER LEU THR ARG SEQRES 22 A 275 PRO SER HET DY0 B 501 40 HET ZN A 301 1 HETNAM DY0 [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 DY0 BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 3 DY0 [(2S,3S,4S,5S,6R)-6-[(1R)-1,2-BIS(OXIDANYL)ETHYL]-3,4, HETNAM 4 DY0 5-TRIS(OXIDANYL)OXAN-2-YL] HYDROGEN PHOSPHATE HETNAM ZN ZINC ION FORMUL 3 DY0 C17 H27 N5 O16 P2 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *222(H2 O) HELIX 1 AA1 ASN B 2 GLU B 24 1 23 HELIX 2 AA2 SER B 29 LEU B 42 1 14 HELIX 3 AA3 GLU B 46 GLU B 56 1 11 HELIX 4 AA4 ASP B 82 GLY B 87 1 6 HELIX 5 AA5 GLY B 87 ALA B 101 1 15 HELIX 6 AA6 ASP B 103 GLY B 120 1 18 HELIX 7 AA7 VAL B 123 GLN B 138 1 16 HELIX 8 AA8 ALA B 144 SER B 158 1 15 HELIX 9 AA9 LYS B 160 SER B 173 1 14 HELIX 10 AB1 GLU B 186 LEU B 207 1 22 HELIX 11 AB2 MET B 209 LEU B 227 1 19 HELIX 12 AB3 ASP B 231 MET B 249 1 19 HELIX 13 AB4 SER B 250 ASN B 260 1 11 HELIX 14 AB5 LEU B 265 PHE B 271 1 7 HELIX 15 AB6 HIS B 273 PHE B 288 1 16 HELIX 16 AB7 THR B 292 SER B 312 1 21 HELIX 17 AB8 PRO B 317 GLU B 319 5 3 HELIX 18 AB9 LEU B 320 LEU B 337 1 18 HELIX 19 AC1 GLY B 347B GLY B 370 1 24 HELIX 20 AC2 THR B 372 THR B 394 1 23 HELIX 21 AC3 ARG B 397 GLN B 420 1 24 HELIX 22 AC4 PRO B 434 CYS B 439 5 6 HELIX 23 AC5 ARG B 440 LEU B 444 5 5 HELIX 24 AC6 THR A 4 ARG A 12 1 9 HELIX 25 AC7 GLN A 15 GLY A 25 1 11 HELIX 26 AC8 HIS A 28 LEU A 35 1 8 HELIX 27 AC9 GLY A 113 GLN A 141 1 29 HELIX 28 AD1 LYS A 192 SER A 208 1 17 HELIX 29 AD2 PHE A 248 GLN A 260 1 13 HELIX 30 AD3 ASN A 265 LEU A 271 1 7 SHEET 1 AA1 8 VAL A 26 ARG A 27 0 SHEET 2 AA1 8 LEU A 63 TYR A 76 -1 O TRP A 64 N VAL A 26 SHEET 3 AA1 8 ALA A 88 TYR A 93 -1 O TRP A 90 N GLY A 74 SHEET 4 AA1 8 TYR A 103 GLU A 107 -1 O GLY A 105 N PHE A 89 SHEET 5 AA1 8 ILE A 163 PRO A 171 -1 O GLU A 170 N VAL A 104 SHEET 6 AA1 8 THR A 153 LEU A 158 -1 N ILE A 157 O LYS A 164 SHEET 7 AA1 8 GLN A 48 SER A 58 -1 N LEU A 53 O LEU A 156 SHEET 8 AA1 8 LEU A 63 TYR A 76 -1 O GLN A 67 N LEU A 54 SHEET 1 AA2 2 GLN A 146 PHE A 148 0 SHEET 2 AA2 2 LEU A 228 TYR A 230 1 O ILE A 229 N PHE A 148 SHEET 1 AA3 2 ASP A 212 ASP A 216 0 SHEET 2 AA3 2 PRO A 234 SER A 238 -1 O GLN A 235 N VAL A 215 LINK ND1 HIS A 202 ZN ZN A 301 1555 1555 1.85 LINK NE2 HIS A 261 ZN ZN A 301 1555 1555 1.90 LINK SG CYS A 264 ZN ZN A 301 1555 1555 2.20 LINK SG CYS A 268 ZN ZN A 301 1555 1555 2.26 CRYST1 93.383 93.383 172.270 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010709 0.006183 0.000000 0.00000 SCALE2 0.000000 0.012365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005805 0.00000 CONECT 4823 5477 CONECT 5313 5477 CONECT 5330 5477 CONECT 5361 5477 CONECT 5437 5454 5455 CONECT 5438 5446 5447 5462 CONECT 5439 5440 5459 CONECT 5440 5439 5441 5460 CONECT 5441 5440 5442 5461 CONECT 5442 5441 5443 5472 CONECT 5443 5442 5444 5473 CONECT 5444 5443 5445 5474 CONECT 5445 5444 5461 5468 CONECT 5446 5438 5458 5470 CONECT 5447 5438 5449 5469 CONECT 5448 5450 5455 5458 CONECT 5449 5447 5451 5470 CONECT 5450 5448 5452 5457 CONECT 5451 5449 5471 CONECT 5452 5450 5454 5456 CONECT 5453 5457 5458 CONECT 5454 5437 5452 CONECT 5455 5437 5448 CONECT 5456 5452 CONECT 5457 5450 5453 CONECT 5458 5446 5448 5453 CONECT 5459 5439 CONECT 5460 5440 CONECT 5461 5441 5445 CONECT 5462 5438 CONECT 5463 5475 CONECT 5464 5476 CONECT 5465 5475 CONECT 5466 5476 CONECT 5467 5475 5476 CONECT 5468 5445 5476 CONECT 5469 5447 CONECT 5470 5446 5449 CONECT 5471 5451 5475 CONECT 5472 5442 CONECT 5473 5443 CONECT 5474 5444 CONECT 5475 5463 5465 5467 5471 CONECT 5476 5464 5466 5467 5468 CONECT 5477 4823 5313 5330 5361 MASTER 472 0 2 30 12 0 0 6 5697 2 45 57 END