data_9J5O # _entry.id 9J5O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9J5O pdb_00009j5o 10.2210/pdb9j5o/pdb WWPDB D_1300050198 ? ? EMDB EMD-61148 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-21 ? 2 'EM metadata' 1 0 2026-01-21 ? 3 FSC 1 0 2026-01-21 ? 4 'Half map' 1 0 2026-01-21 1 5 'Half map' 1 0 2026-01-21 2 6 Image 1 0 2026-01-21 ? 7 'Primary map' 1 0 2026-01-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9J5O _pdbx_database_status.recvd_initial_deposition_date 2024-08-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala' _pdbx_database_related.db_id EMD-61148 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email jwkim@gist.ac.kr _pdbx_contact_author.name_first Jungwook _pdbx_contact_author.name_last Kim _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5213-9299 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shin, K.' 1 0009-0009-4788-0539 'Kim, J.' 2 0000-0001-5213-9299 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Unconventional monooxygenation by the O2-dependent tRNA wobble uridine hydroxylase TrhO' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-025-02129-2 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shin, K.' 1 0009-0009-4788-0539 primary 'Kim, J.' 2 0000-0001-5213-9299 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA uridine(34) hydroxylase' 40520.547 1 1.14.-.- ? ? ? 2 polymer syn 'RNA (76-MER)' 24507.547 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tRNA hydroxylation protein O' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAGSHHHHHHGMASMTGGQQMGRSGDDDDKMEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSEGINGTV SGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLEDDVDPNETTGQHLKPAEFYEKMQDPNTI VIDARNDYEYDLGHFRGAVRPDIEAFRELPEWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTY GKDPEVQGKLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENEYKYMRSCSHECRTN PRNLYVKEHNMTEEEVNARLAAIETEDHAAAE ; ;MAGSHHHHHHGMASMTGGQQMGRSGDDDDKMEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSEGINGTV SGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLEDDVDPNETTGQHLKPAEFYEKMQDPNTI VIDARNDYEYDLGHFRGAVRPDIEAFRELPEWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTY GKDPEVQGKLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENEYKYMRSCSHECRTN PRNLYVKEHNMTEEEVNARLAAIETEDHAAAE ; A ? 2 polyribonucleotide no yes ;GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUU(A1L3O)GCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCAC CA ; GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUXGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 MET n 1 13 ALA n 1 14 SER n 1 15 MET n 1 16 THR n 1 17 GLY n 1 18 GLY n 1 19 GLN n 1 20 GLN n 1 21 MET n 1 22 GLY n 1 23 ARG n 1 24 SER n 1 25 GLY n 1 26 ASP n 1 27 ASP n 1 28 ASP n 1 29 ASP n 1 30 LYS n 1 31 MET n 1 32 GLU n 1 33 LYS n 1 34 GLN n 1 35 TYR n 1 36 ARG n 1 37 VAL n 1 38 LEU n 1 39 LEU n 1 40 TYR n 1 41 TYR n 1 42 LYS n 1 43 TYR n 1 44 VAL n 1 45 PRO n 1 46 ILE n 1 47 GLU n 1 48 ASP n 1 49 PRO n 1 50 GLU n 1 51 ALA n 1 52 PHE n 1 53 ARG n 1 54 GLU n 1 55 GLN n 1 56 HIS n 1 57 LEU n 1 58 ALA n 1 59 PHE n 1 60 CYS n 1 61 LYS n 1 62 GLU n 1 63 LEU n 1 64 GLY n 1 65 LEU n 1 66 LEU n 1 67 GLY n 1 68 ARG n 1 69 ILE n 1 70 LEU n 1 71 VAL n 1 72 SER n 1 73 SER n 1 74 GLU n 1 75 GLY n 1 76 ILE n 1 77 ASN n 1 78 GLY n 1 79 THR n 1 80 VAL n 1 81 SER n 1 82 GLY n 1 83 THR n 1 84 VAL n 1 85 GLU n 1 86 GLN n 1 87 THR n 1 88 GLU n 1 89 LYS n 1 90 TYR n 1 91 MET n 1 92 GLU n 1 93 THR n 1 94 MET n 1 95 LYS n 1 96 ALA n 1 97 ASP n 1 98 PRO n 1 99 ARG n 1 100 PHE n 1 101 ALA n 1 102 ASP n 1 103 MET n 1 104 VAL n 1 105 PHE n 1 106 LYS n 1 107 ILE n 1 108 ASP n 1 109 GLU n 1 110 ALA n 1 111 GLU n 1 112 GLY n 1 113 HIS n 1 114 ALA n 1 115 PHE n 1 116 LYS n 1 117 LYS n 1 118 ILE n 1 119 PHE n 1 120 VAL n 1 121 ARG n 1 122 HIS n 1 123 LYS n 1 124 LYS n 1 125 GLU n 1 126 LEU n 1 127 VAL n 1 128 THR n 1 129 LEU n 1 130 ARG n 1 131 LEU n 1 132 GLU n 1 133 ASP n 1 134 ASP n 1 135 VAL n 1 136 ASP n 1 137 PRO n 1 138 ASN n 1 139 GLU n 1 140 THR n 1 141 THR n 1 142 GLY n 1 143 GLN n 1 144 HIS n 1 145 LEU n 1 146 LYS n 1 147 PRO n 1 148 ALA n 1 149 GLU n 1 150 PHE n 1 151 TYR n 1 152 GLU n 1 153 LYS n 1 154 MET n 1 155 GLN n 1 156 ASP n 1 157 PRO n 1 158 ASN n 1 159 THR n 1 160 ILE n 1 161 VAL n 1 162 ILE n 1 163 ASP n 1 164 ALA n 1 165 ARG n 1 166 ASN n 1 167 ASP n 1 168 TYR n 1 169 GLU n 1 170 TYR n 1 171 ASP n 1 172 LEU n 1 173 GLY n 1 174 HIS n 1 175 PHE n 1 176 ARG n 1 177 GLY n 1 178 ALA n 1 179 VAL n 1 180 ARG n 1 181 PRO n 1 182 ASP n 1 183 ILE n 1 184 GLU n 1 185 ALA n 1 186 PHE n 1 187 ARG n 1 188 GLU n 1 189 LEU n 1 190 PRO n 1 191 GLU n 1 192 TRP n 1 193 ILE n 1 194 GLU n 1 195 GLU n 1 196 HIS n 1 197 LYS n 1 198 ASP n 1 199 MET n 1 200 LEU n 1 201 GLU n 1 202 GLY n 1 203 LYS n 1 204 LYS n 1 205 ILE n 1 206 LEU n 1 207 THR n 1 208 TYR n 1 209 CYS n 1 210 THR n 1 211 GLY n 1 212 GLY n 1 213 VAL n 1 214 ARG n 1 215 CYS n 1 216 GLU n 1 217 LYS n 1 218 PHE n 1 219 SER n 1 220 GLY n 1 221 TRP n 1 222 LEU n 1 223 VAL n 1 224 LYS n 1 225 GLN n 1 226 GLY n 1 227 PHE n 1 228 GLU n 1 229 ASP n 1 230 VAL n 1 231 ALA n 1 232 GLN n 1 233 LEU n 1 234 ASP n 1 235 GLY n 1 236 GLY n 1 237 ILE n 1 238 VAL n 1 239 THR n 1 240 TYR n 1 241 GLY n 1 242 LYS n 1 243 ASP n 1 244 PRO n 1 245 GLU n 1 246 VAL n 1 247 GLN n 1 248 GLY n 1 249 LYS n 1 250 LEU n 1 251 TRP n 1 252 ASP n 1 253 GLY n 1 254 GLN n 1 255 CYS n 1 256 TYR n 1 257 VAL n 1 258 PHE n 1 259 ASP n 1 260 GLU n 1 261 ARG n 1 262 ILE n 1 263 SER n 1 264 VAL n 1 265 PRO n 1 266 VAL n 1 267 ASN n 1 268 ARG n 1 269 VAL n 1 270 GLU n 1 271 HIS n 1 272 VAL n 1 273 ILE n 1 274 VAL n 1 275 GLY n 1 276 LYS n 1 277 ASP n 1 278 TYR n 1 279 PHE n 1 280 THR n 1 281 GLY n 1 282 GLU n 1 283 PRO n 1 284 CYS n 1 285 GLU n 1 286 ARG n 1 287 TYR n 1 288 VAL n 1 289 ASN n 1 290 CYS n 1 291 ALA n 1 292 ASN n 1 293 PRO n 1 294 SER n 1 295 CYS n 1 296 ASN n 1 297 LYS n 1 298 LYS n 1 299 MET n 1 300 ILE n 1 301 CYS n 1 302 THR n 1 303 PRO n 1 304 GLU n 1 305 ASN n 1 306 GLU n 1 307 TYR n 1 308 LYS n 1 309 TYR n 1 310 MET n 1 311 ARG n 1 312 SER n 1 313 CYS n 1 314 SER n 1 315 HIS n 1 316 GLU n 1 317 CYS n 1 318 ARG n 1 319 THR n 1 320 ASN n 1 321 PRO n 1 322 ARG n 1 323 ASN n 1 324 LEU n 1 325 TYR n 1 326 VAL n 1 327 LYS n 1 328 GLU n 1 329 HIS n 1 330 ASN n 1 331 MET n 1 332 THR n 1 333 GLU n 1 334 GLU n 1 335 GLU n 1 336 VAL n 1 337 ASN n 1 338 ALA n 1 339 ARG n 1 340 LEU n 1 341 ALA n 1 342 ALA n 1 343 ILE n 1 344 GLU n 1 345 THR n 1 346 GLU n 1 347 ASP n 1 348 HIS n 1 349 ALA n 1 350 ALA n 1 351 ALA n 1 352 GLU n 2 1 G n 2 2 G n 2 3 G n 2 4 G n 2 5 C n 2 6 C n 2 7 U n 2 8 U n 2 9 A n 2 10 G n 2 11 C n 2 12 U n 2 13 C n 2 14 A n 2 15 G n 2 16 C n 2 17 U n 2 18 G n 2 19 G n 2 20 G n 2 21 A n 2 22 G n 2 23 A n 2 24 G n 2 25 C n 2 26 G n 2 27 C n 2 28 C n 2 29 U n 2 30 G n 2 31 C n 2 32 U n 2 33 U n 2 34 A1L3O n 2 35 G n 2 36 C n 2 37 A n 2 38 C n 2 39 G n 2 40 C n 2 41 A n 2 42 G n 2 43 G n 2 44 A n 2 45 G n 2 46 G n 2 47 U n 2 48 C n 2 49 A n 2 50 G n 2 51 C n 2 52 G n 2 53 G n 2 54 U n 2 55 U n 2 56 C n 2 57 G n 2 58 A n 2 59 U n 2 60 C n 2 61 C n 2 62 C n 2 63 G n 2 64 C n 2 65 U n 2 66 A n 2 67 G n 2 68 G n 2 69 C n 2 70 U n 2 71 C n 2 72 C n 2 73 A n 2 74 C n 2 75 C n 2 76 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 352 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'trhO, ybfQ, BSU02330' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis subsp. subtilis str. 168' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 76 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis subsp. subtilis str. 168' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 224308 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1L3O non-polymer . ;5-Hydroxyuridine 5'-phosphate ; ;[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[5-oxidanyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate ; 'C9 H13 N2 O10 P' 340.181 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -29 ? ? ? A . n A 1 2 ALA 2 -28 ? ? ? A . n A 1 3 GLY 3 -27 ? ? ? A . n A 1 4 SER 4 -26 ? ? ? A . n A 1 5 HIS 5 -25 ? ? ? A . n A 1 6 HIS 6 -24 ? ? ? A . n A 1 7 HIS 7 -23 ? ? ? A . n A 1 8 HIS 8 -22 ? ? ? A . n A 1 9 HIS 9 -21 ? ? ? A . n A 1 10 HIS 10 -20 ? ? ? A . n A 1 11 GLY 11 -19 ? ? ? A . n A 1 12 MET 12 -18 ? ? ? A . n A 1 13 ALA 13 -17 ? ? ? A . n A 1 14 SER 14 -16 ? ? ? A . n A 1 15 MET 15 -15 ? ? ? A . n A 1 16 THR 16 -14 ? ? ? A . n A 1 17 GLY 17 -13 ? ? ? A . n A 1 18 GLY 18 -12 ? ? ? A . n A 1 19 GLN 19 -11 ? ? ? A . n A 1 20 GLN 20 -10 ? ? ? A . n A 1 21 MET 21 -9 ? ? ? A . n A 1 22 GLY 22 -8 ? ? ? A . n A 1 23 ARG 23 -7 ? ? ? A . n A 1 24 SER 24 -6 ? ? ? A . n A 1 25 GLY 25 -5 ? ? ? A . n A 1 26 ASP 26 -4 ? ? ? A . n A 1 27 ASP 27 -3 ? ? ? A . n A 1 28 ASP 28 -2 ? ? ? A . n A 1 29 ASP 29 -1 ? ? ? A . n A 1 30 LYS 30 0 ? ? ? A . n A 1 31 MET 31 1 1 MET MET A . n A 1 32 GLU 32 2 2 GLU GLU A . n A 1 33 LYS 33 3 3 LYS LYS A . n A 1 34 GLN 34 4 4 GLN GLN A . n A 1 35 TYR 35 5 5 TYR TYR A . n A 1 36 ARG 36 6 6 ARG ARG A . n A 1 37 VAL 37 7 7 VAL VAL A . n A 1 38 LEU 38 8 8 LEU LEU A . n A 1 39 LEU 39 9 9 LEU LEU A . n A 1 40 TYR 40 10 10 TYR TYR A . n A 1 41 TYR 41 11 11 TYR TYR A . n A 1 42 LYS 42 12 12 LYS LYS A . n A 1 43 TYR 43 13 13 TYR TYR A . n A 1 44 VAL 44 14 14 VAL VAL A . n A 1 45 PRO 45 15 15 PRO PRO A . n A 1 46 ILE 46 16 16 ILE ILE A . n A 1 47 GLU 47 17 17 GLU GLU A . n A 1 48 ASP 48 18 18 ASP ASP A . n A 1 49 PRO 49 19 19 PRO PRO A . n A 1 50 GLU 50 20 20 GLU GLU A . n A 1 51 ALA 51 21 21 ALA ALA A . n A 1 52 PHE 52 22 22 PHE PHE A . n A 1 53 ARG 53 23 23 ARG ARG A . n A 1 54 GLU 54 24 24 GLU GLU A . n A 1 55 GLN 55 25 25 GLN GLN A . n A 1 56 HIS 56 26 26 HIS HIS A . n A 1 57 LEU 57 27 27 LEU LEU A . n A 1 58 ALA 58 28 28 ALA ALA A . n A 1 59 PHE 59 29 29 PHE PHE A . n A 1 60 CYS 60 30 30 CYS CYS A . n A 1 61 LYS 61 31 31 LYS LYS A . n A 1 62 GLU 62 32 32 GLU GLU A . n A 1 63 LEU 63 33 33 LEU LEU A . n A 1 64 GLY 64 34 34 GLY GLY A . n A 1 65 LEU 65 35 35 LEU LEU A . n A 1 66 LEU 66 36 36 LEU LEU A . n A 1 67 GLY 67 37 37 GLY GLY A . n A 1 68 ARG 68 38 38 ARG ARG A . n A 1 69 ILE 69 39 39 ILE ILE A . n A 1 70 LEU 70 40 40 LEU LEU A . n A 1 71 VAL 71 41 41 VAL VAL A . n A 1 72 SER 72 42 42 SER SER A . n A 1 73 SER 73 43 43 SER SER A . n A 1 74 GLU 74 44 44 GLU GLU A . n A 1 75 GLY 75 45 45 GLY GLY A . n A 1 76 ILE 76 46 46 ILE ILE A . n A 1 77 ASN 77 47 47 ASN ASN A . n A 1 78 GLY 78 48 48 GLY GLY A . n A 1 79 THR 79 49 49 THR THR A . n A 1 80 VAL 80 50 50 VAL VAL A . n A 1 81 SER 81 51 51 SER SER A . n A 1 82 GLY 82 52 52 GLY GLY A . n A 1 83 THR 83 53 53 THR THR A . n A 1 84 VAL 84 54 54 VAL VAL A . n A 1 85 GLU 85 55 55 GLU GLU A . n A 1 86 GLN 86 56 56 GLN GLN A . n A 1 87 THR 87 57 57 THR THR A . n A 1 88 GLU 88 58 58 GLU GLU A . n A 1 89 LYS 89 59 59 LYS LYS A . n A 1 90 TYR 90 60 60 TYR TYR A . n A 1 91 MET 91 61 61 MET MET A . n A 1 92 GLU 92 62 62 GLU GLU A . n A 1 93 THR 93 63 63 THR THR A . n A 1 94 MET 94 64 64 MET MET A . n A 1 95 LYS 95 65 65 LYS LYS A . n A 1 96 ALA 96 66 66 ALA ALA A . n A 1 97 ASP 97 67 67 ASP ASP A . n A 1 98 PRO 98 68 68 PRO PRO A . n A 1 99 ARG 99 69 69 ARG ARG A . n A 1 100 PHE 100 70 70 PHE PHE A . n A 1 101 ALA 101 71 71 ALA ALA A . n A 1 102 ASP 102 72 72 ASP ASP A . n A 1 103 MET 103 73 73 MET MET A . n A 1 104 VAL 104 74 74 VAL VAL A . n A 1 105 PHE 105 75 75 PHE PHE A . n A 1 106 LYS 106 76 76 LYS LYS A . n A 1 107 ILE 107 77 77 ILE ILE A . n A 1 108 ASP 108 78 78 ASP ASP A . n A 1 109 GLU 109 79 79 GLU GLU A . n A 1 110 ALA 110 80 80 ALA ALA A . n A 1 111 GLU 111 81 81 GLU GLU A . n A 1 112 GLY 112 82 82 GLY GLY A . n A 1 113 HIS 113 83 83 HIS HIS A . n A 1 114 ALA 114 84 84 ALA ALA A . n A 1 115 PHE 115 85 85 PHE PHE A . n A 1 116 LYS 116 86 86 LYS LYS A . n A 1 117 LYS 117 87 87 LYS LYS A . n A 1 118 ILE 118 88 88 ILE ILE A . n A 1 119 PHE 119 89 89 PHE PHE A . n A 1 120 VAL 120 90 90 VAL VAL A . n A 1 121 ARG 121 91 91 ARG ARG A . n A 1 122 HIS 122 92 92 HIS HIS A . n A 1 123 LYS 123 93 93 LYS LYS A . n A 1 124 LYS 124 94 94 LYS LYS A . n A 1 125 GLU 125 95 95 GLU GLU A . n A 1 126 LEU 126 96 96 LEU LEU A . n A 1 127 VAL 127 97 97 VAL VAL A . n A 1 128 THR 128 98 98 THR THR A . n A 1 129 LEU 129 99 99 LEU LEU A . n A 1 130 ARG 130 100 100 ARG ARG A . n A 1 131 LEU 131 101 101 LEU LEU A . n A 1 132 GLU 132 102 102 GLU GLU A . n A 1 133 ASP 133 103 103 ASP ASP A . n A 1 134 ASP 134 104 104 ASP ASP A . n A 1 135 VAL 135 105 105 VAL VAL A . n A 1 136 ASP 136 106 106 ASP ASP A . n A 1 137 PRO 137 107 107 PRO PRO A . n A 1 138 ASN 138 108 108 ASN ASN A . n A 1 139 GLU 139 109 109 GLU GLU A . n A 1 140 THR 140 110 110 THR THR A . n A 1 141 THR 141 111 111 THR THR A . n A 1 142 GLY 142 112 112 GLY GLY A . n A 1 143 GLN 143 113 113 GLN GLN A . n A 1 144 HIS 144 114 114 HIS HIS A . n A 1 145 LEU 145 115 115 LEU LEU A . n A 1 146 LYS 146 116 116 LYS LYS A . n A 1 147 PRO 147 117 117 PRO PRO A . n A 1 148 ALA 148 118 118 ALA ALA A . n A 1 149 GLU 149 119 119 GLU GLU A . n A 1 150 PHE 150 120 120 PHE PHE A . n A 1 151 TYR 151 121 121 TYR TYR A . n A 1 152 GLU 152 122 122 GLU GLU A . n A 1 153 LYS 153 123 123 LYS LYS A . n A 1 154 MET 154 124 124 MET MET A . n A 1 155 GLN 155 125 125 GLN GLN A . n A 1 156 ASP 156 126 126 ASP ASP A . n A 1 157 PRO 157 127 127 PRO PRO A . n A 1 158 ASN 158 128 128 ASN ASN A . n A 1 159 THR 159 129 129 THR THR A . n A 1 160 ILE 160 130 130 ILE ILE A . n A 1 161 VAL 161 131 131 VAL VAL A . n A 1 162 ILE 162 132 132 ILE ILE A . n A 1 163 ASP 163 133 133 ASP ASP A . n A 1 164 ALA 164 134 134 ALA ALA A . n A 1 165 ARG 165 135 135 ARG ARG A . n A 1 166 ASN 166 136 136 ASN ASN A . n A 1 167 ASP 167 137 137 ASP ASP A . n A 1 168 TYR 168 138 138 TYR TYR A . n A 1 169 GLU 169 139 139 GLU GLU A . n A 1 170 TYR 170 140 140 TYR TYR A . n A 1 171 ASP 171 141 141 ASP ASP A . n A 1 172 LEU 172 142 142 LEU LEU A . n A 1 173 GLY 173 143 143 GLY GLY A . n A 1 174 HIS 174 144 144 HIS HIS A . n A 1 175 PHE 175 145 145 PHE PHE A . n A 1 176 ARG 176 146 146 ARG ARG A . n A 1 177 GLY 177 147 147 GLY GLY A . n A 1 178 ALA 178 148 148 ALA ALA A . n A 1 179 VAL 179 149 149 VAL VAL A . n A 1 180 ARG 180 150 150 ARG ARG A . n A 1 181 PRO 181 151 151 PRO PRO A . n A 1 182 ASP 182 152 152 ASP ASP A . n A 1 183 ILE 183 153 153 ILE ILE A . n A 1 184 GLU 184 154 154 GLU GLU A . n A 1 185 ALA 185 155 155 ALA ALA A . n A 1 186 PHE 186 156 156 PHE PHE A . n A 1 187 ARG 187 157 157 ARG ARG A . n A 1 188 GLU 188 158 158 GLU GLU A . n A 1 189 LEU 189 159 159 LEU LEU A . n A 1 190 PRO 190 160 160 PRO PRO A . n A 1 191 GLU 191 161 161 GLU GLU A . n A 1 192 TRP 192 162 162 TRP TRP A . n A 1 193 ILE 193 163 163 ILE ILE A . n A 1 194 GLU 194 164 164 GLU GLU A . n A 1 195 GLU 195 165 165 GLU GLU A . n A 1 196 HIS 196 166 166 HIS HIS A . n A 1 197 LYS 197 167 167 LYS LYS A . n A 1 198 ASP 198 168 168 ASP ASP A . n A 1 199 MET 199 169 169 MET MET A . n A 1 200 LEU 200 170 170 LEU LEU A . n A 1 201 GLU 201 171 171 GLU GLU A . n A 1 202 GLY 202 172 172 GLY GLY A . n A 1 203 LYS 203 173 173 LYS LYS A . n A 1 204 LYS 204 174 174 LYS LYS A . n A 1 205 ILE 205 175 175 ILE ILE A . n A 1 206 LEU 206 176 176 LEU LEU A . n A 1 207 THR 207 177 177 THR THR A . n A 1 208 TYR 208 178 178 TYR TYR A . n A 1 209 CYS 209 179 179 CYS CYS A . n A 1 210 THR 210 180 180 THR THR A . n A 1 211 GLY 211 181 181 GLY GLY A . n A 1 212 GLY 212 182 182 GLY GLY A . n A 1 213 VAL 213 183 183 VAL VAL A . n A 1 214 ARG 214 184 184 ARG ARG A . n A 1 215 CYS 215 185 185 CYS CYS A . n A 1 216 GLU 216 186 186 GLU GLU A . n A 1 217 LYS 217 187 187 LYS LYS A . n A 1 218 PHE 218 188 188 PHE PHE A . n A 1 219 SER 219 189 189 SER SER A . n A 1 220 GLY 220 190 190 GLY GLY A . n A 1 221 TRP 221 191 191 TRP TRP A . n A 1 222 LEU 222 192 192 LEU LEU A . n A 1 223 VAL 223 193 193 VAL VAL A . n A 1 224 LYS 224 194 194 LYS LYS A . n A 1 225 GLN 225 195 195 GLN GLN A . n A 1 226 GLY 226 196 196 GLY GLY A . n A 1 227 PHE 227 197 197 PHE PHE A . n A 1 228 GLU 228 198 198 GLU GLU A . n A 1 229 ASP 229 199 199 ASP ASP A . n A 1 230 VAL 230 200 200 VAL VAL A . n A 1 231 ALA 231 201 201 ALA ALA A . n A 1 232 GLN 232 202 202 GLN GLN A . n A 1 233 LEU 233 203 203 LEU LEU A . n A 1 234 ASP 234 204 204 ASP ASP A . n A 1 235 GLY 235 205 205 GLY GLY A . n A 1 236 GLY 236 206 206 GLY GLY A . n A 1 237 ILE 237 207 207 ILE ILE A . n A 1 238 VAL 238 208 208 VAL VAL A . n A 1 239 THR 239 209 209 THR THR A . n A 1 240 TYR 240 210 210 TYR TYR A . n A 1 241 GLY 241 211 211 GLY GLY A . n A 1 242 LYS 242 212 212 LYS LYS A . n A 1 243 ASP 243 213 213 ASP ASP A . n A 1 244 PRO 244 214 214 PRO PRO A . n A 1 245 GLU 245 215 215 GLU GLU A . n A 1 246 VAL 246 216 216 VAL VAL A . n A 1 247 GLN 247 217 217 GLN GLN A . n A 1 248 GLY 248 218 218 GLY GLY A . n A 1 249 LYS 249 219 219 LYS LYS A . n A 1 250 LEU 250 220 220 LEU LEU A . n A 1 251 TRP 251 221 221 TRP TRP A . n A 1 252 ASP 252 222 222 ASP ASP A . n A 1 253 GLY 253 223 223 GLY GLY A . n A 1 254 GLN 254 224 224 GLN GLN A . n A 1 255 CYS 255 225 225 CYS CYS A . n A 1 256 TYR 256 226 226 TYR TYR A . n A 1 257 VAL 257 227 227 VAL VAL A . n A 1 258 PHE 258 228 228 PHE PHE A . n A 1 259 ASP 259 229 229 ASP ASP A . n A 1 260 GLU 260 230 230 GLU GLU A . n A 1 261 ARG 261 231 231 ARG ARG A . n A 1 262 ILE 262 232 232 ILE ILE A . n A 1 263 SER 263 233 233 SER SER A . n A 1 264 VAL 264 234 234 VAL VAL A . n A 1 265 PRO 265 235 235 PRO PRO A . n A 1 266 VAL 266 236 236 VAL VAL A . n A 1 267 ASN 267 237 237 ASN ASN A . n A 1 268 ARG 268 238 238 ARG ARG A . n A 1 269 VAL 269 239 239 VAL VAL A . n A 1 270 GLU 270 240 240 GLU GLU A . n A 1 271 HIS 271 241 241 HIS HIS A . n A 1 272 VAL 272 242 242 VAL VAL A . n A 1 273 ILE 273 243 243 ILE ILE A . n A 1 274 VAL 274 244 244 VAL VAL A . n A 1 275 GLY 275 245 245 GLY GLY A . n A 1 276 LYS 276 246 246 LYS LYS A . n A 1 277 ASP 277 247 247 ASP ASP A . n A 1 278 TYR 278 248 248 TYR TYR A . n A 1 279 PHE 279 249 249 PHE PHE A . n A 1 280 THR 280 250 250 THR THR A . n A 1 281 GLY 281 251 251 GLY GLY A . n A 1 282 GLU 282 252 252 GLU GLU A . n A 1 283 PRO 283 253 253 PRO PRO A . n A 1 284 CYS 284 254 254 CYS CYS A . n A 1 285 GLU 285 255 255 GLU GLU A . n A 1 286 ARG 286 256 256 ARG ARG A . n A 1 287 TYR 287 257 257 TYR TYR A . n A 1 288 VAL 288 258 258 VAL VAL A . n A 1 289 ASN 289 259 259 ASN ASN A . n A 1 290 CYS 290 260 260 CYS CYS A . n A 1 291 ALA 291 261 261 ALA ALA A . n A 1 292 ASN 292 262 262 ASN ASN A . n A 1 293 PRO 293 263 263 PRO PRO A . n A 1 294 SER 294 264 264 SER SER A . n A 1 295 CYS 295 265 265 CYS CYS A . n A 1 296 ASN 296 266 266 ASN ASN A . n A 1 297 LYS 297 267 267 LYS LYS A . n A 1 298 LYS 298 268 268 LYS LYS A . n A 1 299 MET 299 269 269 MET MET A . n A 1 300 ILE 300 270 270 ILE ILE A . n A 1 301 CYS 301 271 271 CYS CYS A . n A 1 302 THR 302 272 272 THR THR A . n A 1 303 PRO 303 273 273 PRO PRO A . n A 1 304 GLU 304 274 274 GLU GLU A . n A 1 305 ASN 305 275 275 ASN ASN A . n A 1 306 GLU 306 276 276 GLU GLU A . n A 1 307 TYR 307 277 277 TYR TYR A . n A 1 308 LYS 308 278 278 LYS LYS A . n A 1 309 TYR 309 279 279 TYR TYR A . n A 1 310 MET 310 280 280 MET MET A . n A 1 311 ARG 311 281 281 ARG ARG A . n A 1 312 SER 312 282 282 SER SER A . n A 1 313 CYS 313 283 283 CYS CYS A . n A 1 314 SER 314 284 284 SER SER A . n A 1 315 HIS 315 285 285 HIS HIS A . n A 1 316 GLU 316 286 286 GLU GLU A . n A 1 317 CYS 317 287 287 CYS CYS A . n A 1 318 ARG 318 288 288 ARG ARG A . n A 1 319 THR 319 289 289 THR THR A . n A 1 320 ASN 320 290 290 ASN ASN A . n A 1 321 PRO 321 291 291 PRO PRO A . n A 1 322 ARG 322 292 292 ARG ARG A . n A 1 323 ASN 323 293 293 ASN ASN A . n A 1 324 LEU 324 294 294 LEU LEU A . n A 1 325 TYR 325 295 295 TYR TYR A . n A 1 326 VAL 326 296 296 VAL VAL A . n A 1 327 LYS 327 297 297 LYS LYS A . n A 1 328 GLU 328 298 298 GLU GLU A . n A 1 329 HIS 329 299 299 HIS HIS A . n A 1 330 ASN 330 300 300 ASN ASN A . n A 1 331 MET 331 301 301 MET MET A . n A 1 332 THR 332 302 302 THR THR A . n A 1 333 GLU 333 303 303 GLU GLU A . n A 1 334 GLU 334 304 304 GLU GLU A . n A 1 335 GLU 335 305 305 GLU GLU A . n A 1 336 VAL 336 306 306 VAL VAL A . n A 1 337 ASN 337 307 307 ASN ASN A . n A 1 338 ALA 338 308 308 ALA ALA A . n A 1 339 ARG 339 309 309 ARG ARG A . n A 1 340 LEU 340 310 310 LEU LEU A . n A 1 341 ALA 341 311 311 ALA ALA A . n A 1 342 ALA 342 312 312 ALA ALA A . n A 1 343 ILE 343 313 313 ILE ILE A . n A 1 344 GLU 344 314 314 GLU GLU A . n A 1 345 THR 345 315 315 THR THR A . n A 1 346 GLU 346 316 316 GLU GLU A . n A 1 347 ASP 347 317 317 ASP ASP A . n A 1 348 HIS 348 318 ? ? ? A . n A 1 349 ALA 349 319 ? ? ? A . n A 1 350 ALA 350 320 ? ? ? A . n A 1 351 ALA 351 321 ? ? ? A . n A 1 352 GLU 352 322 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 C 5 5 5 C C B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 U 8 8 8 U U B . n B 2 9 A 9 9 9 A A B . n B 2 10 G 10 10 10 G G B . n B 2 11 C 11 11 11 C C B . n B 2 12 U 12 12 12 U U B . n B 2 13 C 13 13 13 C C B . n B 2 14 A 14 14 14 A A B . n B 2 15 G 15 15 15 G G B . n B 2 16 C 16 16 16 C C B . n B 2 17 U 17 17 ? ? ? B . n B 2 18 G 18 18 ? ? ? B . n B 2 19 G 19 19 19 G G B . n B 2 20 G 20 20 20 G G B . n B 2 21 A 21 21 21 A A B . n B 2 22 G 22 22 22 G G B . n B 2 23 A 23 23 23 A A B . n B 2 24 G 24 24 24 G G B . n B 2 25 C 25 25 25 C C B . n B 2 26 G 26 26 26 G G B . n B 2 27 C 27 27 27 C C B . n B 2 28 C 28 28 28 C C B . n B 2 29 U 29 29 29 U U B . n B 2 30 G 30 30 30 G G B . n B 2 31 C 31 31 31 C C B . n B 2 32 U 32 32 32 U U B . n B 2 33 U 33 33 33 U U B . n B 2 34 A1L3O 34 34 34 A1L3O O5U B . n B 2 35 G 35 35 35 G G B . n B 2 36 C 36 36 36 C C B . n B 2 37 A 37 37 37 A A B . n B 2 38 C 38 38 38 C C B . n B 2 39 G 39 39 39 G G B . n B 2 40 C 40 40 40 C C B . n B 2 41 A 41 41 41 A A B . n B 2 42 G 42 42 42 G G B . n B 2 43 G 43 43 43 G G B . n B 2 44 A 44 44 44 A A B . n B 2 45 G 45 45 45 G G B . n B 2 46 G 46 46 46 G G B . n B 2 47 U 47 47 47 U U B . n B 2 48 C 48 48 48 C C B . n B 2 49 A 49 49 49 A A B . n B 2 50 G 50 50 50 G G B . n B 2 51 C 51 51 51 C C B . n B 2 52 G 52 52 52 G G B . n B 2 53 G 53 53 53 G G B . n B 2 54 U 54 54 54 U U B . n B 2 55 U 55 55 55 U U B . n B 2 56 C 56 56 56 C C B . n B 2 57 G 57 57 57 G G B . n B 2 58 A 58 58 58 A A B . n B 2 59 U 59 59 59 U U B . n B 2 60 C 60 60 60 C C B . n B 2 61 C 61 61 61 C C B . n B 2 62 C 62 62 62 C C B . n B 2 63 G 63 63 63 G G B . n B 2 64 C 64 64 64 C C B . n B 2 65 U 65 65 65 U U B . n B 2 66 A 66 66 66 A A B . n B 2 67 G 67 67 67 G G B . n B 2 68 G 68 68 68 G G B . n B 2 69 C 69 69 69 C C B . n B 2 70 U 70 70 70 U U B . n B 2 71 C 71 71 71 C C B . n B 2 72 C 72 72 72 C C B . n B 2 73 A 73 73 73 A A B . n B 2 74 C 74 74 ? ? ? B . n B 2 75 C 75 75 ? ? ? B . n B 2 76 A 76 76 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1L3O _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1L3O _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 400 _pdbx_nonpoly_scheme.auth_seq_num 400 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9J5O _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9J5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9J5O _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9J5O _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 4332 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.485 ? 6197 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 22.532 ? 1436 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.035 ? 726 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 541 ? f_plane_restr ? ? # _struct.entry_id 9J5O _struct.title 'Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9J5O _struct_keywords.text 'Hydroxylase, tRNA post-transcriptional modification, TrhO, ho5U, Hydroxylase-RNA complex, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP TRHO_BACSU O31457 ? 1 ;MEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSEGINGTVSGTVEQTEKYMETMKADPRFADMVFKIDEA EGHAFKKIFVRHKKELVTLRLEDDVDPNETTGQHLKPAEFYEKMQDPNTIVIDARNDYEYDLGHFRGAVRPDIEAFRELP EWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTYGKDPEVQGKLWDGQCYVFDERISVPVNRVE HVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENEYKYMRSCSHECRTNPRNLYVKEHNMTEEEVNARLAAIETEDHAA AE ; 1 2 PDB 9J5O 9J5O ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9J5O A 31 ? 352 ? O31457 1 ? 322 ? 1 322 2 2 9J5O B 1 ? 76 ? 9J5O 1 ? 76 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9J5O MET A 1 ? UNP O31457 ? ? 'initiating methionine' -29 1 1 9J5O ALA A 2 ? UNP O31457 ? ? 'expression tag' -28 2 1 9J5O GLY A 3 ? UNP O31457 ? ? 'expression tag' -27 3 1 9J5O SER A 4 ? UNP O31457 ? ? 'expression tag' -26 4 1 9J5O HIS A 5 ? UNP O31457 ? ? 'expression tag' -25 5 1 9J5O HIS A 6 ? UNP O31457 ? ? 'expression tag' -24 6 1 9J5O HIS A 7 ? UNP O31457 ? ? 'expression tag' -23 7 1 9J5O HIS A 8 ? UNP O31457 ? ? 'expression tag' -22 8 1 9J5O HIS A 9 ? UNP O31457 ? ? 'expression tag' -21 9 1 9J5O HIS A 10 ? UNP O31457 ? ? 'expression tag' -20 10 1 9J5O GLY A 11 ? UNP O31457 ? ? 'expression tag' -19 11 1 9J5O MET A 12 ? UNP O31457 ? ? 'expression tag' -18 12 1 9J5O ALA A 13 ? UNP O31457 ? ? 'expression tag' -17 13 1 9J5O SER A 14 ? UNP O31457 ? ? 'expression tag' -16 14 1 9J5O MET A 15 ? UNP O31457 ? ? 'expression tag' -15 15 1 9J5O THR A 16 ? UNP O31457 ? ? 'expression tag' -14 16 1 9J5O GLY A 17 ? UNP O31457 ? ? 'expression tag' -13 17 1 9J5O GLY A 18 ? UNP O31457 ? ? 'expression tag' -12 18 1 9J5O GLN A 19 ? UNP O31457 ? ? 'expression tag' -11 19 1 9J5O GLN A 20 ? UNP O31457 ? ? 'expression tag' -10 20 1 9J5O MET A 21 ? UNP O31457 ? ? 'expression tag' -9 21 1 9J5O GLY A 22 ? UNP O31457 ? ? 'expression tag' -8 22 1 9J5O ARG A 23 ? UNP O31457 ? ? 'expression tag' -7 23 1 9J5O SER A 24 ? UNP O31457 ? ? 'expression tag' -6 24 1 9J5O GLY A 25 ? UNP O31457 ? ? 'expression tag' -5 25 1 9J5O ASP A 26 ? UNP O31457 ? ? 'expression tag' -4 26 1 9J5O ASP A 27 ? UNP O31457 ? ? 'expression tag' -3 27 1 9J5O ASP A 28 ? UNP O31457 ? ? 'expression tag' -2 28 1 9J5O ASP A 29 ? UNP O31457 ? ? 'expression tag' -1 29 1 9J5O LYS A 30 ? UNP O31457 ? ? 'expression tag' 0 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 48 ? GLY A 64 ? ASP A 18 GLY A 34 1 ? 17 HELX_P HELX_P2 AA2 VAL A 84 ? ASP A 97 ? VAL A 54 ASP A 67 1 ? 14 HELX_P HELX_P3 AA3 PRO A 98 ? ALA A 101 ? PRO A 68 ALA A 71 5 ? 4 HELX_P HELX_P4 AA4 LYS A 146 ? ASP A 156 ? LYS A 116 ASP A 126 1 ? 11 HELX_P HELX_P5 AA5 ASN A 166 ? LEU A 172 ? ASN A 136 LEU A 142 1 ? 7 HELX_P HELX_P6 AA6 ALA A 185 ? ARG A 187 ? ALA A 155 ARG A 157 5 ? 3 HELX_P HELX_P7 AA7 GLU A 188 ? HIS A 196 ? GLU A 158 HIS A 166 1 ? 9 HELX_P HELX_P8 AA8 GLY A 212 ? GLN A 225 ? GLY A 182 GLN A 195 1 ? 14 HELX_P HELX_P9 AA9 GLY A 235 ? ASP A 243 ? GLY A 205 ASP A 213 1 ? 9 HELX_P HELX_P10 AB1 THR A 302 ? TYR A 309 ? THR A 272 TYR A 279 1 ? 8 HELX_P HELX_P11 AB2 SER A 314 ? THR A 319 ? SER A 284 THR A 289 1 ? 6 HELX_P HELX_P12 AB3 ASN A 323 ? HIS A 329 ? ASN A 293 HIS A 299 1 ? 7 HELX_P HELX_P13 AB4 THR A 332 ? ASP A 347 ? THR A 302 ASP A 317 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B U 33 "O3'" ? ? ? 1_555 B A1L3O 34 P ? ? B U 33 B A1L3O 34 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale one ? B A1L3O 34 "O3'" ? ? ? 1_555 B G 35 P ? ? B A1L3O 34 B G 35 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? A CYS 290 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 260 A ZN 400 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc2 metalc ? ? A CYS 295 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 265 A ZN 400 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc3 metalc ? ? A CYS 313 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 283 A ZN 400 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc4 metalc ? ? A CYS 317 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 287 A ZN 400 1_555 ? ? ? ? ? ? ? 2.331 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 72 N3 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 72 O2 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 72 N4 ? ? B G 1 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 71 N3 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 71 O2 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 71 N4 ? ? B G 2 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B U 70 O2 ? ? B G 3 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? B G 3 O6 ? ? ? 1_555 B U 70 N3 ? ? B G 3 B U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 4 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 68 N1 ? ? B C 5 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 68 O6 ? ? B C 5 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 68 N2 ? ? B C 5 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 67 N1 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 67 O6 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 67 N2 ? ? B C 6 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 66 N1 ? ? B U 7 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 66 N6 ? ? B U 7 B A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 14 N7 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? B U 8 O2 ? ? ? 1_555 B A 14 N6 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? B U 8 N3 ? ? ? 1_555 B G 15 O6 ? ? B U 8 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? B U 8 O2 ? ? ? 1_555 B G 15 N1 ? ? B U 8 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? B A 9 N6 ? ? ? 1_555 B A 23 N7 ? ? B A 9 B A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog25 hydrog ? ? B A 9 N7 ? ? ? 1_555 B A 23 N6 ? ? B A 9 B A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog26 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 10 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 10 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 10 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B G 10 O6 ? ? ? 1_555 B G 45 N2 ? ? B G 10 B G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog30 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 11 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 23 N1 ? ? B U 12 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 23 N6 ? ? B U 12 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 22 N1 ? ? B C 13 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 22 O6 ? ? B C 13 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 22 N2 ? ? B C 13 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 15 N2 ? ? ? 1_555 B A 21 N3 ? ? B G 15 B A 21 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog39 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 48 N3 ? ? B G 15 B C 48 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog40 hydrog ? ? B G 19 N1 ? ? ? 1_555 B U 55 O2 ? ? B G 19 B U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? B G 22 N7 ? ? ? 1_555 B G 46 N1 ? ? B G 22 B G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? B G 22 O6 ? ? ? 1_555 B G 46 N2 ? ? B G 22 B G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog43 hydrog ? ? B G 26 N1 ? ? ? 1_555 B A 44 N1 ? ? B G 26 B A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? B G 26 O6 ? ? ? 1_555 B A 44 N6 ? ? B G 26 B A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? B C 27 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 27 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 27 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B C 28 N3 ? ? ? 1_555 B G 42 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 28 N4 ? ? ? 1_555 B G 42 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 28 O2 ? ? ? 1_555 B G 42 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B U 29 N3 ? ? ? 1_555 B A 41 N1 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B U 29 O4 ? ? ? 1_555 B A 41 N6 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 30 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 30 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 30 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 31 N3 ? ? ? 1_555 B G 39 N1 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 31 N4 ? ? ? 1_555 B G 39 O6 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 31 O2 ? ? ? 1_555 B G 39 N2 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B U 32 O4 ? ? ? 1_555 B C 38 N4 ? ? B U 32 B C 38 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog60 hydrog ? ? B U 32 O4 ? ? ? 1_555 B G 39 N1 ? ? B U 32 B G 39 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog61 hydrog ? ? B A 49 N1 ? ? ? 1_555 B U 65 N3 ? ? B A 49 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 49 N6 ? ? ? 1_555 B U 65 O4 ? ? B A 49 B U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 50 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 50 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 50 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 50 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 51 N3 ? ? ? 1_555 B G 63 N1 ? ? B C 51 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 51 N4 ? ? ? 1_555 B G 63 O6 ? ? B C 51 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 51 O2 ? ? ? 1_555 B G 63 N2 ? ? B C 51 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 52 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 52 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 52 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 53 N1 ? ? ? 1_555 B C 61 N3 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 53 N2 ? ? ? 1_555 B C 61 O2 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 53 O6 ? ? ? 1_555 B C 61 N4 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 54 N3 ? ? ? 1_555 B A 58 N7 ? ? B U 54 B A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog76 hydrog ? ? B U 54 O2 ? ? ? 1_555 B A 58 N6 ? ? B U 54 B A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 290 ? A CYS 260 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 295 ? A CYS 265 ? 1_555 113.7 ? 2 SG ? A CYS 290 ? A CYS 260 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 313 ? A CYS 283 ? 1_555 112.0 ? 3 SG ? A CYS 295 ? A CYS 265 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 313 ? A CYS 283 ? 1_555 102.5 ? 4 SG ? A CYS 290 ? A CYS 260 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 317 ? A CYS 287 ? 1_555 109.2 ? 5 SG ? A CYS 295 ? A CYS 265 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 317 ? A CYS 287 ? 1_555 110.6 ? 6 SG ? A CYS 313 ? A CYS 283 ? 1_555 ZN ? C ZN . ? A ZN 400 ? 1_555 SG ? A CYS 317 ? A CYS 287 ? 1_555 108.6 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 105 ? LYS A 106 ? PHE A 75 LYS A 76 AA1 2 TYR A 35 ? LYS A 42 ? TYR A 5 LYS A 12 AA1 3 GLU A 109 ? ALA A 110 ? GLU A 79 ALA A 80 AA2 1 PHE A 105 ? LYS A 106 ? PHE A 75 LYS A 76 AA2 2 TYR A 35 ? LYS A 42 ? TYR A 5 LYS A 12 AA2 3 ILE A 76 ? THR A 83 ? ILE A 46 THR A 53 AA2 4 LEU A 66 ? VAL A 71 ? LEU A 36 VAL A 41 AA2 5 PHE A 119 ? HIS A 122 ? PHE A 89 HIS A 92 AA3 1 GLN A 143 ? LEU A 145 ? GLN A 113 LEU A 115 AA3 2 ALA A 231 ? LEU A 233 ? ALA A 201 LEU A 203 AA3 3 LYS A 204 ? TYR A 208 ? LYS A 174 TYR A 178 AA3 4 THR A 159 ? ASP A 163 ? THR A 129 ASP A 133 AA4 1 GLY A 173 ? PHE A 175 ? GLY A 143 PHE A 145 AA4 2 TRP A 251 ? TYR A 256 ? TRP A 221 TYR A 226 AA4 3 SER A 263 ? PRO A 265 ? SER A 233 PRO A 235 AA5 1 TYR A 287 ? ASN A 289 ? TYR A 257 ASN A 259 AA5 2 LYS A 298 ? ILE A 300 ? LYS A 268 ILE A 270 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS A 106 ? O LYS A 76 N LEU A 39 ? N LEU A 9 AA1 2 3 N TYR A 35 ? N TYR A 5 O ALA A 110 ? O ALA A 80 AA2 1 2 O LYS A 106 ? O LYS A 76 N LEU A 39 ? N LEU A 9 AA2 2 3 N LYS A 42 ? N LYS A 12 O ILE A 76 ? O ILE A 46 AA2 3 4 O THR A 79 ? O THR A 49 N ARG A 68 ? N ARG A 38 AA2 4 5 N ILE A 69 ? N ILE A 39 O PHE A 119 ? O PHE A 89 AA3 1 2 N LEU A 145 ? N LEU A 115 O GLN A 232 ? O GLN A 202 AA3 2 3 O ALA A 231 ? O ALA A 201 N ILE A 205 ? N ILE A 175 AA3 3 4 O LEU A 206 ? O LEU A 176 N ILE A 160 ? N ILE A 130 AA4 1 2 N HIS A 174 ? N HIS A 144 O ASP A 252 ? O ASP A 222 AA4 2 3 N CYS A 255 ? N CYS A 225 O VAL A 264 ? O VAL A 234 AA5 1 2 N VAL A 288 ? N VAL A 258 O MET A 299 ? O MET A 269 # _pdbx_entry_details.entry_id 9J5O _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 13 ? ? -92.65 58.32 2 1 ASP A 18 ? ? 58.28 75.07 3 1 HIS A 166 ? ? -95.34 55.59 4 1 PHE A 228 ? ? -90.57 53.01 5 1 CYS A 265 ? ? -94.37 -63.11 6 1 MET A 280 ? ? 48.00 -133.24 7 1 THR A 289 ? ? -98.24 31.87 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9J5O _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9J5O _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.04 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 118262 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '25 mM HEPES (pH 7.5), 150 mM NaCl, 0.2 mM TCEP' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Bacillus subtilis TrhO complexed with Alanine-specific tRNA' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9J5O _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 2100 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9J5O _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 297 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9J5O _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -29 ? A MET 1 2 1 Y 1 A ALA -28 ? A ALA 2 3 1 Y 1 A GLY -27 ? A GLY 3 4 1 Y 1 A SER -26 ? A SER 4 5 1 Y 1 A HIS -25 ? A HIS 5 6 1 Y 1 A HIS -24 ? A HIS 6 7 1 Y 1 A HIS -23 ? A HIS 7 8 1 Y 1 A HIS -22 ? A HIS 8 9 1 Y 1 A HIS -21 ? A HIS 9 10 1 Y 1 A HIS -20 ? A HIS 10 11 1 Y 1 A GLY -19 ? A GLY 11 12 1 Y 1 A MET -18 ? A MET 12 13 1 Y 1 A ALA -17 ? A ALA 13 14 1 Y 1 A SER -16 ? A SER 14 15 1 Y 1 A MET -15 ? A MET 15 16 1 Y 1 A THR -14 ? A THR 16 17 1 Y 1 A GLY -13 ? A GLY 17 18 1 Y 1 A GLY -12 ? A GLY 18 19 1 Y 1 A GLN -11 ? A GLN 19 20 1 Y 1 A GLN -10 ? A GLN 20 21 1 Y 1 A MET -9 ? A MET 21 22 1 Y 1 A GLY -8 ? A GLY 22 23 1 Y 1 A ARG -7 ? A ARG 23 24 1 Y 1 A SER -6 ? A SER 24 25 1 Y 1 A GLY -5 ? A GLY 25 26 1 Y 1 A ASP -4 ? A ASP 26 27 1 Y 1 A ASP -3 ? A ASP 27 28 1 Y 1 A ASP -2 ? A ASP 28 29 1 Y 1 A ASP -1 ? A ASP 29 30 1 Y 1 A LYS 0 ? A LYS 30 31 1 Y 1 A HIS 318 ? A HIS 348 32 1 Y 1 A ALA 319 ? A ALA 349 33 1 Y 1 A ALA 320 ? A ALA 350 34 1 Y 1 A ALA 321 ? A ALA 351 35 1 Y 1 A GLU 322 ? A GLU 352 36 1 Y 1 B U 17 ? B U 17 37 1 Y 1 B G 18 ? B G 18 38 1 Y 1 B C 74 ? B C 74 39 1 Y 1 B C 75 ? B C 75 40 1 Y 1 B A 76 ? B A 76 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A1L3O C2 C N N 38 A1L3O C4 C N N 39 A1L3O C5 C N N 40 A1L3O C6 C N N 41 A1L3O "C1'" C N R 42 A1L3O "C2'" C N R 43 A1L3O "C3'" C N S 44 A1L3O "C4'" C N R 45 A1L3O "C5'" C N N 46 A1L3O N1 N N N 47 A1L3O N3 N N N 48 A1L3O O1 O N N 49 A1L3O O2 O N N 50 A1L3O "O2'" O N N 51 A1L3O "O3'" O N N 52 A1L3O O4 O N N 53 A1L3O "O4'" O N N 54 A1L3O "O5'" O N N 55 A1L3O OP1 O N N 56 A1L3O OP2 O N N 57 A1L3O P P N N 58 A1L3O O3P O N N 59 A1L3O H1 H N N 60 A1L3O H2 H N N 61 A1L3O H3 H N N 62 A1L3O H4 H N N 63 A1L3O H5 H N N 64 A1L3O H6 H N N 65 A1L3O H7 H N N 66 A1L3O H8 H N N 67 A1L3O H9 H N N 68 A1L3O H10 H N N 69 A1L3O H11 H N N 70 A1L3O H12 H N N 71 A1L3O H13 H N N 72 ALA N N N N 73 ALA CA C N S 74 ALA C C N N 75 ALA O O N N 76 ALA CB C N N 77 ALA OXT O N N 78 ALA H H N N 79 ALA H2 H N N 80 ALA HA H N N 81 ALA HB1 H N N 82 ALA HB2 H N N 83 ALA HB3 H N N 84 ALA HXT H N N 85 ARG N N N N 86 ARG CA C N S 87 ARG C C N N 88 ARG O O N N 89 ARG CB C N N 90 ARG CG C N N 91 ARG CD C N N 92 ARG NE N N N 93 ARG CZ C N N 94 ARG NH1 N N N 95 ARG NH2 N N N 96 ARG OXT O N N 97 ARG H H N N 98 ARG H2 H N N 99 ARG HA H N N 100 ARG HB2 H N N 101 ARG HB3 H N N 102 ARG HG2 H N N 103 ARG HG3 H N N 104 ARG HD2 H N N 105 ARG HD3 H N N 106 ARG HE H N N 107 ARG HH11 H N N 108 ARG HH12 H N N 109 ARG HH21 H N N 110 ARG HH22 H N N 111 ARG HXT H N N 112 ASN N N N N 113 ASN CA C N S 114 ASN C C N N 115 ASN O O N N 116 ASN CB C N N 117 ASN CG C N N 118 ASN OD1 O N N 119 ASN ND2 N N N 120 ASN OXT O N N 121 ASN H H N N 122 ASN H2 H N N 123 ASN HA H N N 124 ASN HB2 H N N 125 ASN HB3 H N N 126 ASN HD21 H N N 127 ASN HD22 H N N 128 ASN HXT H N N 129 ASP N N N N 130 ASP CA C N S 131 ASP C C N N 132 ASP O O N N 133 ASP CB C N N 134 ASP CG C N N 135 ASP OD1 O N N 136 ASP OD2 O N N 137 ASP OXT O N N 138 ASP H H N N 139 ASP H2 H N N 140 ASP HA H N N 141 ASP HB2 H N N 142 ASP HB3 H N N 143 ASP HD2 H N N 144 ASP HXT H N N 145 C OP3 O N N 146 C P P N N 147 C OP1 O N N 148 C OP2 O N N 149 C "O5'" O N N 150 C "C5'" C N N 151 C "C4'" C N R 152 C "O4'" O N N 153 C "C3'" C N S 154 C "O3'" O N N 155 C "C2'" C N R 156 C "O2'" O N N 157 C "C1'" C N R 158 C N1 N N N 159 C C2 C N N 160 C O2 O N N 161 C N3 N N N 162 C C4 C N N 163 C N4 N N N 164 C C5 C N N 165 C C6 C N N 166 C HOP3 H N N 167 C HOP2 H N N 168 C "H5'" H N N 169 C "H5''" H N N 170 C "H4'" H N N 171 C "H3'" H N N 172 C "HO3'" H N N 173 C "H2'" H N N 174 C "HO2'" H N N 175 C "H1'" H N N 176 C H41 H N N 177 C H42 H N N 178 C H5 H N N 179 C H6 H N N 180 CYS N N N N 181 CYS CA C N R 182 CYS C C N N 183 CYS O O N N 184 CYS CB C N N 185 CYS SG S N N 186 CYS OXT O N N 187 CYS H H N N 188 CYS H2 H N N 189 CYS HA H N N 190 CYS HB2 H N N 191 CYS HB3 H N N 192 CYS HG H N N 193 CYS HXT H N N 194 G OP3 O N N 195 G P P N N 196 G OP1 O N N 197 G OP2 O N N 198 G "O5'" O N N 199 G "C5'" C N N 200 G "C4'" C N R 201 G "O4'" O N N 202 G "C3'" C N S 203 G "O3'" O N N 204 G "C2'" C N R 205 G "O2'" O N N 206 G "C1'" C N R 207 G N9 N Y N 208 G C8 C Y N 209 G N7 N Y N 210 G C5 C Y N 211 G C6 C N N 212 G O6 O N N 213 G N1 N N N 214 G C2 C N N 215 G N2 N N N 216 G N3 N N N 217 G C4 C Y N 218 G HOP3 H N N 219 G HOP2 H N N 220 G "H5'" H N N 221 G "H5''" H N N 222 G "H4'" H N N 223 G "H3'" H N N 224 G "HO3'" H N N 225 G "H2'" H N N 226 G "HO2'" H N N 227 G "H1'" H N N 228 G H8 H N N 229 G H1 H N N 230 G H21 H N N 231 G H22 H N N 232 GLN N N N N 233 GLN CA C N S 234 GLN C C N N 235 GLN O O N N 236 GLN CB C N N 237 GLN CG C N N 238 GLN CD C N N 239 GLN OE1 O N N 240 GLN NE2 N N N 241 GLN OXT O N N 242 GLN H H N N 243 GLN H2 H N N 244 GLN HA H N N 245 GLN HB2 H N N 246 GLN HB3 H N N 247 GLN HG2 H N N 248 GLN HG3 H N N 249 GLN HE21 H N N 250 GLN HE22 H N N 251 GLN HXT H N N 252 GLU N N N N 253 GLU CA C N S 254 GLU C C N N 255 GLU O O N N 256 GLU CB C N N 257 GLU CG C N N 258 GLU CD C N N 259 GLU OE1 O N N 260 GLU OE2 O N N 261 GLU OXT O N N 262 GLU H H N N 263 GLU H2 H N N 264 GLU HA H N N 265 GLU HB2 H N N 266 GLU HB3 H N N 267 GLU HG2 H N N 268 GLU HG3 H N N 269 GLU HE2 H N N 270 GLU HXT H N N 271 GLY N N N N 272 GLY CA C N N 273 GLY C C N N 274 GLY O O N N 275 GLY OXT O N N 276 GLY H H N N 277 GLY H2 H N N 278 GLY HA2 H N N 279 GLY HA3 H N N 280 GLY HXT H N N 281 HIS N N N N 282 HIS CA C N S 283 HIS C C N N 284 HIS O O N N 285 HIS CB C N N 286 HIS CG C Y N 287 HIS ND1 N Y N 288 HIS CD2 C Y N 289 HIS CE1 C Y N 290 HIS NE2 N Y N 291 HIS OXT O N N 292 HIS H H N N 293 HIS H2 H N N 294 HIS HA H N N 295 HIS HB2 H N N 296 HIS HB3 H N N 297 HIS HD1 H N N 298 HIS HD2 H N N 299 HIS HE1 H N N 300 HIS HE2 H N N 301 HIS HXT H N N 302 ILE N N N N 303 ILE CA C N S 304 ILE C C N N 305 ILE O O N N 306 ILE CB C N S 307 ILE CG1 C N N 308 ILE CG2 C N N 309 ILE CD1 C N N 310 ILE OXT O N N 311 ILE H H N N 312 ILE H2 H N N 313 ILE HA H N N 314 ILE HB H N N 315 ILE HG12 H N N 316 ILE HG13 H N N 317 ILE HG21 H N N 318 ILE HG22 H N N 319 ILE HG23 H N N 320 ILE HD11 H N N 321 ILE HD12 H N N 322 ILE HD13 H N N 323 ILE HXT H N N 324 LEU N N N N 325 LEU CA C N S 326 LEU C C N N 327 LEU O O N N 328 LEU CB C N N 329 LEU CG C N N 330 LEU CD1 C N N 331 LEU CD2 C N N 332 LEU OXT O N N 333 LEU H H N N 334 LEU H2 H N N 335 LEU HA H N N 336 LEU HB2 H N N 337 LEU HB3 H N N 338 LEU HG H N N 339 LEU HD11 H N N 340 LEU HD12 H N N 341 LEU HD13 H N N 342 LEU HD21 H N N 343 LEU HD22 H N N 344 LEU HD23 H N N 345 LEU HXT H N N 346 LYS N N N N 347 LYS CA C N S 348 LYS C C N N 349 LYS O O N N 350 LYS CB C N N 351 LYS CG C N N 352 LYS CD C N N 353 LYS CE C N N 354 LYS NZ N N N 355 LYS OXT O N N 356 LYS H H N N 357 LYS H2 H N N 358 LYS HA H N N 359 LYS HB2 H N N 360 LYS HB3 H N N 361 LYS HG2 H N N 362 LYS HG3 H N N 363 LYS HD2 H N N 364 LYS HD3 H N N 365 LYS HE2 H N N 366 LYS HE3 H N N 367 LYS HZ1 H N N 368 LYS HZ2 H N N 369 LYS HZ3 H N N 370 LYS HXT H N N 371 MET N N N N 372 MET CA C N S 373 MET C C N N 374 MET O O N N 375 MET CB C N N 376 MET CG C N N 377 MET SD S N N 378 MET CE C N N 379 MET OXT O N N 380 MET H H N N 381 MET H2 H N N 382 MET HA H N N 383 MET HB2 H N N 384 MET HB3 H N N 385 MET HG2 H N N 386 MET HG3 H N N 387 MET HE1 H N N 388 MET HE2 H N N 389 MET HE3 H N N 390 MET HXT H N N 391 PHE N N N N 392 PHE CA C N S 393 PHE C C N N 394 PHE O O N N 395 PHE CB C N N 396 PHE CG C Y N 397 PHE CD1 C Y N 398 PHE CD2 C Y N 399 PHE CE1 C Y N 400 PHE CE2 C Y N 401 PHE CZ C Y N 402 PHE OXT O N N 403 PHE H H N N 404 PHE H2 H N N 405 PHE HA H N N 406 PHE HB2 H N N 407 PHE HB3 H N N 408 PHE HD1 H N N 409 PHE HD2 H N N 410 PHE HE1 H N N 411 PHE HE2 H N N 412 PHE HZ H N N 413 PHE HXT H N N 414 PRO N N N N 415 PRO CA C N S 416 PRO C C N N 417 PRO O O N N 418 PRO CB C N N 419 PRO CG C N N 420 PRO CD C N N 421 PRO OXT O N N 422 PRO H H N N 423 PRO HA H N N 424 PRO HB2 H N N 425 PRO HB3 H N N 426 PRO HG2 H N N 427 PRO HG3 H N N 428 PRO HD2 H N N 429 PRO HD3 H N N 430 PRO HXT H N N 431 SER N N N N 432 SER CA C N S 433 SER C C N N 434 SER O O N N 435 SER CB C N N 436 SER OG O N N 437 SER OXT O N N 438 SER H H N N 439 SER H2 H N N 440 SER HA H N N 441 SER HB2 H N N 442 SER HB3 H N N 443 SER HG H N N 444 SER HXT H N N 445 THR N N N N 446 THR CA C N S 447 THR C C N N 448 THR O O N N 449 THR CB C N R 450 THR OG1 O N N 451 THR CG2 C N N 452 THR OXT O N N 453 THR H H N N 454 THR H2 H N N 455 THR HA H N N 456 THR HB H N N 457 THR HG1 H N N 458 THR HG21 H N N 459 THR HG22 H N N 460 THR HG23 H N N 461 THR HXT H N N 462 TRP N N N N 463 TRP CA C N S 464 TRP C C N N 465 TRP O O N N 466 TRP CB C N N 467 TRP CG C Y N 468 TRP CD1 C Y N 469 TRP CD2 C Y N 470 TRP NE1 N Y N 471 TRP CE2 C Y N 472 TRP CE3 C Y N 473 TRP CZ2 C Y N 474 TRP CZ3 C Y N 475 TRP CH2 C Y N 476 TRP OXT O N N 477 TRP H H N N 478 TRP H2 H N N 479 TRP HA H N N 480 TRP HB2 H N N 481 TRP HB3 H N N 482 TRP HD1 H N N 483 TRP HE1 H N N 484 TRP HE3 H N N 485 TRP HZ2 H N N 486 TRP HZ3 H N N 487 TRP HH2 H N N 488 TRP HXT H N N 489 TYR N N N N 490 TYR CA C N S 491 TYR C C N N 492 TYR O O N N 493 TYR CB C N N 494 TYR CG C Y N 495 TYR CD1 C Y N 496 TYR CD2 C Y N 497 TYR CE1 C Y N 498 TYR CE2 C Y N 499 TYR CZ C Y N 500 TYR OH O N N 501 TYR OXT O N N 502 TYR H H N N 503 TYR H2 H N N 504 TYR HA H N N 505 TYR HB2 H N N 506 TYR HB3 H N N 507 TYR HD1 H N N 508 TYR HD2 H N N 509 TYR HE1 H N N 510 TYR HE2 H N N 511 TYR HH H N N 512 TYR HXT H N N 513 U OP3 O N N 514 U P P N N 515 U OP1 O N N 516 U OP2 O N N 517 U "O5'" O N N 518 U "C5'" C N N 519 U "C4'" C N R 520 U "O4'" O N N 521 U "C3'" C N S 522 U "O3'" O N N 523 U "C2'" C N R 524 U "O2'" O N N 525 U "C1'" C N R 526 U N1 N N N 527 U C2 C N N 528 U O2 O N N 529 U N3 N N N 530 U C4 C N N 531 U O4 O N N 532 U C5 C N N 533 U C6 C N N 534 U HOP3 H N N 535 U HOP2 H N N 536 U "H5'" H N N 537 U "H5''" H N N 538 U "H4'" H N N 539 U "H3'" H N N 540 U "HO3'" H N N 541 U "H2'" H N N 542 U "HO2'" H N N 543 U "H1'" H N N 544 U H3 H N N 545 U H5 H N N 546 U H6 H N N 547 VAL N N N N 548 VAL CA C N S 549 VAL C C N N 550 VAL O O N N 551 VAL CB C N N 552 VAL CG1 C N N 553 VAL CG2 C N N 554 VAL OXT O N N 555 VAL H H N N 556 VAL H2 H N N 557 VAL HA H N N 558 VAL HB H N N 559 VAL HG11 H N N 560 VAL HG12 H N N 561 VAL HG13 H N N 562 VAL HG21 H N N 563 VAL HG22 H N N 564 VAL HG23 H N N 565 VAL HXT H N N 566 ZN ZN ZN N N 567 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A1L3O "O3'" "C3'" sing N N 40 A1L3O "O2'" "C2'" sing N N 41 A1L3O "C3'" "C2'" sing N N 42 A1L3O "C3'" "C4'" sing N N 43 A1L3O O2 C2 doub N N 44 A1L3O "C2'" "C1'" sing N N 45 A1L3O "C4'" "O4'" sing N N 46 A1L3O "C4'" "C5'" sing N N 47 A1L3O "C1'" "O4'" sing N N 48 A1L3O "C1'" N1 sing N N 49 A1L3O "C5'" "O5'" sing N N 50 A1L3O C2 N1 sing N N 51 A1L3O C2 N3 sing N N 52 A1L3O "O5'" P sing N N 53 A1L3O N1 C6 sing N N 54 A1L3O P OP1 doub N N 55 A1L3O P OP2 sing N N 56 A1L3O N3 C4 sing N N 57 A1L3O C6 C5 doub N N 58 A1L3O C4 C5 sing N N 59 A1L3O C4 O4 doub N N 60 A1L3O C5 O1 sing N N 61 A1L3O P O3P sing N N 62 A1L3O C6 H1 sing N N 63 A1L3O "C1'" H2 sing N N 64 A1L3O "C2'" H3 sing N N 65 A1L3O "C3'" H4 sing N N 66 A1L3O "C4'" H5 sing N N 67 A1L3O "C5'" H6 sing N N 68 A1L3O "C5'" H7 sing N N 69 A1L3O N3 H8 sing N N 70 A1L3O O1 H9 sing N N 71 A1L3O "O2'" H10 sing N N 72 A1L3O "O3'" H11 sing N N 73 A1L3O OP2 H12 sing N N 74 A1L3O O3P H13 sing N N 75 ALA N CA sing N N 76 ALA N H sing N N 77 ALA N H2 sing N N 78 ALA CA C sing N N 79 ALA CA CB sing N N 80 ALA CA HA sing N N 81 ALA C O doub N N 82 ALA C OXT sing N N 83 ALA CB HB1 sing N N 84 ALA CB HB2 sing N N 85 ALA CB HB3 sing N N 86 ALA OXT HXT sing N N 87 ARG N CA sing N N 88 ARG N H sing N N 89 ARG N H2 sing N N 90 ARG CA C sing N N 91 ARG CA CB sing N N 92 ARG CA HA sing N N 93 ARG C O doub N N 94 ARG C OXT sing N N 95 ARG CB CG sing N N 96 ARG CB HB2 sing N N 97 ARG CB HB3 sing N N 98 ARG CG CD sing N N 99 ARG CG HG2 sing N N 100 ARG CG HG3 sing N N 101 ARG CD NE sing N N 102 ARG CD HD2 sing N N 103 ARG CD HD3 sing N N 104 ARG NE CZ sing N N 105 ARG NE HE sing N N 106 ARG CZ NH1 sing N N 107 ARG CZ NH2 doub N N 108 ARG NH1 HH11 sing N N 109 ARG NH1 HH12 sing N N 110 ARG NH2 HH21 sing N N 111 ARG NH2 HH22 sing N N 112 ARG OXT HXT sing N N 113 ASN N CA sing N N 114 ASN N H sing N N 115 ASN N H2 sing N N 116 ASN CA C sing N N 117 ASN CA CB sing N N 118 ASN CA HA sing N N 119 ASN C O doub N N 120 ASN C OXT sing N N 121 ASN CB CG sing N N 122 ASN CB HB2 sing N N 123 ASN CB HB3 sing N N 124 ASN CG OD1 doub N N 125 ASN CG ND2 sing N N 126 ASN ND2 HD21 sing N N 127 ASN ND2 HD22 sing N N 128 ASN OXT HXT sing N N 129 ASP N CA sing N N 130 ASP N H sing N N 131 ASP N H2 sing N N 132 ASP CA C sing N N 133 ASP CA CB sing N N 134 ASP CA HA sing N N 135 ASP C O doub N N 136 ASP C OXT sing N N 137 ASP CB CG sing N N 138 ASP CB HB2 sing N N 139 ASP CB HB3 sing N N 140 ASP CG OD1 doub N N 141 ASP CG OD2 sing N N 142 ASP OD2 HD2 sing N N 143 ASP OXT HXT sing N N 144 C OP3 P sing N N 145 C OP3 HOP3 sing N N 146 C P OP1 doub N N 147 C P OP2 sing N N 148 C P "O5'" sing N N 149 C OP2 HOP2 sing N N 150 C "O5'" "C5'" sing N N 151 C "C5'" "C4'" sing N N 152 C "C5'" "H5'" sing N N 153 C "C5'" "H5''" sing N N 154 C "C4'" "O4'" sing N N 155 C "C4'" "C3'" sing N N 156 C "C4'" "H4'" sing N N 157 C "O4'" "C1'" sing N N 158 C "C3'" "O3'" sing N N 159 C "C3'" "C2'" sing N N 160 C "C3'" "H3'" sing N N 161 C "O3'" "HO3'" sing N N 162 C "C2'" "O2'" sing N N 163 C "C2'" "C1'" sing N N 164 C "C2'" "H2'" sing N N 165 C "O2'" "HO2'" sing N N 166 C "C1'" N1 sing N N 167 C "C1'" "H1'" sing N N 168 C N1 C2 sing N N 169 C N1 C6 sing N N 170 C C2 O2 doub N N 171 C C2 N3 sing N N 172 C N3 C4 doub N N 173 C C4 N4 sing N N 174 C C4 C5 sing N N 175 C N4 H41 sing N N 176 C N4 H42 sing N N 177 C C5 C6 doub N N 178 C C5 H5 sing N N 179 C C6 H6 sing N N 180 CYS N CA sing N N 181 CYS N H sing N N 182 CYS N H2 sing N N 183 CYS CA C sing N N 184 CYS CA CB sing N N 185 CYS CA HA sing N N 186 CYS C O doub N N 187 CYS C OXT sing N N 188 CYS CB SG sing N N 189 CYS CB HB2 sing N N 190 CYS CB HB3 sing N N 191 CYS SG HG sing N N 192 CYS OXT HXT sing N N 193 G OP3 P sing N N 194 G OP3 HOP3 sing N N 195 G P OP1 doub N N 196 G P OP2 sing N N 197 G P "O5'" sing N N 198 G OP2 HOP2 sing N N 199 G "O5'" "C5'" sing N N 200 G "C5'" "C4'" sing N N 201 G "C5'" "H5'" sing N N 202 G "C5'" "H5''" sing N N 203 G "C4'" "O4'" sing N N 204 G "C4'" "C3'" sing N N 205 G "C4'" "H4'" sing N N 206 G "O4'" "C1'" sing N N 207 G "C3'" "O3'" sing N N 208 G "C3'" "C2'" sing N N 209 G "C3'" "H3'" sing N N 210 G "O3'" "HO3'" sing N N 211 G "C2'" "O2'" sing N N 212 G "C2'" "C1'" sing N N 213 G "C2'" "H2'" sing N N 214 G "O2'" "HO2'" sing N N 215 G "C1'" N9 sing N N 216 G "C1'" "H1'" sing N N 217 G N9 C8 sing Y N 218 G N9 C4 sing Y N 219 G C8 N7 doub Y N 220 G C8 H8 sing N N 221 G N7 C5 sing Y N 222 G C5 C6 sing N N 223 G C5 C4 doub Y N 224 G C6 O6 doub N N 225 G C6 N1 sing N N 226 G N1 C2 sing N N 227 G N1 H1 sing N N 228 G C2 N2 sing N N 229 G C2 N3 doub N N 230 G N2 H21 sing N N 231 G N2 H22 sing N N 232 G N3 C4 sing N N 233 GLN N CA sing N N 234 GLN N H sing N N 235 GLN N H2 sing N N 236 GLN CA C sing N N 237 GLN CA CB sing N N 238 GLN CA HA sing N N 239 GLN C O doub N N 240 GLN C OXT sing N N 241 GLN CB CG sing N N 242 GLN CB HB2 sing N N 243 GLN CB HB3 sing N N 244 GLN CG CD sing N N 245 GLN CG HG2 sing N N 246 GLN CG HG3 sing N N 247 GLN CD OE1 doub N N 248 GLN CD NE2 sing N N 249 GLN NE2 HE21 sing N N 250 GLN NE2 HE22 sing N N 251 GLN OXT HXT sing N N 252 GLU N CA sing N N 253 GLU N H sing N N 254 GLU N H2 sing N N 255 GLU CA C sing N N 256 GLU CA CB sing N N 257 GLU CA HA sing N N 258 GLU C O doub N N 259 GLU C OXT sing N N 260 GLU CB CG sing N N 261 GLU CB HB2 sing N N 262 GLU CB HB3 sing N N 263 GLU CG CD sing N N 264 GLU CG HG2 sing N N 265 GLU CG HG3 sing N N 266 GLU CD OE1 doub N N 267 GLU CD OE2 sing N N 268 GLU OE2 HE2 sing N N 269 GLU OXT HXT sing N N 270 GLY N CA sing N N 271 GLY N H sing N N 272 GLY N H2 sing N N 273 GLY CA C sing N N 274 GLY CA HA2 sing N N 275 GLY CA HA3 sing N N 276 GLY C O doub N N 277 GLY C OXT sing N N 278 GLY OXT HXT sing N N 279 HIS N CA sing N N 280 HIS N H sing N N 281 HIS N H2 sing N N 282 HIS CA C sing N N 283 HIS CA CB sing N N 284 HIS CA HA sing N N 285 HIS C O doub N N 286 HIS C OXT sing N N 287 HIS CB CG sing N N 288 HIS CB HB2 sing N N 289 HIS CB HB3 sing N N 290 HIS CG ND1 sing Y N 291 HIS CG CD2 doub Y N 292 HIS ND1 CE1 doub Y N 293 HIS ND1 HD1 sing N N 294 HIS CD2 NE2 sing Y N 295 HIS CD2 HD2 sing N N 296 HIS CE1 NE2 sing Y N 297 HIS CE1 HE1 sing N N 298 HIS NE2 HE2 sing N N 299 HIS OXT HXT sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 U OP3 P sing N N 507 U OP3 HOP3 sing N N 508 U P OP1 doub N N 509 U P OP2 sing N N 510 U P "O5'" sing N N 511 U OP2 HOP2 sing N N 512 U "O5'" "C5'" sing N N 513 U "C5'" "C4'" sing N N 514 U "C5'" "H5'" sing N N 515 U "C5'" "H5''" sing N N 516 U "C4'" "O4'" sing N N 517 U "C4'" "C3'" sing N N 518 U "C4'" "H4'" sing N N 519 U "O4'" "C1'" sing N N 520 U "C3'" "O3'" sing N N 521 U "C3'" "C2'" sing N N 522 U "C3'" "H3'" sing N N 523 U "O3'" "HO3'" sing N N 524 U "C2'" "O2'" sing N N 525 U "C2'" "C1'" sing N N 526 U "C2'" "H2'" sing N N 527 U "O2'" "HO2'" sing N N 528 U "C1'" N1 sing N N 529 U "C1'" "H1'" sing N N 530 U N1 C2 sing N N 531 U N1 C6 sing N N 532 U C2 O2 doub N N 533 U C2 N3 sing N N 534 U N3 C4 sing N N 535 U N3 H3 sing N N 536 U C4 O4 doub N N 537 U C4 C5 sing N N 538 U C5 C6 doub N N 539 U C5 H5 sing N N 540 U C6 H6 sing N N 541 VAL N CA sing N N 542 VAL N H sing N N 543 VAL N H2 sing N N 544 VAL CA C sing N N 545 VAL CA CB sing N N 546 VAL CA HA sing N N 547 VAL C O doub N N 548 VAL C OXT sing N N 549 VAL CB CG1 sing N N 550 VAL CB CG2 sing N N 551 VAL CB HB sing N N 552 VAL CG1 HG11 sing N N 553 VAL CG1 HG12 sing N N 554 VAL CG1 HG13 sing N N 555 VAL CG2 HG21 sing N N 556 VAL CG2 HG22 sing N N 557 VAL CG2 HG23 sing N N 558 VAL OXT HXT sing N N 559 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-13 _em_admin.deposition_site PDBJ _em_admin.entry_id 9J5O _em_admin.last_update 2026-01-21 _em_admin.map_release_date 2026-01-21 _em_admin.title 'Cryo-EM structure of TrhO from B. subtilis complexed with tRNA Ala' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 25 mM C8H18N2O4S 1 HEPES 1 150 mM NaCl 2 'sodium chloride' 1 0.2 mM C9H15O6P 3 TCEP # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.065 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 224308 _em_entity_assembly_naturalsource.organism 'Bacillus subtilis subsp. subtilis str. 168' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 7.15 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60.0 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.21_5207: 'IMAGE ACQUISITION' ? 3 1 ? 1 ? ? MASKING ? 4 1 1 1 ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? OTHER ? 9 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration 1.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9J5O 'double helix' 9J5O 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 72 1_555 -0.180 -0.262 -0.813 -4.911 -0.098 -0.881 1 B_G1:C72_B B 1 ? B 72 ? 19 1 1 B G 2 1_555 B C 71 1_555 -0.138 -0.296 -0.868 -3.430 1.583 -2.188 2 B_G2:C71_B B 2 ? B 71 ? 19 1 1 B G 3 1_555 B U 70 1_555 -0.395 -0.724 -0.398 -2.728 11.064 -2.964 3 B_G3:U70_B B 3 ? B 70 ? 28 1 1 B G 4 1_555 B C 69 1_555 -0.150 -0.289 -1.086 -8.532 0.489 -0.840 4 B_G4:C69_B B 4 ? B 69 ? 19 1 1 B C 5 1_555 B G 68 1_555 0.156 -0.263 -0.794 -2.538 6.062 -1.623 5 B_C5:G68_B B 5 ? B 68 ? 19 1 1 B C 6 1_555 B G 67 1_555 0.191 -0.180 -0.473 -2.674 -1.150 0.705 6 B_C6:G67_B B 6 ? B 67 ? 19 1 1 B U 7 1_555 B A 66 1_555 -0.026 -0.082 0.011 1.061 0.444 -0.270 7 B_U7:A66_B B 7 ? B 66 ? 20 1 1 B A 49 1_555 B U 65 1_555 0.035 -0.179 -0.613 -5.333 -4.830 1.189 8 B_A49:U65_B B 49 ? B 65 ? 20 1 1 B G 50 1_555 B C 64 1_555 -0.174 -0.199 -0.417 -3.725 3.306 -1.079 9 B_G50:C64_B B 50 ? B 64 ? 19 1 1 B C 51 1_555 B G 63 1_555 0.206 -0.156 -0.049 2.851 3.154 0.211 10 B_C51:G63_B B 51 ? B 63 ? 19 1 1 B G 52 1_555 B C 62 1_555 -0.175 -0.179 -0.687 -6.133 -3.287 1.240 11 B_G52:C62_B B 52 ? B 62 ? 19 1 1 B G 53 1_555 B C 61 1_555 -0.084 -0.217 -0.683 -5.540 12.426 -2.804 12 B_G53:C61_B B 53 ? B 61 ? 19 1 1 B U 54 1_555 B A 58 1_555 3.596 -1.255 -0.276 3.629 11.201 -102.802 13 B_U54:A58_B B 54 ? B 58 ? 24 4 1 B U 55 1_555 B G 19 1_555 0.389 -5.473 -0.622 16.458 11.871 -97.930 14 B_U55:G19_B B 55 ? B 19 ? ? 6 1 B C 38 1_555 B U 32 1_555 1.933 2.899 -1.592 -26.614 2.637 -122.688 15 B_C38:U32_B B 38 ? B 32 ? ? ? 1 B G 39 1_555 B C 31 1_555 -0.181 -0.266 -1.185 -8.616 -3.668 1.492 16 B_G39:C31_B B 39 ? B 31 ? 19 1 1 B C 40 1_555 B G 30 1_555 0.251 -0.217 -0.726 7.202 -7.733 2.131 17 B_C40:G30_B B 40 ? B 30 ? 19 1 1 B A 41 1_555 B U 29 1_555 0.082 -0.111 0.454 1.495 -10.268 0.536 18 B_A41:U29_B B 41 ? B 29 ? 20 1 1 B G 42 1_555 B C 28 1_555 -0.231 -0.208 0.174 0.469 -10.008 -1.247 19 B_G42:C28_B B 42 ? B 28 ? 19 1 1 B G 43 1_555 B C 27 1_555 -0.168 -0.210 0.467 -1.612 -11.350 -1.825 20 B_G43:C27_B B 43 ? B 27 ? 19 1 1 B A 44 1_555 B G 26 1_555 0.513 1.445 0.217 -9.373 -7.580 -16.291 21 B_A44:G26_B B 44 ? B 26 ? 8 1 1 B G 10 1_555 B C 25 1_555 -0.182 -0.242 -1.088 -12.139 -1.012 -0.310 22 B_G10:C25_B B 10 ? B 25 ? 19 1 1 B C 11 1_555 B G 24 1_555 0.198 -0.252 -0.469 -4.695 4.052 -2.891 23 B_C11:G24_B B 11 ? B 24 ? 19 1 1 B U 12 1_555 B A 23 1_555 -0.064 -0.079 -0.054 -1.239 4.990 -3.081 24 B_U12:A23_B B 12 ? B 23 ? 20 1 1 B C 13 1_555 B G 22 1_555 0.192 -0.170 0.342 1.223 -1.437 0.221 25 B_C13:G22_B B 13 ? B 22 ? 19 1 1 B A 14 1_555 B U 8 1_555 -3.677 -1.684 -1.194 7.885 1.757 -97.322 26 B_A14:U8_B B 14 ? B 8 ? 24 4 1 B G 15 1_555 B C 48 1_555 0.762 -2.633 -0.970 -7.473 -33.596 -166.903 27 B_G15:C48_B B 15 ? B 48 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 72 1_555 B G 2 1_555 B C 71 1_555 -0.306 -1.281 3.454 -0.628 1.520 31.893 -2.617 0.437 3.396 2.764 1.141 31.934 1 BB_G1G2:C71C72_BB B 1 ? B 72 ? B 2 ? B 71 ? 1 B G 2 1_555 B C 71 1_555 B G 3 1_555 B U 70 1_555 0.410 -1.693 3.319 -4.788 6.997 31.615 -4.158 -1.515 2.800 12.562 8.597 32.704 2 BB_G2G3:U70C71_BB B 2 ? B 71 ? B 3 ? B 70 ? 1 B G 3 1_555 B U 70 1_555 B G 4 1_555 B C 69 1_555 0.143 -1.579 3.396 4.188 14.055 34.340 -4.250 0.306 2.576 22.573 -6.726 37.253 3 BB_G3G4:C69U70_BB B 3 ? B 70 ? B 4 ? B 69 ? 1 B G 4 1_555 B C 69 1_555 B C 5 1_555 B G 68 1_555 -0.287 -1.605 3.152 -3.095 2.475 33.831 -3.114 0.022 3.044 4.234 5.296 34.055 4 BB_G4C5:G68C69_BB B 4 ? B 69 ? B 5 ? B 68 ? 1 B C 5 1_555 B G 68 1_555 B C 6 1_555 B G 67 1_555 0.156 -1.628 3.093 -0.051 11.114 32.047 -4.344 -0.274 2.410 19.416 0.089 33.872 5 BB_C5C6:G67G68_BB B 5 ? B 68 ? B 6 ? B 67 ? 1 B C 6 1_555 B G 67 1_555 B U 7 1_555 B A 66 1_555 -0.083 -1.420 3.241 -0.561 3.741 29.913 -3.466 0.049 3.046 7.210 1.081 30.146 6 BB_C6U7:A66G67_BB B 6 ? B 67 ? B 7 ? B 66 ? 1 B U 7 1_555 B A 66 1_555 B A 49 1_555 B U 65 1_555 0.084 -1.674 3.324 7.684 12.867 36.374 -3.935 0.736 2.575 19.620 -11.717 39.244 7 BB_U7A49:U65A66_BB B 7 ? B 66 ? B 49 ? B 65 ? 1 B A 49 1_555 B U 65 1_555 B G 50 1_555 B C 64 1_555 -0.465 -1.449 3.060 -2.552 6.671 32.541 -3.527 0.429 2.745 11.728 4.487 33.295 8 BB_A49G50:C64U65_BB B 49 ? B 65 ? B 50 ? B 64 ? 1 B G 50 1_555 B C 64 1_555 B C 51 1_555 B G 63 1_555 0.545 -1.619 3.137 -0.750 2.717 33.380 -3.228 -1.062 2.987 4.719 1.303 33.495 9 BB_G50C51:G63C64_BB B 50 ? B 64 ? B 51 ? B 63 ? 1 B C 51 1_555 B G 63 1_555 B G 52 1_555 B C 62 1_555 0.490 -1.658 3.362 6.248 13.020 30.023 -4.955 0.130 2.500 23.500 -11.276 33.244 10 BB_C51G52:C62G63_BB B 51 ? B 63 ? B 52 ? B 62 ? 1 B G 52 1_555 B C 62 1_555 B G 53 1_555 B C 61 1_555 -0.249 -1.734 3.172 -2.865 6.708 31.571 -4.197 -0.019 2.766 12.127 5.180 32.382 11 BB_G52G53:C61C62_BB B 52 ? B 62 ? B 53 ? B 61 ? 1 B G 53 1_555 B C 61 1_555 B U 54 1_555 B A 58 1_555 -2.082 -2.412 3.267 7.115 10.581 84.738 -2.004 1.686 2.860 7.812 -5.253 85.512 12 BB_G53U54:A58C61_BB B 53 ? B 61 ? B 54 ? B 58 ? 1 B U 54 1_555 B A 58 1_555 B U 55 1_555 B G 19 1_555 2.080 -2.132 3.412 8.003 0.289 50.032 -2.515 -1.816 3.671 0.339 -9.393 50.628 13 BB_U54U55:G19A58_BB B 54 ? B 58 ? B 55 ? B 19 ? 1 B C 38 1_555 B U 32 1_555 B G 39 1_555 B C 31 1_555 2.473 0.356 3.467 -4.092 5.147 -11.598 -7.836 5.645 3.639 -23.185 -18.434 -13.327 14 BB_C38G39:C31U32_BB B 38 ? B 32 ? B 39 ? B 31 ? 1 B G 39 1_555 B C 31 1_555 B C 40 1_555 B G 30 1_555 0.302 -0.720 3.015 -0.844 4.039 31.116 -2.020 -0.702 2.892 7.488 1.564 31.382 15 BB_G39C40:G30C31_BB B 39 ? B 31 ? B 40 ? B 30 ? 1 B C 40 1_555 B G 30 1_555 B A 41 1_555 B U 29 1_555 0.557 -1.519 3.111 -2.467 16.212 34.239 -4.109 -1.127 2.157 25.784 3.923 37.858 16 BB_C40A41:U29G30_BB B 40 ? B 30 ? B 41 ? B 29 ? 1 B A 41 1_555 B U 29 1_555 B G 42 1_555 B C 28 1_555 1.008 -2.278 3.083 5.332 8.873 21.764 -7.875 -0.966 2.182 21.972 -13.204 24.073 17 BB_A41G42:C28U29_BB B 41 ? B 29 ? B 42 ? B 28 ? 1 B G 42 1_555 B C 28 1_555 B G 43 1_555 B C 27 1_555 -0.027 -1.679 3.155 0.979 2.539 36.688 -2.987 0.169 3.034 4.028 -1.552 36.785 18 BB_G42G43:C27C28_BB B 42 ? B 28 ? B 43 ? B 27 ? 1 B G 43 1_555 B C 27 1_555 B A 44 1_555 B G 26 1_555 -0.536 -1.599 3.296 5.230 1.764 37.246 -2.705 1.500 3.118 2.743 -8.133 37.638 19 BB_G43A44:G26C27_BB B 43 ? B 27 ? B 44 ? B 26 ? 1 B A 44 1_555 B G 26 1_555 B G 10 1_555 B C 25 1_555 -2.571 -3.657 3.438 24.461 18.134 57.151 -4.045 3.232 1.254 17.651 -23.811 64.147 20 BB_A44G10:C25G26_BB B 44 ? B 26 ? B 10 ? B 25 ? 1 B G 10 1_555 B C 25 1_555 B C 11 1_555 B G 24 1_555 -0.934 -1.291 3.005 -4.194 3.843 34.880 -2.646 0.973 2.939 6.358 6.939 35.326 21 BB_G10C11:G24C25_BB B 10 ? B 25 ? B 11 ? B 24 ? 1 B C 11 1_555 B G 24 1_555 B U 12 1_555 B A 23 1_555 0.265 -1.415 3.120 1.270 8.878 34.752 -3.448 -0.265 2.697 14.565 -2.084 35.856 22 BB_C11U12:A23G24_BB B 11 ? B 24 ? B 12 ? B 23 ? 1 B U 12 1_555 B A 23 1_555 B C 13 1_555 B G 22 1_555 1.592 -2.067 3.042 3.318 9.002 28.083 -5.678 -2.508 2.445 17.903 -6.598 29.645 23 BB_U12C13:G22A23_BB B 12 ? B 23 ? B 13 ? B 22 ? 1 B C 13 1_555 B G 22 1_555 B A 14 1_555 B U 8 1_555 -2.050 -0.248 3.335 1.404 3.482 63.826 -0.386 1.998 3.278 3.291 -1.327 63.924 24 BB_C13A14:U8G22_BB B 13 ? B 22 ? B 14 ? B 8 ? 1 B A 14 1_555 B U 8 1_555 B G 15 1_555 B C 48 1_555 -1.592 -1.509 2.704 4.504 -6.323 103.283 -0.885 1.067 2.716 -4.028 -2.869 103.490 25 BB_A14G15:C48U8_BB B 14 ? B 8 ? B 15 ? B 48 ? # _pdbx_audit_support.funding_organization 'National Research Foundation (NRF, Korea)' _pdbx_audit_support.country 'Korea, Republic Of' _pdbx_audit_support.grant_number 2021R1A2C2009773 _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9J5O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S ZN # loop_ #