HEADER MEMBRANE PROTEIN 22-AUG-24 9J9L TITLE ARTIFICIAL MONONUCLEAR ZN-BOUND METALLOPROTEIN 1 (M1:ZN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PORIN F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OUTER MEMBRANE PROTEIN 1A,OUTER MEMBRANE PROTEIN B,OUTER COMPND 5 MEMBRANE PROTEIN F,OUTER MEMBRANE PROTEIN IA,PORIN OMPF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPF, CMLB, COA, CRY, TOLF, B0929, JW0912; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, ARTIFICIAL METALLOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.J.JEONG,W.J.SONG REVDAT 2 12-NOV-25 9J9L 1 SOURCE REVDAT 1 02-JUL-25 9J9L 0 JRNL AUTH W.J.JEONG,W.J.SONG JRNL TITL METAL-INSTALLER: A PROTEIN DESIGNER TOOL TO CREATE JRNL TITL 2 METAL-BINDING SITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 2.89000 REMARK 3 B12 (A**2) : -0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.372 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2299 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3588 ; 1.492 ; 1.785 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5250 ; 0.520 ; 1.748 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 7.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ; 5.833 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;16.014 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3289 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 687 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1354 ; 4.732 ; 5.387 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1354 ; 4.730 ; 5.386 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1689 ; 6.303 ; 9.668 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1690 ; 6.303 ; 9.668 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1293 ; 5.882 ; 5.868 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1294 ; 5.879 ; 5.869 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1900 ; 8.534 ;10.571 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11131 ;10.292 ;66.460 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11118 ;10.295 ;66.380 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9J9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 8.0, AND 28 % W/V PEG REMARK 280 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 68.49500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -118.63682 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 136.99000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 530 O HOH A 556 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 84 102.84 -169.49 REMARK 500 ALA A 91 -74.60 -31.83 REMARK 500 GLU A 117 -45.56 -130.07 REMARK 500 ASP A 127 49.88 -143.46 REMARK 500 PHE A 128 -77.56 73.51 REMARK 500 PHE A 144 71.61 37.67 REMARK 500 ASN A 236 13.94 58.30 REMARK 500 ASP A 266 -57.99 -29.06 REMARK 500 GLU A 284 109.63 -50.85 REMARK 500 ILE A 286 -32.28 -130.63 REMARK 500 ASN A 293 97.52 -162.08 REMARK 500 ASN A 304 -166.55 -176.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 565 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH A 571 DISTANCE = 8.81 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 9.58 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 13.36 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 17.73 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 17.76 ANGSTROMS REMARK 525 HOH A 577 DISTANCE = 18.50 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 19.11 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 21.22 ANGSTROMS REMARK 525 HOH A 580 DISTANCE = 21.79 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 22.62 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 24.62 ANGSTROMS REMARK 525 HOH A 583 DISTANCE = 27.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 82 NE2 REMARK 620 2 HIS A 102 NE2 111.5 REMARK 620 3 ASP A 132 OD1 102.9 91.6 REMARK 620 4 BCN A 402 N1 133.7 108.3 98.6 REMARK 620 N 1 2 3 DBREF 9J9L A 1 340 UNP P02931 OMPF_ECOLI 23 362 SEQADV 9J9L HIS A 82 UNP P02931 ARG 104 CONFLICT SEQADV 9J9L HIS A 102 UNP P02931 TYR 124 CONFLICT SEQADV 9J9L ASP A 132 UNP P02931 ARG 154 CONFLICT SEQRES 1 A 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 A 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 A 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 A 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 A 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 A 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 A 340 ASN LYS THR HIS LEU ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 A 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY VAL SEQRES 9 A 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 A 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 A 340 GLY ASP VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 A 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 A 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 A 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 A 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 A 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 A 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 A 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 A 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 A 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 A 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 A 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 A 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 A 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 A 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 A 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 A 340 GLN PHE HET ZN A 401 1 HET BCN A 402 11 HETNAM ZN ZINC ION HETNAM BCN BICINE FORMUL 2 ZN ZN 2+ FORMUL 3 BCN C6 H13 N O4 FORMUL 4 HOH *83(H2 O) HELIX 1 AA1 VAL A 105 GLY A 110 1 6 HELIX 2 AA2 TYR A 111 ASP A 113 5 3 HELIX 3 AA3 ASN A 143 LEU A 147 5 5 HELIX 4 AA4 THR A 197 ALA A 202 1 6 SHEET 1 AA119 GLU A 2 LYS A 6 0 SHEET 2 AA119 GLY A 36 ASP A 37 0 SHEET 3 AA119 TYR A 40 GLN A 50 0 SHEET 4 AA119 LEU A 55 GLN A 66 -1 O GLY A 57 N THR A 49 SHEET 5 AA119 LYS A 80 TYR A 90 -1 O LYS A 80 N ASN A 64 SHEET 6 AA119 GLY A 94 HIS A 102 -1 O GLY A 94 N TYR A 90 SHEET 7 AA119 ASP A 132 ASN A 141 -1 O VAL A 133 N ASN A 101 SHEET 8 AA119 LEU A 151 LEU A 158 -1 O VAL A 155 N TYR A 139 SHEET 9 AA119 GLY A 173 TYR A 182 -1 O SER A 179 N ASN A 152 SHEET 10 AA119 PHE A 185 ASP A 195 -1 O PHE A 185 N TYR A 182 SHEET 11 AA119 LYS A 210 ALA A 222 -1 O ALA A 211 N ALA A 194 SHEET 12 AA119 ILE A 225 ASN A 242 -1 O ARG A 235 N GLU A 212 SHEET 13 AA119 THR A 247 TYR A 263 -1 O ASP A 256 N GLY A 232 SHEET 14 AA119 LEU A 269 VAL A 283 -1 O ILE A 273 N ALA A 261 SHEET 15 AA119 GLY A 287 TYR A 302 -1 O VAL A 289 N ALA A 280 SHEET 16 AA119 MET A 307 ASN A 316 -1 O THR A 309 N TYR A 301 SHEET 17 AA119 THR A 331 PHE A 340 -1 O THR A 331 N ILE A 314 SHEET 18 AA119 ASN A 9 PHE A 23 -1 N PHE A 23 O VAL A 332 SHEET 19 AA119 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 LINK NE2 HIS A 82 ZN ZN A 401 1555 1555 2.29 LINK NE2 HIS A 102 ZN ZN A 401 1555 1555 2.02 LINK OD1 ASP A 132 ZN ZN A 401 1555 1555 2.13 LINK ZN ZN A 401 N1 BCN A 402 1555 1555 2.18 CRYST1 136.990 136.990 49.660 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007300 0.004215 0.000000 0.00000 SCALE2 0.000000 0.008429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020137 0.00000 TER 2582 PHE A 340 HETATM 2583 ZN ZN A 401 62.302 -23.040 -20.732 1.00 46.56 ZN HETATM 2584 N1 BCN A 402 63.271 -21.232 -19.985 1.00 56.74 N HETATM 2585 C1 BCN A 402 62.371 -20.244 -19.315 1.00 59.91 C HETATM 2586 C2 BCN A 402 62.877 -19.899 -17.868 1.00 79.52 C HETATM 2587 O21 BCN A 402 62.537 -20.661 -16.847 1.00 78.91 O HETATM 2588 O22 BCN A 402 63.656 -18.878 -17.736 1.00 72.52 O1- HETATM 2589 C3 BCN A 402 63.736 -20.717 -21.263 1.00 49.98 C HETATM 2590 C4 BCN A 402 63.815 -21.773 -22.350 1.00 47.77 C HETATM 2591 O4 BCN A 402 63.871 -20.969 -23.480 1.00 53.18 O HETATM 2592 C5 BCN A 402 64.427 -21.699 -19.141 1.00 55.84 C HETATM 2593 C6 BCN A 402 64.435 -23.228 -19.240 1.00 66.34 C HETATM 2594 O6 BCN A 402 64.761 -23.796 -18.012 1.00 77.56 O HETATM 2595 O HOH A 501 54.768 -5.051 -40.142 1.00 47.64 O HETATM 2596 O HOH A 502 49.903 -32.272 -10.583 1.00 48.96 O HETATM 2597 O HOH A 503 57.304 -33.530 -4.921 1.00 49.43 O HETATM 2598 O HOH A 504 64.220 -21.132 -11.300 1.00 46.79 O HETATM 2599 O HOH A 505 49.082 -32.578 -7.776 1.00 52.07 O HETATM 2600 O HOH A 506 66.543 -18.176 -18.351 1.00 62.82 O HETATM 2601 O HOH A 507 59.492 -26.360 1.540 1.00 60.06 O HETATM 2602 O HOH A 508 80.808 -6.358 -6.530 1.00 65.34 O HETATM 2603 O HOH A 509 71.391 -16.573 -25.745 1.00 55.82 O HETATM 2604 O HOH A 510 55.223 -17.101 -26.800 1.00 59.26 O HETATM 2605 O HOH A 511 53.978 -1.473 4.362 1.00 66.63 O HETATM 2606 O HOH A 512 74.410 -16.266 5.686 1.00 64.99 O HETATM 2607 O HOH A 513 71.306 -5.157 -1.473 1.00 39.82 O HETATM 2608 O HOH A 514 64.167 -26.452 -4.606 1.00 50.56 O HETATM 2609 O HOH A 515 41.822 -20.758 -10.319 1.00 57.97 O HETATM 2610 O HOH A 516 42.384 -18.974 -8.925 1.00 59.98 O HETATM 2611 O HOH A 517 62.950 -12.926 -28.674 1.00 51.62 O HETATM 2612 O HOH A 518 58.566 -15.959 -25.157 1.00 53.51 O HETATM 2613 O HOH A 519 71.590 -25.840 -17.608 1.00 58.15 O HETATM 2614 O HOH A 520 46.482 -12.233 -5.521 1.00 68.20 O HETATM 2615 O HOH A 521 75.172 -18.436 -5.789 1.00 51.72 O HETATM 2616 O HOH A 522 60.013 -5.318 9.138 1.00 52.86 O HETATM 2617 O HOH A 523 48.276 -5.527 -14.019 1.00 67.61 O HETATM 2618 O HOH A 524 48.625 -35.653 -45.162 1.00 44.43 O HETATM 2619 O HOH A 525 70.307 -14.431 -29.835 1.00 48.45 O HETATM 2620 O HOH A 526 43.610 -12.530 -7.489 1.00 61.61 O HETATM 2621 O HOH A 527 46.480 -20.114 -34.653 1.00 46.25 O HETATM 2622 O HOH A 528 56.852 -25.919 -40.852 1.00 55.67 O HETATM 2623 O HOH A 529 78.399 -1.377 -38.053 1.00 59.14 O HETATM 2624 O HOH A 530 72.366 -14.931 -34.506 1.00 65.10 O HETATM 2625 O HOH A 531 73.343 -24.947 -15.889 1.00 66.90 O HETATM 2626 O HOH A 532 39.630 -24.751 -46.184 1.00 64.13 O HETATM 2627 O HOH A 533 49.591 -5.274 -25.352 1.00 60.26 O HETATM 2628 O HOH A 534 46.481 -10.019 -20.607 1.00 56.22 O HETATM 2629 O HOH A 535 71.267 -17.083 -11.327 1.00 61.59 O HETATM 2630 O HOH A 536 87.627 -16.423 -37.297 1.00 49.10 O HETATM 2631 O HOH A 537 48.945 -6.733 -17.608 1.00 55.05 O HETATM 2632 O HOH A 538 78.297 -15.735 -40.105 1.00 61.40 O HETATM 2633 O HOH A 539 83.563 -13.573 -27.519 1.00 69.63 O HETATM 2634 O HOH A 540 83.297 -8.380 -21.949 1.00 54.28 O HETATM 2635 O HOH A 541 84.313 -6.893 -5.561 1.00 69.01 O HETATM 2636 O HOH A 542 52.524 -24.089 -31.967 1.00 43.89 O HETATM 2637 O HOH A 543 75.763 -2.853 -27.240 1.00 46.17 O HETATM 2638 O HOH A 544 38.878 -7.152 -37.624 1.00 59.54 O HETATM 2639 O HOH A 545 42.796 -14.021 -17.460 1.00 50.44 O HETATM 2640 O HOH A 546 46.813 -3.505 -32.309 1.00 55.93 O HETATM 2641 O HOH A 547 79.174 -11.267 -44.024 1.00 65.24 O HETATM 2642 O HOH A 548 77.782 -0.663 -34.774 1.00 59.62 O HETATM 2643 O HOH A 549 48.202 -1.489 -39.899 1.00 64.82 O HETATM 2644 O HOH A 550 88.864 -23.108 -17.560 1.00 55.57 O HETATM 2645 O HOH A 551 71.221 -0.937 -20.076 1.00 68.17 O HETATM 2646 O HOH A 552 64.420 -27.370 -33.156 1.00 73.13 O HETATM 2647 O HOH A 553 86.500 -22.693 -20.509 1.00 63.71 O HETATM 2648 O HOH A 554 42.339 -14.364 -14.803 1.00 56.04 O HETATM 2649 O HOH A 555 35.702 -29.992 -36.594 1.00 70.49 O HETATM 2650 O HOH A 556 73.280 -16.378 -35.237 1.00 62.03 O HETATM 2651 O HOH A 557 49.376 1.078 -34.582 1.00 65.12 O HETATM 2652 O HOH A 558 53.422 -25.929 -33.383 1.00 58.17 O HETATM 2653 O HOH A 559 77.038 -1.179 -17.127 1.00 66.25 O HETATM 2654 O HOH A 560 68.370 -20.522 -19.628 1.00 55.93 O HETATM 2655 O HOH A 561 86.829 -15.346 -31.044 1.00 51.53 O HETATM 2656 O HOH A 562 44.271 -8.582 -15.678 1.00 59.24 O HETATM 2657 O HOH A 563 84.781 -4.855 -38.624 1.00 65.12 O HETATM 2658 O HOH A 564 87.714 -14.549 -16.771 1.00 61.32 O HETATM 2659 O HOH A 565 36.367 -14.413 -34.986 1.00 67.59 O HETATM 2660 O HOH A 566 38.543 -21.117 -1.503 1.00 69.59 O HETATM 2661 O HOH A 567 89.340 -14.553 -14.904 1.00 62.11 O HETATM 2662 O HOH A 568 90.903 -20.833 -27.752 1.00 59.03 O HETATM 2663 O HOH A 569 89.984 -18.947 -33.240 1.00 58.49 O HETATM 2664 O HOH A 570 36.081 -23.558 -25.742 1.00 64.39 O HETATM 2665 O HOH A 571 93.096 -21.965 -19.441 1.00 60.98 O HETATM 2666 O HOH A 572 31.487 -18.856 -6.299 1.00 60.47 O HETATM 2667 O HOH A 573 85.225 0.054 -36.527 1.00 67.62 O HETATM 2668 O HOH A 574 28.975 -10.293 -35.026 1.00 75.75 O HETATM 2669 O HOH A 575 28.064 -37.221 -29.042 1.00 65.84 O HETATM 2670 O HOH A 576 25.431 -40.132 -37.428 1.00 72.55 O HETATM 2671 O HOH A 577 22.228 -36.007 -37.348 1.00 67.91 O HETATM 2672 O HOH A 578 28.257 -0.169 -30.074 1.00 58.28 O HETATM 2673 O HOH A 579 18.272 -33.566 -41.871 1.00 59.66 O HETATM 2674 O HOH A 580 24.584 -38.218 -19.829 1.00 57.05 O HETATM 2675 O HOH A 581 30.657 9.322 -33.406 1.00 72.14 O HETATM 2676 O HOH A 582 17.429 -40.091 -40.722 1.00 57.65 O HETATM 2677 O HOH A 583 12.037 -34.314 -43.887 1.00 62.51 O CONECT 607 2583 CONECT 759 2583 CONECT 986 2583 CONECT 2583 607 759 986 2584 CONECT 2584 2583 2585 2589 2592 CONECT 2585 2584 2586 CONECT 2586 2585 2587 2588 CONECT 2587 2586 CONECT 2588 2586 CONECT 2589 2584 2590 CONECT 2590 2589 2591 CONECT 2591 2590 CONECT 2592 2584 2593 CONECT 2593 2592 2594 CONECT 2594 2593 MASTER 358 0 2 4 19 0 0 6 2676 1 15 27 END