HEADER MEMBRANE PROTEIN 23-AUG-24 9J9N TITLE ARTIFICIAL MONONUCLEAR ZN-BOUND METALLOPROTEIN 2 (M2:ZN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PORIN F; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OUTER MEMBRANE PROTEIN 1A,OUTER MEMBRANE PROTEIN B,OUTER COMPND 5 MEMBRANE PROTEIN F,OUTER MEMBRANE PROTEIN IA,PORIN OMPF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPF, CMLB, COA, CRY, TOLF, B0929, JW0912; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, ARTIFICIAL METALLOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.J.JEONG,W.J.SONG REVDAT 1 02-JUL-25 9J9N 0 JRNL AUTH W.J.JEONG,W.J.SONG JRNL TITL METAL-INSTALLER: A PROTEIN DESIGNER TOOL TO CREATE JRNL TITL 2 METAL-BINDING SITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1602 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 2.67000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.885 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.346 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.292 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5150 ; 0.005 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 4468 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6986 ; 1.296 ; 1.781 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10181 ; 0.462 ; 1.742 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.930 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 4.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;15.903 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6418 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1358 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2642 ; 4.558 ; 6.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2642 ; 4.553 ; 6.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3292 ; 6.905 ;11.629 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3293 ; 6.907 ;11.629 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2508 ; 5.240 ; 6.895 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2509 ; 5.239 ; 6.895 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3695 ; 8.304 ;12.471 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21255 ;11.958 ;79.200 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21256 ;11.958 ;79.200 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9J9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1300050707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MGCL2, 0.1 M MOPS PH 8.0, AND 28 REMARK 280 % W/V PEG 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 68.06000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -117.88338 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 136.12000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 27 REMARK 465 ASN A 69 REMARK 465 SER A 70 REMARK 465 GLU A 71 REMARK 465 GLY A 72 REMARK 465 ALA A 73 REMARK 465 ASP A 74 REMARK 465 ALA A 75 REMARK 465 GLN A 76 REMARK 465 ASN B 27 REMARK 465 ASN B 69 REMARK 465 SER B 70 REMARK 465 GLU B 71 REMARK 465 GLY B 72 REMARK 465 ALA B 73 REMARK 465 ASP B 74 REMARK 465 ALA B 75 REMARK 465 GLN B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS B 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 26 N GLY B 28 2.14 REMARK 500 OD1 ASP B 256 OG SER B 278 2.17 REMARK 500 OG1 THR A 245 OG1 THR A 247 2.17 REMARK 500 OH TYR B 191 OE2 GLU B 212 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER B 53 OD1 ASN B 198 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 89.22 -151.61 REMARK 500 ASN A 35 119.46 -161.41 REMARK 500 GLU A 117 -44.20 -131.01 REMARK 500 PHE A 118 -156.81 -93.70 REMARK 500 PHE A 128 -63.44 82.07 REMARK 500 PHE A 129 -15.09 -148.33 REMARK 500 ASN A 304 -163.24 -172.72 REMARK 500 GLU B 117 -42.41 -131.30 REMARK 500 PHE B 118 -157.87 -96.59 REMARK 500 ASP B 127 42.24 -143.85 REMARK 500 PHE B 128 -63.61 83.28 REMARK 500 PHE B 129 -18.48 -151.06 REMARK 500 ASP B 132 92.41 31.89 REMARK 500 PHE B 144 67.78 38.48 REMARK 500 ASN B 293 98.57 -160.24 REMARK 500 ASN B 304 -166.23 -178.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 102 NE2 85.3 REMARK 620 3 ASP A 132 OD1 130.1 98.4 REMARK 620 4 HOH A 501 O 78.8 71.7 149.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 ND1 REMARK 620 2 HIS B 102 NE2 89.0 REMARK 620 3 HOH B 501 O 96.1 78.1 REMARK 620 N 1 2 DBREF 9J9N A 1 340 UNP P02931 OMPF_ECOLI 23 362 DBREF 9J9N B 1 340 UNP P02931 OMPF_ECOLI 23 362 SEQADV 9J9N HIS A 83 UNP P02931 LEU 105 CONFLICT SEQADV 9J9N HIS A 102 UNP P02931 TYR 124 CONFLICT SEQADV 9J9N ASP A 132 UNP P02931 ARG 154 CONFLICT SEQADV 9J9N HIS B 83 UNP P02931 LEU 105 CONFLICT SEQADV 9J9N HIS B 102 UNP P02931 TYR 124 CONFLICT SEQADV 9J9N ASP B 132 UNP P02931 ARG 154 CONFLICT SEQRES 1 A 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 A 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 A 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 A 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 A 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 A 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 A 340 ASN LYS THR ARG HIS ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 A 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY VAL SEQRES 9 A 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 A 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 A 340 GLY ASP VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 A 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 A 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 A 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 A 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 A 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 A 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 A 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 A 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 A 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 A 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 A 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 A 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 A 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 A 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 A 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 A 340 GLN PHE SEQRES 1 B 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 B 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 B 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 B 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 B 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 B 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 B 340 ASN LYS THR ARG HIS ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 B 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY VAL SEQRES 9 B 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 B 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 B 340 GLY ASP VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 B 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 B 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 B 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 B 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 B 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 B 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 B 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 B 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 B 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 B 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 B 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 B 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 B 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 B 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 B 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 B 340 GLN PHE HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 VAL A 105 GLY A 110 1 6 HELIX 2 AA2 TYR A 111 ASP A 113 5 3 HELIX 3 AA3 SER A 142 LEU A 147 1 6 HELIX 4 AA4 THR A 197 GLN A 203 1 7 HELIX 5 AA5 VAL B 105 GLY B 110 1 6 HELIX 6 AA6 TYR B 111 ASP B 113 5 3 HELIX 7 AA7 ASN B 143 LEU B 147 5 5 HELIX 8 AA8 THR B 197 GLN B 203 1 7 SHEET 1 AA119 GLU A 2 LYS A 6 0 SHEET 2 AA119 GLY A 36 ASP A 37 0 SHEET 3 AA119 TYR A 40 GLN A 50 0 SHEET 4 AA119 LEU A 55 GLN A 66 -1 O GLY A 57 N THR A 49 SHEET 5 AA119 LYS A 80 TYR A 90 -1 O LYS A 80 N ASN A 64 SHEET 6 AA119 GLY A 94 HIS A 102 -1 O ARG A 100 N ALA A 84 SHEET 7 AA119 ASP A 132 ASN A 141 -1 O ARG A 140 N SER A 95 SHEET 8 AA119 LEU A 151 LEU A 158 -1 O VAL A 155 N TYR A 139 SHEET 9 AA119 GLY A 173 TYR A 182 -1 O GLY A 175 N GLN A 156 SHEET 10 AA119 PHE A 185 ASP A 195 -1 O GLY A 189 N ILE A 178 SHEET 11 AA119 LYS A 210 ALA A 222 -1 O ALA A 211 N ALA A 194 SHEET 12 AA119 ILE A 225 ASN A 242 -1 O ARG A 235 N GLU A 212 SHEET 13 AA119 THR A 247 TYR A 263 -1 O THR A 247 N ASN A 242 SHEET 14 AA119 LEU A 269 VAL A 283 -1 O ILE A 273 N ALA A 261 SHEET 15 AA119 GLY A 287 TYR A 302 -1 O VAL A 292 N SER A 278 SHEET 16 AA119 MET A 307 ASN A 316 -1 O THR A 309 N TYR A 301 SHEET 17 AA119 THR A 331 PHE A 340 -1 O VAL A 337 N SER A 308 SHEET 18 AA119 ASN A 9 PHE A 23 -1 N ALA A 17 O TYR A 338 SHEET 19 AA119 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 SHEET 1 AA219 GLU B 2 LYS B 6 0 SHEET 2 AA219 GLY B 36 ASP B 37 0 SHEET 3 AA219 TYR B 40 GLN B 50 0 SHEET 4 AA219 LEU B 55 GLN B 66 -1 O GLY B 59 N GLY B 47 SHEET 5 AA219 LYS B 80 TYR B 90 -1 O LYS B 80 N ASN B 64 SHEET 6 AA219 GLY B 94 ASN B 101 -1 O ARG B 100 N ALA B 84 SHEET 7 AA219 VAL B 133 ASN B 141 -1 O VAL B 133 N ASN B 101 SHEET 8 AA219 LEU B 151 LEU B 158 -1 O VAL B 155 N TYR B 139 SHEET 9 AA219 GLY B 173 TYR B 182 -1 O GLY B 175 N GLN B 156 SHEET 10 AA219 PHE B 185 ASP B 195 -1 O TYR B 191 N GLY B 176 SHEET 11 AA219 LYS B 210 ALA B 222 -1 O ALA B 211 N ALA B 194 SHEET 12 AA219 ILE B 225 ASN B 242 -1 O ARG B 235 N GLU B 212 SHEET 13 AA219 THR B 247 TYR B 263 -1 O THR B 247 N ASN B 242 SHEET 14 AA219 LEU B 269 VAL B 283 -1 O TYR B 275 N LEU B 259 SHEET 15 AA219 GLY B 287 TYR B 302 -1 O VAL B 292 N SER B 278 SHEET 16 AA219 MET B 307 ASN B 316 -1 O TYR B 313 N VAL B 297 SHEET 17 AA219 THR B 331 PHE B 340 -1 O VAL B 337 N SER B 308 SHEET 18 AA219 ASN B 9 PHE B 23 -1 N ALA B 17 O TYR B 338 SHEET 19 AA219 GLY B 36 ASP B 37 -1 O GLY B 36 N TYR B 22 LINK NE2 HIS A 83 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 102 ZN ZN A 401 1555 1555 2.29 LINK OD1 ASP A 132 ZN ZN A 401 1555 1555 2.58 LINK ZN ZN A 401 O HOH A 501 1555 1555 2.25 LINK ND1 HIS B 83 ZN ZN B 401 1555 1555 2.69 LINK NE2 HIS B 102 ZN ZN B 401 1555 1555 2.15 LINK ZN ZN B 401 O HOH B 501 1555 1555 2.26 CRYST1 136.120 136.120 48.880 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007346 0.004241 0.000000 0.00000 SCALE2 0.000000 0.008483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020458 0.00000 TER 2519 PHE A 340 TER 5042 PHE B 340 HETATM 5043 ZN ZN A 401 57.997 -25.790 21.114 1.00 84.99 ZN HETATM 5044 ZN ZN B 401 16.869 -2.022 26.361 1.00 88.02 ZN HETATM 5045 O HOH A 501 56.749 -25.662 22.987 1.00 39.73 O HETATM 5046 O HOH A 502 55.093 -16.053 26.496 1.00 55.98 O HETATM 5047 O HOH A 503 55.074 -24.051 17.793 1.00 49.61 O HETATM 5048 O HOH B 501 17.452 -3.003 24.413 1.00 41.70 O HETATM 5049 O HOH B 502 20.974 1.761 22.439 1.00 64.15 O HETATM 5050 O HOH B 503 22.185 6.482 17.111 1.00 49.67 O HETATM 5051 O HOH B 504 20.976 -13.694 18.347 1.00 48.78 O HETATM 5052 O HOH B 505 19.438 -3.383 29.040 1.00 46.26 O HETATM 5053 O HOH B 506 16.127 -8.437 26.306 1.00 34.92 O HETATM 5054 O HOH B 507 18.379 -13.584 22.043 1.00 64.92 O CONECT 560 5043 CONECT 704 5043 CONECT 931 5043 CONECT 3080 5044 CONECT 3227 5044 CONECT 5043 560 704 931 5045 CONECT 5044 3080 3227 5048 CONECT 5045 5043 CONECT 5048 5044 MASTER 397 0 2 8 38 0 0 6 5052 2 9 54 END