data_9JAK # _entry.id 9JAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JAK pdb_00009jak 10.2210/pdb9jak/pdb WWPDB D_1300050757 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-09 ? 2 'Structure model' 1 1 2025-10-22 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JAK _pdbx_database_status.recvd_initial_deposition_date 2024-08-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email yanjingyu@dicp.ac.cn _pdbx_contact_author.name_first Jingyu _pdbx_contact_author.name_last Yan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7542-2628 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zheng, Y.' 1 ? 'Yan, J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 21 _citation.language ? _citation.page_first e1013298 _citation.page_last e1013298 _citation.title 'Specific binding of human P[28] rotavirus VP8* protein to blood group ABH antigens on type 1 chains.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1013298 _citation.pdbx_database_id_PubMed 40690515 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, Y.' 1 ? primary 'Sun, X.' 2 ? primary 'Li, Y.' 3 ? primary 'Huang, B.' 4 ? primary 'Chen, Y.' 5 ? primary 'Zhou, H.' 6 ? primary 'Cao, C.' 7 ? primary 'Chai, W.' 8 ? primary 'Duan, Z.' 9 ? primary 'Li, D.' 10 ? primary 'Yan, J.' 11 0000-0001-7542-2628 primary 'Liang, X.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer capsid protein VP4' 18954.996 1 ? ? ? ;Sequence reference for Rotavirus (10912) is not available in UniProt at the time of biocuration. Current sequence reference is from UniProt ID B3VSM1. ; 2 branched syn ;alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose ; 853.771 1 ? ? ? ? 3 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLDGPYQPTSFNPPINYWLLLSPTNAGVVMQGTNNTNRWLATLLVEPNVESTTRNYNLFGSSVDITVENTSSDKWKFIDV GKTSLNGSYVQHGTLISSTKLCAAMKHGGNLYTFSGTTPNALPKAYSTTNFDSVNVTTFADFYIISRDNEQKCRQYVNNG LPPIQNTRNLE ; _entity_poly.pdbx_seq_one_letter_code_can ;TLDGPYQPTSFNPPINYWLLLSPTNAGVVMQGTNNTNRWLATLLVEPNVESTTRNYNLFGSSVDITVENTSSDKWKFIDV GKTSLNGSYVQHGTLISSTKLCAAMKHGGNLYTFSGTTPNALPKAYSTTNFDSVNVTTFADFYIISRDNEQKCRQYVNNG LPPIQNTRNLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 ASP n 1 4 GLY n 1 5 PRO n 1 6 TYR n 1 7 GLN n 1 8 PRO n 1 9 THR n 1 10 SER n 1 11 PHE n 1 12 ASN n 1 13 PRO n 1 14 PRO n 1 15 ILE n 1 16 ASN n 1 17 TYR n 1 18 TRP n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 SER n 1 23 PRO n 1 24 THR n 1 25 ASN n 1 26 ALA n 1 27 GLY n 1 28 VAL n 1 29 VAL n 1 30 MET n 1 31 GLN n 1 32 GLY n 1 33 THR n 1 34 ASN n 1 35 ASN n 1 36 THR n 1 37 ASN n 1 38 ARG n 1 39 TRP n 1 40 LEU n 1 41 ALA n 1 42 THR n 1 43 LEU n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 PRO n 1 48 ASN n 1 49 VAL n 1 50 GLU n 1 51 SER n 1 52 THR n 1 53 THR n 1 54 ARG n 1 55 ASN n 1 56 TYR n 1 57 ASN n 1 58 LEU n 1 59 PHE n 1 60 GLY n 1 61 SER n 1 62 SER n 1 63 VAL n 1 64 ASP n 1 65 ILE n 1 66 THR n 1 67 VAL n 1 68 GLU n 1 69 ASN n 1 70 THR n 1 71 SER n 1 72 SER n 1 73 ASP n 1 74 LYS n 1 75 TRP n 1 76 LYS n 1 77 PHE n 1 78 ILE n 1 79 ASP n 1 80 VAL n 1 81 GLY n 1 82 LYS n 1 83 THR n 1 84 SER n 1 85 LEU n 1 86 ASN n 1 87 GLY n 1 88 SER n 1 89 TYR n 1 90 VAL n 1 91 GLN n 1 92 HIS n 1 93 GLY n 1 94 THR n 1 95 LEU n 1 96 ILE n 1 97 SER n 1 98 SER n 1 99 THR n 1 100 LYS n 1 101 LEU n 1 102 CYS n 1 103 ALA n 1 104 ALA n 1 105 MET n 1 106 LYS n 1 107 HIS n 1 108 GLY n 1 109 GLY n 1 110 ASN n 1 111 LEU n 1 112 TYR n 1 113 THR n 1 114 PHE n 1 115 SER n 1 116 GLY n 1 117 THR n 1 118 THR n 1 119 PRO n 1 120 ASN n 1 121 ALA n 1 122 LEU n 1 123 PRO n 1 124 LYS n 1 125 ALA n 1 126 TYR n 1 127 SER n 1 128 THR n 1 129 THR n 1 130 ASN n 1 131 PHE n 1 132 ASP n 1 133 SER n 1 134 VAL n 1 135 ASN n 1 136 VAL n 1 137 THR n 1 138 THR n 1 139 PHE n 1 140 ALA n 1 141 ASP n 1 142 PHE n 1 143 TYR n 1 144 ILE n 1 145 ILE n 1 146 SER n 1 147 ARG n 1 148 ASP n 1 149 ASN n 1 150 GLU n 1 151 GLN n 1 152 LYS n 1 153 CYS n 1 154 ARG n 1 155 GLN n 1 156 TYR n 1 157 VAL n 1 158 ASN n 1 159 ASN n 1 160 GLY n 1 161 LEU n 1 162 PRO n 1 163 PRO n 1 164 ILE n 1 165 GLN n 1 166 ASN n 1 167 THR n 1 168 ARG n 1 169 ASN n 1 170 LEU n 1 171 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 171 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Rotavirus _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10912 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+1)][b-D-GlcpNAc]{[(3+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 NAG C1 O1 2 GAL O3 HO3 sing ? 3 2 4 GAL C1 O1 3 NAG O3 HO3 sing ? 4 2 5 FUC C1 O1 4 GAL O2 HO2 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 64 64 THR THR A . n A 1 2 LEU 2 65 65 LEU LEU A . n A 1 3 ASP 3 66 66 ASP ASP A . n A 1 4 GLY 4 67 67 GLY GLY A . n A 1 5 PRO 5 68 68 PRO PRO A . n A 1 6 TYR 6 69 69 TYR TYR A . n A 1 7 GLN 7 70 70 GLN GLN A . n A 1 8 PRO 8 71 71 PRO PRO A . n A 1 9 THR 9 72 72 THR THR A . n A 1 10 SER 10 73 73 SER SER A . n A 1 11 PHE 11 74 74 PHE PHE A . n A 1 12 ASN 12 75 75 ASN ASN A . n A 1 13 PRO 13 76 76 PRO PRO A . n A 1 14 PRO 14 77 77 PRO PRO A . n A 1 15 ILE 15 78 78 ILE ILE A . n A 1 16 ASN 16 79 79 ASN ASN A . n A 1 17 TYR 17 80 80 TYR TYR A . n A 1 18 TRP 18 81 81 TRP TRP A . n A 1 19 LEU 19 82 82 LEU LEU A . n A 1 20 LEU 20 83 83 LEU LEU A . n A 1 21 LEU 21 84 84 LEU LEU A . n A 1 22 SER 22 85 85 SER SER A . n A 1 23 PRO 23 86 86 PRO PRO A . n A 1 24 THR 24 87 87 THR THR A . n A 1 25 ASN 25 88 88 ASN ASN A . n A 1 26 ALA 26 89 89 ALA ALA A . n A 1 27 GLY 27 90 90 GLY GLY A . n A 1 28 VAL 28 91 91 VAL VAL A . n A 1 29 VAL 29 92 92 VAL VAL A . n A 1 30 MET 30 93 93 MET MET A . n A 1 31 GLN 31 94 94 GLN GLN A . n A 1 32 GLY 32 95 95 GLY GLY A . n A 1 33 THR 33 96 96 THR THR A . n A 1 34 ASN 34 97 97 ASN ASN A . n A 1 35 ASN 35 98 98 ASN ASN A . n A 1 36 THR 36 99 99 THR THR A . n A 1 37 ASN 37 100 100 ASN ASN A . n A 1 38 ARG 38 101 101 ARG ARG A . n A 1 39 TRP 39 102 102 TRP TRP A . n A 1 40 LEU 40 103 103 LEU LEU A . n A 1 41 ALA 41 104 104 ALA ALA A . n A 1 42 THR 42 105 105 THR THR A . n A 1 43 LEU 43 106 106 LEU LEU A . n A 1 44 LEU 44 107 107 LEU LEU A . n A 1 45 VAL 45 108 108 VAL VAL A . n A 1 46 GLU 46 109 109 GLU GLU A . n A 1 47 PRO 47 110 110 PRO PRO A . n A 1 48 ASN 48 111 111 ASN ASN A . n A 1 49 VAL 49 112 112 VAL VAL A . n A 1 50 GLU 50 113 113 GLU GLU A . n A 1 51 SER 51 114 114 SER SER A . n A 1 52 THR 52 115 115 THR THR A . n A 1 53 THR 53 116 116 THR THR A . n A 1 54 ARG 54 117 117 ARG ARG A . n A 1 55 ASN 55 118 118 ASN ASN A . n A 1 56 TYR 56 119 119 TYR TYR A . n A 1 57 ASN 57 120 120 ASN ASN A . n A 1 58 LEU 58 121 121 LEU LEU A . n A 1 59 PHE 59 122 122 PHE PHE A . n A 1 60 GLY 60 123 123 GLY GLY A . n A 1 61 SER 61 124 124 SER SER A . n A 1 62 SER 62 125 125 SER SER A . n A 1 63 VAL 63 126 126 VAL VAL A . n A 1 64 ASP 64 127 127 ASP ASP A . n A 1 65 ILE 65 128 128 ILE ILE A . n A 1 66 THR 66 129 129 THR THR A . n A 1 67 VAL 67 130 130 VAL VAL A . n A 1 68 GLU 68 131 131 GLU GLU A . n A 1 69 ASN 69 132 132 ASN ASN A . n A 1 70 THR 70 133 133 THR THR A . n A 1 71 SER 71 134 134 SER SER A . n A 1 72 SER 72 135 135 SER SER A . n A 1 73 ASP 73 136 136 ASP ASP A . n A 1 74 LYS 74 137 137 LYS LYS A . n A 1 75 TRP 75 138 138 TRP TRP A . n A 1 76 LYS 76 139 139 LYS LYS A . n A 1 77 PHE 77 140 140 PHE PHE A . n A 1 78 ILE 78 141 141 ILE ILE A . n A 1 79 ASP 79 142 142 ASP ASP A . n A 1 80 VAL 80 143 143 VAL VAL A . n A 1 81 GLY 81 144 144 GLY GLY A . n A 1 82 LYS 82 145 145 LYS LYS A . n A 1 83 THR 83 146 146 THR THR A . n A 1 84 SER 84 147 147 SER SER A . n A 1 85 LEU 85 148 148 LEU LEU A . n A 1 86 ASN 86 149 149 ASN ASN A . n A 1 87 GLY 87 150 150 GLY GLY A . n A 1 88 SER 88 151 151 SER SER A . n A 1 89 TYR 89 152 152 TYR TYR A . n A 1 90 VAL 90 153 153 VAL VAL A . n A 1 91 GLN 91 154 154 GLN GLN A . n A 1 92 HIS 92 155 155 HIS HIS A . n A 1 93 GLY 93 156 156 GLY GLY A . n A 1 94 THR 94 157 157 THR THR A . n A 1 95 LEU 95 158 158 LEU LEU A . n A 1 96 ILE 96 159 159 ILE ILE A . n A 1 97 SER 97 160 160 SER SER A . n A 1 98 SER 98 161 161 SER SER A . n A 1 99 THR 99 162 162 THR THR A . n A 1 100 LYS 100 163 163 LYS LYS A . n A 1 101 LEU 101 164 164 LEU LEU A . n A 1 102 CYS 102 165 165 CYS CYS A . n A 1 103 ALA 103 166 166 ALA ALA A . n A 1 104 ALA 104 167 167 ALA ALA A . n A 1 105 MET 105 168 168 MET MET A . n A 1 106 LYS 106 169 169 LYS LYS A . n A 1 107 HIS 107 170 170 HIS HIS A . n A 1 108 GLY 108 171 171 GLY GLY A . n A 1 109 GLY 109 172 172 GLY GLY A . n A 1 110 ASN 110 173 173 ASN ASN A . n A 1 111 LEU 111 174 174 LEU LEU A . n A 1 112 TYR 112 175 175 TYR TYR A . n A 1 113 THR 113 176 176 THR THR A . n A 1 114 PHE 114 177 177 PHE PHE A . n A 1 115 SER 115 178 178 SER SER A . n A 1 116 GLY 116 179 179 GLY GLY A . n A 1 117 THR 117 180 180 THR THR A . n A 1 118 THR 118 181 181 THR THR A . n A 1 119 PRO 119 182 182 PRO PRO A . n A 1 120 ASN 120 183 183 ASN ASN A . n A 1 121 ALA 121 184 184 ALA ALA A . n A 1 122 LEU 122 185 185 LEU LEU A . n A 1 123 PRO 123 186 186 PRO PRO A . n A 1 124 LYS 124 187 187 LYS LYS A . n A 1 125 ALA 125 188 188 ALA ALA A . n A 1 126 TYR 126 189 189 TYR TYR A . n A 1 127 SER 127 190 190 SER SER A . n A 1 128 THR 128 191 191 THR THR A . n A 1 129 THR 129 192 192 THR THR A . n A 1 130 ASN 130 193 193 ASN ASN A . n A 1 131 PHE 131 194 194 PHE PHE A . n A 1 132 ASP 132 195 195 ASP ASP A . n A 1 133 SER 133 196 196 SER SER A . n A 1 134 VAL 134 197 197 VAL VAL A . n A 1 135 ASN 135 198 198 ASN ASN A . n A 1 136 VAL 136 199 199 VAL VAL A . n A 1 137 THR 137 200 200 THR THR A . n A 1 138 THR 138 201 201 THR THR A . n A 1 139 PHE 139 202 202 PHE PHE A . n A 1 140 ALA 140 203 203 ALA ALA A . n A 1 141 ASP 141 204 204 ASP ASP A . n A 1 142 PHE 142 205 205 PHE PHE A . n A 1 143 TYR 143 206 206 TYR TYR A . n A 1 144 ILE 144 207 207 ILE ILE A . n A 1 145 ILE 145 208 208 ILE ILE A . n A 1 146 SER 146 209 209 SER SER A . n A 1 147 ARG 147 210 210 ARG ARG A . n A 1 148 ASP 148 211 211 ASP ASP A . n A 1 149 ASN 149 212 212 ASN ASN A . n A 1 150 GLU 150 213 213 GLU GLU A . n A 1 151 GLN 151 214 214 GLN GLN A . n A 1 152 LYS 152 215 215 LYS LYS A . n A 1 153 CYS 153 216 216 CYS CYS A . n A 1 154 ARG 154 217 217 ARG ARG A . n A 1 155 GLN 155 218 218 GLN GLN A . n A 1 156 TYR 156 219 219 TYR TYR A . n A 1 157 VAL 157 220 220 VAL VAL A . n A 1 158 ASN 158 221 221 ASN ASN A . n A 1 159 ASN 159 222 222 ASN ASN A . n A 1 160 GLY 160 223 223 GLY GLY A . n A 1 161 LEU 161 224 224 LEU LEU A . n A 1 162 PRO 162 225 225 PRO PRO A . n A 1 163 PRO 163 226 226 PRO PRO A . n A 1 164 ILE 164 227 227 ILE ILE A . n A 1 165 GLN 165 228 228 GLN GLN A . n A 1 166 ASN 166 229 229 ASN ASN A . n A 1 167 THR 167 230 230 THR THR A . n A 1 168 ARG 168 231 231 ARG ARG A . n A 1 169 ASN 169 232 232 ASN ASN A . n A 1 170 LEU 170 233 233 LEU LEU A . n A 1 171 GLU 171 234 234 GLU GLU A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 A DRG 259 n B 2 GAL 2 B GAL 2 A DRG 259 n B 2 NAG 3 B NAG 3 A DRG 259 n B 2 GAL 4 B GAL 4 A DRG 259 n B 2 FUC 5 B FUC 5 A DRG 259 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 BGC ? ? BGC ? ? 'SUBJECT OF INVESTIGATION' ? 2 GAL ? ? GAL ? ? 'SUBJECT OF INVESTIGATION' ? 3 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? 4 FUC ? ? FUC ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 301 150 HOH HOH A . C 3 HOH 2 302 200 HOH HOH A . C 3 HOH 3 303 139 HOH HOH A . C 3 HOH 4 304 42 HOH HOH A . C 3 HOH 5 305 97 HOH HOH A . C 3 HOH 6 306 88 HOH HOH A . C 3 HOH 7 307 51 HOH HOH A . C 3 HOH 8 308 101 HOH HOH A . C 3 HOH 9 309 38 HOH HOH A . C 3 HOH 10 310 67 HOH HOH A . C 3 HOH 11 311 19 HOH HOH A . C 3 HOH 12 312 103 HOH HOH A . C 3 HOH 13 313 4 HOH HOH A . C 3 HOH 14 314 123 HOH HOH A . C 3 HOH 15 315 53 HOH HOH A . C 3 HOH 16 316 160 HOH HOH A . C 3 HOH 17 317 119 HOH HOH A . C 3 HOH 18 318 6 HOH HOH A . C 3 HOH 19 319 172 HOH HOH A . C 3 HOH 20 320 128 HOH HOH A . C 3 HOH 21 321 23 HOH HOH A . C 3 HOH 22 322 69 HOH HOH A . C 3 HOH 23 323 29 HOH HOH A . C 3 HOH 24 324 115 HOH HOH A . C 3 HOH 25 325 12 HOH HOH A . C 3 HOH 26 326 108 HOH HOH A . C 3 HOH 27 327 5 HOH HOH A . C 3 HOH 28 328 126 HOH HOH A . C 3 HOH 29 329 135 HOH HOH A . C 3 HOH 30 330 89 HOH HOH A . C 3 HOH 31 331 85 HOH HOH A . C 3 HOH 32 332 194 HOH HOH A . C 3 HOH 33 333 66 HOH HOH A . C 3 HOH 34 334 10 HOH HOH A . C 3 HOH 35 335 104 HOH HOH A . C 3 HOH 36 336 86 HOH HOH A . C 3 HOH 37 337 2 HOH HOH A . C 3 HOH 38 338 125 HOH HOH A . C 3 HOH 39 339 21 HOH HOH A . C 3 HOH 40 340 152 HOH HOH A . C 3 HOH 41 341 11 HOH HOH A . C 3 HOH 42 342 68 HOH HOH A . C 3 HOH 43 343 13 HOH HOH A . C 3 HOH 44 344 54 HOH HOH A . C 3 HOH 45 345 37 HOH HOH A . C 3 HOH 46 346 17 HOH HOH A . C 3 HOH 47 347 186 HOH HOH A . C 3 HOH 48 348 109 HOH HOH A . C 3 HOH 49 349 213 HOH HOH A . C 3 HOH 50 350 116 HOH HOH A . C 3 HOH 51 351 24 HOH HOH A . C 3 HOH 52 352 52 HOH HOH A . C 3 HOH 53 353 132 HOH HOH A . C 3 HOH 54 354 78 HOH HOH A . C 3 HOH 55 355 93 HOH HOH A . C 3 HOH 56 356 79 HOH HOH A . C 3 HOH 57 357 9 HOH HOH A . C 3 HOH 58 358 204 HOH HOH A . C 3 HOH 59 359 127 HOH HOH A . C 3 HOH 60 360 62 HOH HOH A . C 3 HOH 61 361 92 HOH HOH A . C 3 HOH 62 362 16 HOH HOH A . C 3 HOH 63 363 8 HOH HOH A . C 3 HOH 64 364 75 HOH HOH A . C 3 HOH 65 365 136 HOH HOH A . C 3 HOH 66 366 61 HOH HOH A . C 3 HOH 67 367 170 HOH HOH A . C 3 HOH 68 368 77 HOH HOH A . C 3 HOH 69 369 18 HOH HOH A . C 3 HOH 70 370 95 HOH HOH A . C 3 HOH 71 371 73 HOH HOH A . C 3 HOH 72 372 121 HOH HOH A . C 3 HOH 73 373 129 HOH HOH A . C 3 HOH 74 374 26 HOH HOH A . C 3 HOH 75 375 80 HOH HOH A . C 3 HOH 76 376 107 HOH HOH A . C 3 HOH 77 377 32 HOH HOH A . C 3 HOH 78 378 33 HOH HOH A . C 3 HOH 79 379 55 HOH HOH A . C 3 HOH 80 380 174 HOH HOH A . C 3 HOH 81 381 99 HOH HOH A . C 3 HOH 82 382 190 HOH HOH A . C 3 HOH 83 383 47 HOH HOH A . C 3 HOH 84 384 76 HOH HOH A . C 3 HOH 85 385 25 HOH HOH A . C 3 HOH 86 386 142 HOH HOH A . C 3 HOH 87 387 58 HOH HOH A . C 3 HOH 88 388 43 HOH HOH A . C 3 HOH 89 389 28 HOH HOH A . C 3 HOH 90 390 100 HOH HOH A . C 3 HOH 91 391 205 HOH HOH A . C 3 HOH 92 392 20 HOH HOH A . C 3 HOH 93 393 216 HOH HOH A . C 3 HOH 94 394 59 HOH HOH A . C 3 HOH 95 395 130 HOH HOH A . C 3 HOH 96 396 98 HOH HOH A . C 3 HOH 97 397 148 HOH HOH A . C 3 HOH 98 398 65 HOH HOH A . C 3 HOH 99 399 72 HOH HOH A . C 3 HOH 100 400 102 HOH HOH A . C 3 HOH 101 401 182 HOH HOH A . C 3 HOH 102 402 82 HOH HOH A . C 3 HOH 103 403 39 HOH HOH A . C 3 HOH 104 404 94 HOH HOH A . C 3 HOH 105 405 7 HOH HOH A . C 3 HOH 106 406 195 HOH HOH A . C 3 HOH 107 407 74 HOH HOH A . C 3 HOH 108 408 208 HOH HOH A . C 3 HOH 109 409 81 HOH HOH A . C 3 HOH 110 410 44 HOH HOH A . C 3 HOH 111 411 105 HOH HOH A . C 3 HOH 112 412 180 HOH HOH A . C 3 HOH 113 413 149 HOH HOH A . C 3 HOH 114 414 27 HOH HOH A . C 3 HOH 115 415 83 HOH HOH A . C 3 HOH 116 416 90 HOH HOH A . C 3 HOH 117 417 41 HOH HOH A . C 3 HOH 118 418 35 HOH HOH A . C 3 HOH 119 419 64 HOH HOH A . C 3 HOH 120 420 134 HOH HOH A . C 3 HOH 121 421 1 HOH HOH A . C 3 HOH 122 422 157 HOH HOH A . C 3 HOH 123 423 164 HOH HOH A . C 3 HOH 124 424 155 HOH HOH A . C 3 HOH 125 425 138 HOH HOH A . C 3 HOH 126 426 106 HOH HOH A . C 3 HOH 127 427 113 HOH HOH A . C 3 HOH 128 428 192 HOH HOH A . C 3 HOH 129 429 120 HOH HOH A . C 3 HOH 130 430 202 HOH HOH A . C 3 HOH 131 431 143 HOH HOH A . C 3 HOH 132 432 144 HOH HOH A . C 3 HOH 133 433 171 HOH HOH A . C 3 HOH 134 434 215 HOH HOH A . C 3 HOH 135 435 153 HOH HOH A . C 3 HOH 136 436 209 HOH HOH A . C 3 HOH 137 437 141 HOH HOH A . C 3 HOH 138 438 193 HOH HOH A . C 3 HOH 139 439 198 HOH HOH A . C 3 HOH 140 440 50 HOH HOH A . C 3 HOH 141 441 212 HOH HOH A . C 3 HOH 142 442 197 HOH HOH A . C 3 HOH 143 443 211 HOH HOH A . C 3 HOH 144 444 199 HOH HOH A . C 3 HOH 145 445 163 HOH HOH A . C 3 HOH 146 446 30 HOH HOH A . C 3 HOH 147 447 210 HOH HOH A . C 3 HOH 148 448 22 HOH HOH A . C 3 HOH 149 449 165 HOH HOH A . C 3 HOH 150 450 57 HOH HOH A . C 3 HOH 151 451 178 HOH HOH A . C 3 HOH 152 452 203 HOH HOH A . C 3 HOH 153 453 217 HOH HOH A . C 3 HOH 154 454 56 HOH HOH A . C 3 HOH 155 455 124 HOH HOH A . C 3 HOH 156 456 181 HOH HOH A . C 3 HOH 157 457 60 HOH HOH A . C 3 HOH 158 458 147 HOH HOH A . C 3 HOH 159 459 176 HOH HOH A . C 3 HOH 160 460 214 HOH HOH A . C 3 HOH 161 461 71 HOH HOH A . C 3 HOH 162 462 122 HOH HOH A . C 3 HOH 163 463 140 HOH HOH A . C 3 HOH 164 464 175 HOH HOH A . C 3 HOH 165 465 117 HOH HOH A . C 3 HOH 166 466 84 HOH HOH A . C 3 HOH 167 467 191 HOH HOH A . C 3 HOH 168 468 46 HOH HOH A . C 3 HOH 169 469 179 HOH HOH A . C 3 HOH 170 470 188 HOH HOH A . C 3 HOH 171 471 166 HOH HOH A . C 3 HOH 172 472 154 HOH HOH A . C 3 HOH 173 473 207 HOH HOH A . C 3 HOH 174 474 184 HOH HOH A . C 3 HOH 175 475 133 HOH HOH A . C 3 HOH 176 476 183 HOH HOH A . C 3 HOH 177 477 162 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9JAK _cell.details ? _cell.formula_units_Z ? _cell.length_a 36.176 _cell.length_a_esd ? _cell.length_b 42.660 _cell.length_b_esd ? _cell.length_c 101.718 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JAK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 mol/L KBr, 35% PEG2000MME' _exptl_crystal_grow.pdbx_pH_range 6-8 _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-11 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9JAK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.29 _reflns.d_resolution_low 50.86 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 33585 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.29 _reflns_shell.d_res_low 1.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1680 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.584 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9JAK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.29 _refine.ls_d_res_low 34.08 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 33582 _refine.ls_number_reflns_R_free 1631 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 82.38 _refine.ls_percent_reflns_R_free 4.86 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2162 _refine.ls_R_factor_R_free 0.2402 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2149 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.22 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.29 _refine_hist.d_res_low 34.08 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 1570 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1335 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 6.634 ? 208 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.074 ? 214 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 244 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.29 1.33 . . 16 253 8.00 . . . . 0.2941 . . . . . . . . . . . 0.4194 'X-RAY DIFFRACTION' 1.33 1.37 . . 55 1035 33.00 . . . . 0.2896 . . . . . . . . . . . 0.2834 'X-RAY DIFFRACTION' 1.37 1.42 . . 92 1895 60.00 . . . . 0.2652 . . . . . . . . . . . 0.3358 'X-RAY DIFFRACTION' 1.42 1.47 . . 137 2803 87.00 . . . . 0.2490 . . . . . . . . . . . 0.2578 'X-RAY DIFFRACTION' 1.47 1.54 . . 158 3134 99.00 . . . . 0.2266 . . . . . . . . . . . 0.2637 'X-RAY DIFFRACTION' 1.54 1.62 . . 161 3200 100.00 . . . . 0.2130 . . . . . . . . . . . 0.2393 'X-RAY DIFFRACTION' 1.62 1.72 . . 174 3221 100.00 . . . . 0.2273 . . . . . . . . . . . 0.2404 'X-RAY DIFFRACTION' 1.72 1.86 . . 152 3228 100.00 . . . . 0.2211 . . . . . . . . . . . 0.2656 'X-RAY DIFFRACTION' 1.86 2.04 . . 166 3237 100.00 . . . . 0.2019 . . . . . . . . . . . 0.2454 'X-RAY DIFFRACTION' 2.04 2.34 . . 184 3216 100.00 . . . . 0.2021 . . . . . . . . . . . 0.2323 'X-RAY DIFFRACTION' 2.34 2.95 . . 145 3311 100.00 . . . . 0.2229 . . . . . . . . . . . 0.2331 'X-RAY DIFFRACTION' 2.95 34.08 . . 191 3418 99.00 . . . . 0.2053 . . . . . . . . . . . 0.2266 # _struct.entry_id 9JAK _struct.title 'P[28] rotavirus VP8* protein with LNFP-I' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JAK _struct_keywords.text 'rotavirus, VP8*, human milk oligosaccharide, complex, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B3VSM1_9REOV _struct_ref.pdbx_db_accession B3VSM1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLDGPYQPTSFNPPINYWLLLSPTNAGVVMQGTNNTNRWLATLLVEPNVESTTRNYNLFGSSVDITVENTSSDKWKFIDV GKTSLNGSYVQHGTLISSTKLCAAMKHGGNLYTFSGTTPNALPKAYSTTNFDSVNVTTFADFYIISRDNEQKCRQYVNNG LPPIQNTRN ; _struct_ref.pdbx_align_begin 64 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9JAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B3VSM1 _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 232 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 232 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9JAK LEU A 170 ? UNP B3VSM1 ? ? 'expression tag' 233 1 1 9JAK GLU A 171 ? UNP B3VSM1 ? ? 'expression tag' 234 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1440 ? 1 MORE 22 ? 1 'SSA (A^2)' 8660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 149 ? GLY A 160 ? ASN A 212 GLY A 223 1 ? 12 HELX_P HELX_P2 AA2 ASN A 166 ? LEU A 170 ? ASN A 229 LEU A 233 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.396 ? ? covale2 covale both ? B GAL . O3 ? ? ? 1_555 B NAG . C1 ? ? B GAL 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale3 covale both ? B NAG . O3 ? ? ? 1_555 B GAL . C1 ? ? B NAG 3 B GAL 4 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale4 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 4 B FUC 5 1_555 ? ? ? ? ? ? ? 1.403 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 4 A . ? GLY 67 A PRO 5 A ? PRO 68 A 1 4.14 2 THR 118 A . ? THR 181 A PRO 119 A ? PRO 182 A 1 3.94 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 10 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA2 8 9 ? anti-parallel AA2 9 10 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 10 ? PHE A 11 ? SER A 73 PHE A 74 AA1 2 VAL A 136 ? THR A 138 ? VAL A 199 THR A 201 AA1 3 GLY A 27 ? THR A 33 ? GLY A 90 THR A 96 AA1 4 TRP A 39 ? VAL A 45 ? TRP A 102 VAL A 108 AA1 5 TRP A 75 ? LYS A 82 ? TRP A 138 LYS A 145 AA1 6 VAL A 90 ? SER A 97 ? VAL A 153 SER A 160 AA1 7 ASN A 110 ? THR A 117 ? ASN A 173 THR A 180 AA1 8 LEU A 122 ? TYR A 126 ? LEU A 185 TYR A 189 AA2 1 SER A 10 ? PHE A 11 ? SER A 73 PHE A 74 AA2 2 VAL A 136 ? THR A 138 ? VAL A 199 THR A 201 AA2 3 GLY A 27 ? THR A 33 ? GLY A 90 THR A 96 AA2 4 TRP A 39 ? VAL A 45 ? TRP A 102 VAL A 108 AA2 5 TRP A 75 ? LYS A 82 ? TRP A 138 LYS A 145 AA2 6 VAL A 90 ? SER A 97 ? VAL A 153 SER A 160 AA2 7 ASN A 110 ? THR A 117 ? ASN A 173 THR A 180 AA2 8 CYS A 102 ? HIS A 107 ? CYS A 165 HIS A 170 AA2 9 TYR A 17 ? LEU A 21 ? TYR A 80 LEU A 84 AA2 10 PHE A 142 ? SER A 146 ? PHE A 205 SER A 209 AA3 1 VAL A 49 ? LEU A 58 ? VAL A 112 LEU A 121 AA3 2 SER A 61 ? ASN A 69 ? SER A 124 ASN A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 11 ? N PHE A 74 O VAL A 136 ? O VAL A 199 AA1 2 3 O THR A 137 ? O THR A 200 N GLN A 31 ? N GLN A 94 AA1 3 4 N GLY A 32 ? N GLY A 95 O LEU A 40 ? O LEU A 103 AA1 4 5 N ALA A 41 ? N ALA A 104 O VAL A 80 ? O VAL A 143 AA1 5 6 N ASP A 79 ? N ASP A 142 O HIS A 92 ? O HIS A 155 AA1 6 7 N ILE A 96 ? N ILE A 159 O GLY A 116 ? O GLY A 179 AA1 7 8 N THR A 113 ? N THR A 176 O LYS A 124 ? O LYS A 187 AA2 1 2 N PHE A 11 ? N PHE A 74 O VAL A 136 ? O VAL A 199 AA2 2 3 O THR A 137 ? O THR A 200 N GLN A 31 ? N GLN A 94 AA2 3 4 N GLY A 32 ? N GLY A 95 O LEU A 40 ? O LEU A 103 AA2 4 5 N ALA A 41 ? N ALA A 104 O VAL A 80 ? O VAL A 143 AA2 5 6 N ASP A 79 ? N ASP A 142 O HIS A 92 ? O HIS A 155 AA2 6 7 N ILE A 96 ? N ILE A 159 O GLY A 116 ? O GLY A 179 AA2 7 8 O TYR A 112 ? O TYR A 175 N MET A 105 ? N MET A 168 AA2 8 9 O CYS A 102 ? O CYS A 165 N LEU A 21 ? N LEU A 84 AA2 9 10 N TRP A 18 ? N TRP A 81 O ILE A 145 ? O ILE A 208 AA3 1 2 N THR A 52 ? N THR A 115 O VAL A 67 ? O VAL A 130 # _pdbx_entry_details.entry_id 9JAK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 99 ? ? -121.44 -59.41 2 1 ASN A 111 ? ? 62.66 63.70 3 1 ASP A 136 ? ? -143.31 -6.22 4 1 HIS A 155 ? ? -121.46 -114.04 5 1 SER A 190 ? ? -141.90 28.60 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 477 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.74 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUC C1 C N R 112 FUC C2 C N S 113 FUC C3 C N R 114 FUC C4 C N S 115 FUC C5 C N S 116 FUC C6 C N N 117 FUC O1 O N N 118 FUC O2 O N N 119 FUC O3 O N N 120 FUC O4 O N N 121 FUC O5 O N N 122 FUC H1 H N N 123 FUC H2 H N N 124 FUC H3 H N N 125 FUC H4 H N N 126 FUC H5 H N N 127 FUC H61 H N N 128 FUC H62 H N N 129 FUC H63 H N N 130 FUC HO1 H N N 131 FUC HO2 H N N 132 FUC HO3 H N N 133 FUC HO4 H N N 134 GAL C1 C N R 135 GAL C2 C N R 136 GAL C3 C N S 137 GAL C4 C N R 138 GAL C5 C N R 139 GAL C6 C N N 140 GAL O1 O N N 141 GAL O2 O N N 142 GAL O3 O N N 143 GAL O4 O N N 144 GAL O5 O N N 145 GAL O6 O N N 146 GAL H1 H N N 147 GAL H2 H N N 148 GAL H3 H N N 149 GAL H4 H N N 150 GAL H5 H N N 151 GAL H61 H N N 152 GAL H62 H N N 153 GAL HO1 H N N 154 GAL HO2 H N N 155 GAL HO3 H N N 156 GAL HO4 H N N 157 GAL HO6 H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 NAG C1 C N R 321 NAG C2 C N R 322 NAG C3 C N R 323 NAG C4 C N S 324 NAG C5 C N R 325 NAG C6 C N N 326 NAG C7 C N N 327 NAG C8 C N N 328 NAG N2 N N N 329 NAG O1 O N N 330 NAG O3 O N N 331 NAG O4 O N N 332 NAG O5 O N N 333 NAG O6 O N N 334 NAG O7 O N N 335 NAG H1 H N N 336 NAG H2 H N N 337 NAG H3 H N N 338 NAG H4 H N N 339 NAG H5 H N N 340 NAG H61 H N N 341 NAG H62 H N N 342 NAG H81 H N N 343 NAG H82 H N N 344 NAG H83 H N N 345 NAG HN2 H N N 346 NAG HO1 H N N 347 NAG HO3 H N N 348 NAG HO4 H N N 349 NAG HO6 H N N 350 PHE N N N N 351 PHE CA C N S 352 PHE C C N N 353 PHE O O N N 354 PHE CB C N N 355 PHE CG C Y N 356 PHE CD1 C Y N 357 PHE CD2 C Y N 358 PHE CE1 C Y N 359 PHE CE2 C Y N 360 PHE CZ C Y N 361 PHE OXT O N N 362 PHE H H N N 363 PHE H2 H N N 364 PHE HA H N N 365 PHE HB2 H N N 366 PHE HB3 H N N 367 PHE HD1 H N N 368 PHE HD2 H N N 369 PHE HE1 H N N 370 PHE HE2 H N N 371 PHE HZ H N N 372 PHE HXT H N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GAL C1 C2 sing N N 130 GAL C1 O1 sing N N 131 GAL C1 O5 sing N N 132 GAL C1 H1 sing N N 133 GAL C2 C3 sing N N 134 GAL C2 O2 sing N N 135 GAL C2 H2 sing N N 136 GAL C3 C4 sing N N 137 GAL C3 O3 sing N N 138 GAL C3 H3 sing N N 139 GAL C4 C5 sing N N 140 GAL C4 O4 sing N N 141 GAL C4 H4 sing N N 142 GAL C5 C6 sing N N 143 GAL C5 O5 sing N N 144 GAL C5 H5 sing N N 145 GAL C6 O6 sing N N 146 GAL C6 H61 sing N N 147 GAL C6 H62 sing N N 148 GAL O1 HO1 sing N N 149 GAL O2 HO2 sing N N 150 GAL O3 HO3 sing N N 151 GAL O4 HO4 sing N N 152 GAL O6 HO6 sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLU N CA sing N N 173 GLU N H sing N N 174 GLU N H2 sing N N 175 GLU CA C sing N N 176 GLU CA CB sing N N 177 GLU CA HA sing N N 178 GLU C O doub N N 179 GLU C OXT sing N N 180 GLU CB CG sing N N 181 GLU CB HB2 sing N N 182 GLU CB HB3 sing N N 183 GLU CG CD sing N N 184 GLU CG HG2 sing N N 185 GLU CG HG3 sing N N 186 GLU CD OE1 doub N N 187 GLU CD OE2 sing N N 188 GLU OE2 HE2 sing N N 189 GLU OXT HXT sing N N 190 GLY N CA sing N N 191 GLY N H sing N N 192 GLY N H2 sing N N 193 GLY CA C sing N N 194 GLY CA HA2 sing N N 195 GLY CA HA3 sing N N 196 GLY C O doub N N 197 GLY C OXT sing N N 198 GLY OXT HXT sing N N 199 HIS N CA sing N N 200 HIS N H sing N N 201 HIS N H2 sing N N 202 HIS CA C sing N N 203 HIS CA CB sing N N 204 HIS CA HA sing N N 205 HIS C O doub N N 206 HIS C OXT sing N N 207 HIS CB CG sing N N 208 HIS CB HB2 sing N N 209 HIS CB HB3 sing N N 210 HIS CG ND1 sing Y N 211 HIS CG CD2 doub Y N 212 HIS ND1 CE1 doub Y N 213 HIS ND1 HD1 sing N N 214 HIS CD2 NE2 sing Y N 215 HIS CD2 HD2 sing N N 216 HIS CE1 NE2 sing Y N 217 HIS CE1 HE1 sing N N 218 HIS NE2 HE2 sing N N 219 HIS OXT HXT sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 ILE N CA sing N N 223 ILE N H sing N N 224 ILE N H2 sing N N 225 ILE CA C sing N N 226 ILE CA CB sing N N 227 ILE CA HA sing N N 228 ILE C O doub N N 229 ILE C OXT sing N N 230 ILE CB CG1 sing N N 231 ILE CB CG2 sing N N 232 ILE CB HB sing N N 233 ILE CG1 CD1 sing N N 234 ILE CG1 HG12 sing N N 235 ILE CG1 HG13 sing N N 236 ILE CG2 HG21 sing N N 237 ILE CG2 HG22 sing N N 238 ILE CG2 HG23 sing N N 239 ILE CD1 HD11 sing N N 240 ILE CD1 HD12 sing N N 241 ILE CD1 HD13 sing N N 242 ILE OXT HXT sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MET N CA sing N N 289 MET N H sing N N 290 MET N H2 sing N N 291 MET CA C sing N N 292 MET CA CB sing N N 293 MET CA HA sing N N 294 MET C O doub N N 295 MET C OXT sing N N 296 MET CB CG sing N N 297 MET CB HB2 sing N N 298 MET CB HB3 sing N N 299 MET CG SD sing N N 300 MET CG HG2 sing N N 301 MET CG HG3 sing N N 302 MET SD CE sing N N 303 MET CE HE1 sing N N 304 MET CE HE2 sing N N 305 MET CE HE3 sing N N 306 MET OXT HXT sing N N 307 NAG C1 C2 sing N N 308 NAG C1 O1 sing N N 309 NAG C1 O5 sing N N 310 NAG C1 H1 sing N N 311 NAG C2 C3 sing N N 312 NAG C2 N2 sing N N 313 NAG C2 H2 sing N N 314 NAG C3 C4 sing N N 315 NAG C3 O3 sing N N 316 NAG C3 H3 sing N N 317 NAG C4 C5 sing N N 318 NAG C4 O4 sing N N 319 NAG C4 H4 sing N N 320 NAG C5 C6 sing N N 321 NAG C5 O5 sing N N 322 NAG C5 H5 sing N N 323 NAG C6 O6 sing N N 324 NAG C6 H61 sing N N 325 NAG C6 H62 sing N N 326 NAG C7 C8 sing N N 327 NAG C7 N2 sing N N 328 NAG C7 O7 doub N N 329 NAG C8 H81 sing N N 330 NAG C8 H82 sing N N 331 NAG C8 H83 sing N N 332 NAG N2 HN2 sing N N 333 NAG O1 HO1 sing N N 334 NAG O3 HO3 sing N N 335 NAG O4 HO4 sing N N 336 NAG O6 HO6 sing N N 337 PHE N CA sing N N 338 PHE N H sing N N 339 PHE N H2 sing N N 340 PHE CA C sing N N 341 PHE CA CB sing N N 342 PHE CA HA sing N N 343 PHE C O doub N N 344 PHE C OXT sing N N 345 PHE CB CG sing N N 346 PHE CB HB2 sing N N 347 PHE CB HB3 sing N N 348 PHE CG CD1 doub Y N 349 PHE CG CD2 sing Y N 350 PHE CD1 CE1 sing Y N 351 PHE CD1 HD1 sing N N 352 PHE CD2 CE2 doub Y N 353 PHE CD2 HD2 sing N N 354 PHE CE1 CZ doub Y N 355 PHE CE1 HE1 sing N N 356 PHE CE2 CZ sing Y N 357 PHE CE2 HE2 sing N N 358 PHE CZ HZ sing N N 359 PHE OXT HXT sing N N 360 PRO N CA sing N N 361 PRO N CD sing N N 362 PRO N H sing N N 363 PRO CA C sing N N 364 PRO CA CB sing N N 365 PRO CA HA sing N N 366 PRO C O doub N N 367 PRO C OXT sing N N 368 PRO CB CG sing N N 369 PRO CB HB2 sing N N 370 PRO CB HB3 sing N N 371 PRO CG CD sing N N 372 PRO CG HG2 sing N N 373 PRO CG HG3 sing N N 374 PRO CD HD2 sing N N 375 PRO CD HD3 sing N N 376 PRO OXT HXT sing N N 377 SER N CA sing N N 378 SER N H sing N N 379 SER N H2 sing N N 380 SER CA C sing N N 381 SER CA CB sing N N 382 SER CA HA sing N N 383 SER C O doub N N 384 SER C OXT sing N N 385 SER CB OG sing N N 386 SER CB HB2 sing N N 387 SER CB HB3 sing N N 388 SER OG HG sing N N 389 SER OXT HXT sing N N 390 THR N CA sing N N 391 THR N H sing N N 392 THR N H2 sing N N 393 THR CA C sing N N 394 THR CA CB sing N N 395 THR CA HA sing N N 396 THR C O doub N N 397 THR C OXT sing N N 398 THR CB OG1 sing N N 399 THR CB CG2 sing N N 400 THR CB HB sing N N 401 THR OG1 HG1 sing N N 402 THR CG2 HG21 sing N N 403 THR CG2 HG22 sing N N 404 THR CG2 HG23 sing N N 405 THR OXT HXT sing N N 406 TRP N CA sing N N 407 TRP N H sing N N 408 TRP N H2 sing N N 409 TRP CA C sing N N 410 TRP CA CB sing N N 411 TRP CA HA sing N N 412 TRP C O doub N N 413 TRP C OXT sing N N 414 TRP CB CG sing N N 415 TRP CB HB2 sing N N 416 TRP CB HB3 sing N N 417 TRP CG CD1 doub Y N 418 TRP CG CD2 sing Y N 419 TRP CD1 NE1 sing Y N 420 TRP CD1 HD1 sing N N 421 TRP CD2 CE2 doub Y N 422 TRP CD2 CE3 sing Y N 423 TRP NE1 CE2 sing Y N 424 TRP NE1 HE1 sing N N 425 TRP CE2 CZ2 sing Y N 426 TRP CE3 CZ3 doub Y N 427 TRP CE3 HE3 sing N N 428 TRP CZ2 CH2 doub Y N 429 TRP CZ2 HZ2 sing N N 430 TRP CZ3 CH2 sing Y N 431 TRP CZ3 HZ3 sing N N 432 TRP CH2 HH2 sing N N 433 TRP OXT HXT sing N N 434 TYR N CA sing N N 435 TYR N H sing N N 436 TYR N H2 sing N N 437 TYR CA C sing N N 438 TYR CA CB sing N N 439 TYR CA HA sing N N 440 TYR C O doub N N 441 TYR C OXT sing N N 442 TYR CB CG sing N N 443 TYR CB HB2 sing N N 444 TYR CB HB3 sing N N 445 TYR CG CD1 doub Y N 446 TYR CG CD2 sing Y N 447 TYR CD1 CE1 sing Y N 448 TYR CD1 HD1 sing N N 449 TYR CD2 CE2 doub Y N 450 TYR CD2 HD2 sing N N 451 TYR CE1 CZ doub Y N 452 TYR CE1 HE1 sing N N 453 TYR CE2 CZ sing Y N 454 TYR CE2 HE2 sing N N 455 TYR CZ OH sing N N 456 TYR OH HH sing N N 457 TYR OXT HXT sing N N 458 VAL N CA sing N N 459 VAL N H sing N N 460 VAL N H2 sing N N 461 VAL CA C sing N N 462 VAL CA CB sing N N 463 VAL CA HA sing N N 464 VAL C O doub N N 465 VAL C OXT sing N N 466 VAL CB CG1 sing N N 467 VAL CB CG2 sing N N 468 VAL CB HB sing N N 469 VAL CG1 HG11 sing N N 470 VAL CG1 HG12 sing N N 471 VAL CG1 HG13 sing N N 472 VAL CG2 HG21 sing N N 473 VAL CG2 HG22 sing N N 474 VAL CG2 HG23 sing N N 475 VAL OXT HXT sing N N 476 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, China)' China 21934005 1 'National Science Foundation (NSF, China)' China 22074143 2 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 NAG 3 n 2 GAL 4 n 2 FUC 5 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9JAA _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9JAK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.027643 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023441 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009831 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #