data_9JBO # _entry.id 9JBO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JBO pdb_00009jbo 10.2210/pdb9jbo/pdb WWPDB D_1300050787 ? ? EMDB EMD-61321 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2025-01-15 2 'Structure model' 1 1 2025-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.identifier_ORCID' 14 2 'Structure model' '_citation_author.name' 15 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JBO _pdbx_database_status.recvd_initial_deposition_date 2024-08-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of human SOD1 (WT) amyloid filament' _pdbx_database_related.db_id EMD-61321 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 shroh@snu.ac.kr Soung-Hun Roh ? 'principal investigator/group leader' 0000-0003-3851-7200 4 hanc210@snu.ac.kr Nam-Chul Ha ? 'principal investigator/group leader' 0000-0003-4813-748X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Baek, Y.' 1 0000-0001-5119-1829 'Kim, H.' 2 0000-0001-5227-4319 'Lee, D.' 3 ? 'Kim, D.' 4 ? 'Jo, E.' 5 ? 'Roh, S.-H.' 6 0000-0003-3851-7200 'Ha, N.-C.' 7 0000-0003-4813-748X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first e2408582122 _citation.page_last e2408582122 _citation.title 'Structural insights into the role of reduced cysteine residues in SOD1 amyloid filament formation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2408582122 _citation.pdbx_database_id_PubMed 39874287 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baek, Y.' 1 0000-0001-5119-1829 primary 'Kim, H.' 2 ? primary 'Lee, D.' 3 ? primary 'Kim, D.' 4 0009-0000-7960-0401 primary 'Jo, E.' 5 0009-0001-6533-6643 primary 'Roh, S.H.' 6 0000-0003-3851-7200 primary 'Ha, N.C.' 7 0000-0003-4813-748X # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Superoxide dismutase [Cu-Zn]' _entity.formula_weight 16706.570 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec 1.15.1.1 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Superoxide dismutase 1,hSod1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAMDPEFMATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHG GPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIA Q ; _entity_poly.pdbx_seq_one_letter_code_can ;GAMDPEFMATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHG GPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIA Q ; _entity_poly.pdbx_strand_id C,B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 PRO n 1 6 GLU n 1 7 PHE n 1 8 MET n 1 9 ALA n 1 10 THR n 1 11 LYS n 1 12 ALA n 1 13 VAL n 1 14 CYS n 1 15 VAL n 1 16 LEU n 1 17 LYS n 1 18 GLY n 1 19 ASP n 1 20 GLY n 1 21 PRO n 1 22 VAL n 1 23 GLN n 1 24 GLY n 1 25 ILE n 1 26 ILE n 1 27 ASN n 1 28 PHE n 1 29 GLU n 1 30 GLN n 1 31 LYS n 1 32 GLU n 1 33 SER n 1 34 ASN n 1 35 GLY n 1 36 PRO n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 TRP n 1 41 GLY n 1 42 SER n 1 43 ILE n 1 44 LYS n 1 45 GLY n 1 46 LEU n 1 47 THR n 1 48 GLU n 1 49 GLY n 1 50 LEU n 1 51 HIS n 1 52 GLY n 1 53 PHE n 1 54 HIS n 1 55 VAL n 1 56 HIS n 1 57 GLU n 1 58 PHE n 1 59 GLY n 1 60 ASP n 1 61 ASN n 1 62 THR n 1 63 ALA n 1 64 GLY n 1 65 CYS n 1 66 THR n 1 67 SER n 1 68 ALA n 1 69 GLY n 1 70 PRO n 1 71 HIS n 1 72 PHE n 1 73 ASN n 1 74 PRO n 1 75 LEU n 1 76 SER n 1 77 ARG n 1 78 LYS n 1 79 HIS n 1 80 GLY n 1 81 GLY n 1 82 PRO n 1 83 LYS n 1 84 ASP n 1 85 GLU n 1 86 GLU n 1 87 ARG n 1 88 HIS n 1 89 VAL n 1 90 GLY n 1 91 ASP n 1 92 LEU n 1 93 GLY n 1 94 ASN n 1 95 VAL n 1 96 THR n 1 97 ALA n 1 98 ASP n 1 99 LYS n 1 100 ASP n 1 101 GLY n 1 102 VAL n 1 103 ALA n 1 104 ASP n 1 105 VAL n 1 106 SER n 1 107 ILE n 1 108 GLU n 1 109 ASP n 1 110 SER n 1 111 VAL n 1 112 ILE n 1 113 SER n 1 114 LEU n 1 115 SER n 1 116 GLY n 1 117 ASP n 1 118 HIS n 1 119 CYS n 1 120 ILE n 1 121 ILE n 1 122 GLY n 1 123 ARG n 1 124 THR n 1 125 LEU n 1 126 VAL n 1 127 VAL n 1 128 HIS n 1 129 GLU n 1 130 LYS n 1 131 ALA n 1 132 ASP n 1 133 ASP n 1 134 LEU n 1 135 GLY n 1 136 LYS n 1 137 GLY n 1 138 GLY n 1 139 ASN n 1 140 GLU n 1 141 GLU n 1 142 SER n 1 143 THR n 1 144 LYS n 1 145 THR n 1 146 GLY n 1 147 ASN n 1 148 ALA n 1 149 GLY n 1 150 SER n 1 151 ARG n 1 152 LEU n 1 153 ALA n 1 154 CYS n 1 155 GLY n 1 156 VAL n 1 157 ILE n 1 158 GLY n 1 159 ILE n 1 160 ALA n 1 161 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 161 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SOD1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -7 ? ? ? C . n A 1 2 ALA 2 -6 ? ? ? C . n A 1 3 MET 3 -5 ? ? ? C . n A 1 4 ASP 4 -4 ? ? ? C . n A 1 5 PRO 5 -3 ? ? ? C . n A 1 6 GLU 6 -2 ? ? ? C . n A 1 7 PHE 7 -1 ? ? ? C . n A 1 8 MET 8 0 ? ? ? C . n A 1 9 ALA 9 1 1 ALA ALA C . n A 1 10 THR 10 2 2 THR THR C . n A 1 11 LYS 11 3 3 LYS LYS C . n A 1 12 ALA 12 4 4 ALA ALA C . n A 1 13 VAL 13 5 5 VAL VAL C . n A 1 14 CYS 14 6 6 CYS CYS C . n A 1 15 VAL 15 7 7 VAL VAL C . n A 1 16 LEU 16 8 8 LEU LEU C . n A 1 17 LYS 17 9 9 LYS LYS C . n A 1 18 GLY 18 10 10 GLY GLY C . n A 1 19 ASP 19 11 11 ASP ASP C . n A 1 20 GLY 20 12 12 GLY GLY C . n A 1 21 PRO 21 13 13 PRO PRO C . n A 1 22 VAL 22 14 14 VAL VAL C . n A 1 23 GLN 23 15 15 GLN GLN C . n A 1 24 GLY 24 16 16 GLY GLY C . n A 1 25 ILE 25 17 17 ILE ILE C . n A 1 26 ILE 26 18 18 ILE ILE C . n A 1 27 ASN 27 19 19 ASN ASN C . n A 1 28 PHE 28 20 20 PHE PHE C . n A 1 29 GLU 29 21 21 GLU GLU C . n A 1 30 GLN 30 22 22 GLN GLN C . n A 1 31 LYS 31 23 23 LYS LYS C . n A 1 32 GLU 32 24 24 GLU GLU C . n A 1 33 SER 33 25 25 SER SER C . n A 1 34 ASN 34 26 26 ASN ASN C . n A 1 35 GLY 35 27 27 GLY GLY C . n A 1 36 PRO 36 28 28 PRO PRO C . n A 1 37 VAL 37 29 29 VAL VAL C . n A 1 38 LYS 38 30 30 LYS LYS C . n A 1 39 VAL 39 31 31 VAL VAL C . n A 1 40 TRP 40 32 32 TRP TRP C . n A 1 41 GLY 41 33 33 GLY GLY C . n A 1 42 SER 42 34 34 SER SER C . n A 1 43 ILE 43 35 35 ILE ILE C . n A 1 44 LYS 44 36 36 LYS LYS C . n A 1 45 GLY 45 37 37 GLY GLY C . n A 1 46 LEU 46 38 38 LEU LEU C . n A 1 47 THR 47 39 39 THR THR C . n A 1 48 GLU 48 40 40 GLU GLU C . n A 1 49 GLY 49 41 41 GLY GLY C . n A 1 50 LEU 50 42 42 LEU LEU C . n A 1 51 HIS 51 43 43 HIS HIS C . n A 1 52 GLY 52 44 44 GLY GLY C . n A 1 53 PHE 53 45 45 PHE PHE C . n A 1 54 HIS 54 46 ? ? ? C . n A 1 55 VAL 55 47 ? ? ? C . n A 1 56 HIS 56 48 ? ? ? C . n A 1 57 GLU 57 49 ? ? ? C . n A 1 58 PHE 58 50 ? ? ? C . n A 1 59 GLY 59 51 ? ? ? C . n A 1 60 ASP 60 52 ? ? ? C . n A 1 61 ASN 61 53 ? ? ? C . n A 1 62 THR 62 54 ? ? ? C . n A 1 63 ALA 63 55 ? ? ? C . n A 1 64 GLY 64 56 ? ? ? C . n A 1 65 CYS 65 57 ? ? ? C . n A 1 66 THR 66 58 ? ? ? C . n A 1 67 SER 67 59 ? ? ? C . n A 1 68 ALA 68 60 ? ? ? C . n A 1 69 GLY 69 61 ? ? ? C . n A 1 70 PRO 70 62 ? ? ? C . n A 1 71 HIS 71 63 ? ? ? C . n A 1 72 PHE 72 64 ? ? ? C . n A 1 73 ASN 73 65 ? ? ? C . n A 1 74 PRO 74 66 ? ? ? C . n A 1 75 LEU 75 67 ? ? ? C . n A 1 76 SER 76 68 ? ? ? C . n A 1 77 ARG 77 69 ? ? ? C . n A 1 78 LYS 78 70 ? ? ? C . n A 1 79 HIS 79 71 ? ? ? C . n A 1 80 GLY 80 72 ? ? ? C . n A 1 81 GLY 81 73 ? ? ? C . n A 1 82 PRO 82 74 ? ? ? C . n A 1 83 LYS 83 75 ? ? ? C . n A 1 84 ASP 84 76 ? ? ? C . n A 1 85 GLU 85 77 ? ? ? C . n A 1 86 GLU 86 78 ? ? ? C . n A 1 87 ARG 87 79 ? ? ? C . n A 1 88 HIS 88 80 ? ? ? C . n A 1 89 VAL 89 81 81 VAL VAL C . n A 1 90 GLY 90 82 82 GLY GLY C . n A 1 91 ASP 91 83 83 ASP ASP C . n A 1 92 LEU 92 84 84 LEU LEU C . n A 1 93 GLY 93 85 85 GLY GLY C . n A 1 94 ASN 94 86 86 ASN ASN C . n A 1 95 VAL 95 87 87 VAL VAL C . n A 1 96 THR 96 88 88 THR THR C . n A 1 97 ALA 97 89 89 ALA ALA C . n A 1 98 ASP 98 90 90 ASP ASP C . n A 1 99 LYS 99 91 91 LYS LYS C . n A 1 100 ASP 100 92 92 ASP ASP C . n A 1 101 GLY 101 93 93 GLY GLY C . n A 1 102 VAL 102 94 94 VAL VAL C . n A 1 103 ALA 103 95 95 ALA ALA C . n A 1 104 ASP 104 96 96 ASP ASP C . n A 1 105 VAL 105 97 97 VAL VAL C . n A 1 106 SER 106 98 98 SER SER C . n A 1 107 ILE 107 99 99 ILE ILE C . n A 1 108 GLU 108 100 100 GLU GLU C . n A 1 109 ASP 109 101 101 ASP ASP C . n A 1 110 SER 110 102 102 SER SER C . n A 1 111 VAL 111 103 103 VAL VAL C . n A 1 112 ILE 112 104 104 ILE ILE C . n A 1 113 SER 113 105 105 SER SER C . n A 1 114 LEU 114 106 106 LEU LEU C . n A 1 115 SER 115 107 107 SER SER C . n A 1 116 GLY 116 108 108 GLY GLY C . n A 1 117 ASP 117 109 109 ASP ASP C . n A 1 118 HIS 118 110 110 HIS HIS C . n A 1 119 CYS 119 111 111 CYS CYS C . n A 1 120 ILE 120 112 112 ILE ILE C . n A 1 121 ILE 121 113 113 ILE ILE C . n A 1 122 GLY 122 114 114 GLY GLY C . n A 1 123 ARG 123 115 115 ARG ARG C . n A 1 124 THR 124 116 116 THR THR C . n A 1 125 LEU 125 117 117 LEU LEU C . n A 1 126 VAL 126 118 118 VAL VAL C . n A 1 127 VAL 127 119 119 VAL VAL C . n A 1 128 HIS 128 120 120 HIS HIS C . n A 1 129 GLU 129 121 121 GLU GLU C . n A 1 130 LYS 130 122 ? ? ? C . n A 1 131 ALA 131 123 ? ? ? C . n A 1 132 ASP 132 124 ? ? ? C . n A 1 133 ASP 133 125 ? ? ? C . n A 1 134 LEU 134 126 ? ? ? C . n A 1 135 GLY 135 127 ? ? ? C . n A 1 136 LYS 136 128 ? ? ? C . n A 1 137 GLY 137 129 ? ? ? C . n A 1 138 GLY 138 130 ? ? ? C . n A 1 139 ASN 139 131 ? ? ? C . n A 1 140 GLU 140 132 ? ? ? C . n A 1 141 GLU 141 133 ? ? ? C . n A 1 142 SER 142 134 ? ? ? C . n A 1 143 THR 143 135 ? ? ? C . n A 1 144 LYS 144 136 ? ? ? C . n A 1 145 THR 145 137 ? ? ? C . n A 1 146 GLY 146 138 ? ? ? C . n A 1 147 ASN 147 139 ? ? ? C . n A 1 148 ALA 148 140 ? ? ? C . n A 1 149 GLY 149 141 ? ? ? C . n A 1 150 SER 150 142 ? ? ? C . n A 1 151 ARG 151 143 ? ? ? C . n A 1 152 LEU 152 144 ? ? ? C . n A 1 153 ALA 153 145 ? ? ? C . n A 1 154 CYS 154 146 ? ? ? C . n A 1 155 GLY 155 147 ? ? ? C . n A 1 156 VAL 156 148 ? ? ? C . n A 1 157 ILE 157 149 ? ? ? C . n A 1 158 GLY 158 150 ? ? ? C . n A 1 159 ILE 159 151 ? ? ? C . n A 1 160 ALA 160 152 ? ? ? C . n A 1 161 GLN 161 153 ? ? ? C . n B 1 1 GLY 1 -7 ? ? ? B . n B 1 2 ALA 2 -6 ? ? ? B . n B 1 3 MET 3 -5 ? ? ? B . n B 1 4 ASP 4 -4 ? ? ? B . n B 1 5 PRO 5 -3 ? ? ? B . n B 1 6 GLU 6 -2 ? ? ? B . n B 1 7 PHE 7 -1 ? ? ? B . n B 1 8 MET 8 0 ? ? ? B . n B 1 9 ALA 9 1 1 ALA ALA B . n B 1 10 THR 10 2 2 THR THR B . n B 1 11 LYS 11 3 3 LYS LYS B . n B 1 12 ALA 12 4 4 ALA ALA B . n B 1 13 VAL 13 5 5 VAL VAL B . n B 1 14 CYS 14 6 6 CYS CYS B . n B 1 15 VAL 15 7 7 VAL VAL B . n B 1 16 LEU 16 8 8 LEU LEU B . n B 1 17 LYS 17 9 9 LYS LYS B . n B 1 18 GLY 18 10 10 GLY GLY B . n B 1 19 ASP 19 11 11 ASP ASP B . n B 1 20 GLY 20 12 12 GLY GLY B . n B 1 21 PRO 21 13 13 PRO PRO B . n B 1 22 VAL 22 14 14 VAL VAL B . n B 1 23 GLN 23 15 15 GLN GLN B . n B 1 24 GLY 24 16 16 GLY GLY B . n B 1 25 ILE 25 17 17 ILE ILE B . n B 1 26 ILE 26 18 18 ILE ILE B . n B 1 27 ASN 27 19 19 ASN ASN B . n B 1 28 PHE 28 20 20 PHE PHE B . n B 1 29 GLU 29 21 21 GLU GLU B . n B 1 30 GLN 30 22 22 GLN GLN B . n B 1 31 LYS 31 23 23 LYS LYS B . n B 1 32 GLU 32 24 24 GLU GLU B . n B 1 33 SER 33 25 25 SER SER B . n B 1 34 ASN 34 26 26 ASN ASN B . n B 1 35 GLY 35 27 27 GLY GLY B . n B 1 36 PRO 36 28 28 PRO PRO B . n B 1 37 VAL 37 29 29 VAL VAL B . n B 1 38 LYS 38 30 30 LYS LYS B . n B 1 39 VAL 39 31 31 VAL VAL B . n B 1 40 TRP 40 32 32 TRP TRP B . n B 1 41 GLY 41 33 33 GLY GLY B . n B 1 42 SER 42 34 34 SER SER B . n B 1 43 ILE 43 35 35 ILE ILE B . n B 1 44 LYS 44 36 36 LYS LYS B . n B 1 45 GLY 45 37 37 GLY GLY B . n B 1 46 LEU 46 38 38 LEU LEU B . n B 1 47 THR 47 39 39 THR THR B . n B 1 48 GLU 48 40 40 GLU GLU B . n B 1 49 GLY 49 41 41 GLY GLY B . n B 1 50 LEU 50 42 42 LEU LEU B . n B 1 51 HIS 51 43 43 HIS HIS B . n B 1 52 GLY 52 44 44 GLY GLY B . n B 1 53 PHE 53 45 45 PHE PHE B . n B 1 54 HIS 54 46 ? ? ? B . n B 1 55 VAL 55 47 ? ? ? B . n B 1 56 HIS 56 48 ? ? ? B . n B 1 57 GLU 57 49 ? ? ? B . n B 1 58 PHE 58 50 ? ? ? B . n B 1 59 GLY 59 51 ? ? ? B . n B 1 60 ASP 60 52 ? ? ? B . n B 1 61 ASN 61 53 ? ? ? B . n B 1 62 THR 62 54 ? ? ? B . n B 1 63 ALA 63 55 ? ? ? B . n B 1 64 GLY 64 56 ? ? ? B . n B 1 65 CYS 65 57 ? ? ? B . n B 1 66 THR 66 58 ? ? ? B . n B 1 67 SER 67 59 ? ? ? B . n B 1 68 ALA 68 60 ? ? ? B . n B 1 69 GLY 69 61 ? ? ? B . n B 1 70 PRO 70 62 ? ? ? B . n B 1 71 HIS 71 63 ? ? ? B . n B 1 72 PHE 72 64 ? ? ? B . n B 1 73 ASN 73 65 ? ? ? B . n B 1 74 PRO 74 66 ? ? ? B . n B 1 75 LEU 75 67 ? ? ? B . n B 1 76 SER 76 68 ? ? ? B . n B 1 77 ARG 77 69 ? ? ? B . n B 1 78 LYS 78 70 ? ? ? B . n B 1 79 HIS 79 71 ? ? ? B . n B 1 80 GLY 80 72 ? ? ? B . n B 1 81 GLY 81 73 ? ? ? B . n B 1 82 PRO 82 74 ? ? ? B . n B 1 83 LYS 83 75 ? ? ? B . n B 1 84 ASP 84 76 ? ? ? B . n B 1 85 GLU 85 77 ? ? ? B . n B 1 86 GLU 86 78 ? ? ? B . n B 1 87 ARG 87 79 ? ? ? B . n B 1 88 HIS 88 80 ? ? ? B . n B 1 89 VAL 89 81 81 VAL VAL B . n B 1 90 GLY 90 82 82 GLY GLY B . n B 1 91 ASP 91 83 83 ASP ASP B . n B 1 92 LEU 92 84 84 LEU LEU B . n B 1 93 GLY 93 85 85 GLY GLY B . n B 1 94 ASN 94 86 86 ASN ASN B . n B 1 95 VAL 95 87 87 VAL VAL B . n B 1 96 THR 96 88 88 THR THR B . n B 1 97 ALA 97 89 89 ALA ALA B . n B 1 98 ASP 98 90 90 ASP ASP B . n B 1 99 LYS 99 91 91 LYS LYS B . n B 1 100 ASP 100 92 92 ASP ASP B . n B 1 101 GLY 101 93 93 GLY GLY B . n B 1 102 VAL 102 94 94 VAL VAL B . n B 1 103 ALA 103 95 95 ALA ALA B . n B 1 104 ASP 104 96 96 ASP ASP B . n B 1 105 VAL 105 97 97 VAL VAL B . n B 1 106 SER 106 98 98 SER SER B . n B 1 107 ILE 107 99 99 ILE ILE B . n B 1 108 GLU 108 100 100 GLU GLU B . n B 1 109 ASP 109 101 101 ASP ASP B . n B 1 110 SER 110 102 102 SER SER B . n B 1 111 VAL 111 103 103 VAL VAL B . n B 1 112 ILE 112 104 104 ILE ILE B . n B 1 113 SER 113 105 105 SER SER B . n B 1 114 LEU 114 106 106 LEU LEU B . n B 1 115 SER 115 107 107 SER SER B . n B 1 116 GLY 116 108 108 GLY GLY B . n B 1 117 ASP 117 109 109 ASP ASP B . n B 1 118 HIS 118 110 110 HIS HIS B . n B 1 119 CYS 119 111 111 CYS CYS B . n B 1 120 ILE 120 112 112 ILE ILE B . n B 1 121 ILE 121 113 113 ILE ILE B . n B 1 122 GLY 122 114 114 GLY GLY B . n B 1 123 ARG 123 115 115 ARG ARG B . n B 1 124 THR 124 116 116 THR THR B . n B 1 125 LEU 125 117 117 LEU LEU B . n B 1 126 VAL 126 118 118 VAL VAL B . n B 1 127 VAL 127 119 119 VAL VAL B . n B 1 128 HIS 128 120 120 HIS HIS B . n B 1 129 GLU 129 121 121 GLU GLU B . n B 1 130 LYS 130 122 ? ? ? B . n B 1 131 ALA 131 123 ? ? ? B . n B 1 132 ASP 132 124 ? ? ? B . n B 1 133 ASP 133 125 ? ? ? B . n B 1 134 LEU 134 126 ? ? ? B . n B 1 135 GLY 135 127 ? ? ? B . n B 1 136 LYS 136 128 ? ? ? B . n B 1 137 GLY 137 129 ? ? ? B . n B 1 138 GLY 138 130 ? ? ? B . n B 1 139 ASN 139 131 ? ? ? B . n B 1 140 GLU 140 132 ? ? ? B . n B 1 141 GLU 141 133 ? ? ? B . n B 1 142 SER 142 134 ? ? ? B . n B 1 143 THR 143 135 ? ? ? B . n B 1 144 LYS 144 136 ? ? ? B . n B 1 145 THR 145 137 ? ? ? B . n B 1 146 GLY 146 138 ? ? ? B . n B 1 147 ASN 147 139 ? ? ? B . n B 1 148 ALA 148 140 ? ? ? B . n B 1 149 GLY 149 141 ? ? ? B . n B 1 150 SER 150 142 ? ? ? B . n B 1 151 ARG 151 143 ? ? ? B . n B 1 152 LEU 152 144 ? ? ? B . n B 1 153 ALA 153 145 ? ? ? B . n B 1 154 CYS 154 146 ? ? ? B . n B 1 155 GLY 155 147 ? ? ? B . n B 1 156 VAL 156 148 ? ? ? B . n B 1 157 ILE 157 149 ? ? ? B . n B 1 158 GLY 158 150 ? ? ? B . n B 1 159 ILE 159 151 ? ? ? B . n B 1 160 ALA 160 152 ? ? ? B . n B 1 161 GLN 161 153 ? ? ? B . n C 1 1 GLY 1 -7 ? ? ? A . n C 1 2 ALA 2 -6 ? ? ? A . n C 1 3 MET 3 -5 ? ? ? A . n C 1 4 ASP 4 -4 ? ? ? A . n C 1 5 PRO 5 -3 ? ? ? A . n C 1 6 GLU 6 -2 ? ? ? A . n C 1 7 PHE 7 -1 ? ? ? A . n C 1 8 MET 8 0 ? ? ? A . n C 1 9 ALA 9 1 1 ALA ALA A . n C 1 10 THR 10 2 2 THR THR A . n C 1 11 LYS 11 3 3 LYS LYS A . n C 1 12 ALA 12 4 4 ALA ALA A . n C 1 13 VAL 13 5 5 VAL VAL A . n C 1 14 CYS 14 6 6 CYS CYS A . n C 1 15 VAL 15 7 7 VAL VAL A . n C 1 16 LEU 16 8 8 LEU LEU A . n C 1 17 LYS 17 9 9 LYS LYS A . n C 1 18 GLY 18 10 10 GLY GLY A . n C 1 19 ASP 19 11 11 ASP ASP A . n C 1 20 GLY 20 12 12 GLY GLY A . n C 1 21 PRO 21 13 13 PRO PRO A . n C 1 22 VAL 22 14 14 VAL VAL A . n C 1 23 GLN 23 15 15 GLN GLN A . n C 1 24 GLY 24 16 16 GLY GLY A . n C 1 25 ILE 25 17 17 ILE ILE A . n C 1 26 ILE 26 18 18 ILE ILE A . n C 1 27 ASN 27 19 19 ASN ASN A . n C 1 28 PHE 28 20 20 PHE PHE A . n C 1 29 GLU 29 21 21 GLU GLU A . n C 1 30 GLN 30 22 22 GLN GLN A . n C 1 31 LYS 31 23 23 LYS LYS A . n C 1 32 GLU 32 24 24 GLU GLU A . n C 1 33 SER 33 25 25 SER SER A . n C 1 34 ASN 34 26 26 ASN ASN A . n C 1 35 GLY 35 27 27 GLY GLY A . n C 1 36 PRO 36 28 28 PRO PRO A . n C 1 37 VAL 37 29 29 VAL VAL A . n C 1 38 LYS 38 30 30 LYS LYS A . n C 1 39 VAL 39 31 31 VAL VAL A . n C 1 40 TRP 40 32 32 TRP TRP A . n C 1 41 GLY 41 33 33 GLY GLY A . n C 1 42 SER 42 34 34 SER SER A . n C 1 43 ILE 43 35 35 ILE ILE A . n C 1 44 LYS 44 36 36 LYS LYS A . n C 1 45 GLY 45 37 37 GLY GLY A . n C 1 46 LEU 46 38 38 LEU LEU A . n C 1 47 THR 47 39 39 THR THR A . n C 1 48 GLU 48 40 40 GLU GLU A . n C 1 49 GLY 49 41 41 GLY GLY A . n C 1 50 LEU 50 42 42 LEU LEU A . n C 1 51 HIS 51 43 43 HIS HIS A . n C 1 52 GLY 52 44 44 GLY GLY A . n C 1 53 PHE 53 45 45 PHE PHE A . n C 1 54 HIS 54 46 ? ? ? A . n C 1 55 VAL 55 47 ? ? ? A . n C 1 56 HIS 56 48 ? ? ? A . n C 1 57 GLU 57 49 ? ? ? A . n C 1 58 PHE 58 50 ? ? ? A . n C 1 59 GLY 59 51 ? ? ? A . n C 1 60 ASP 60 52 ? ? ? A . n C 1 61 ASN 61 53 ? ? ? A . n C 1 62 THR 62 54 ? ? ? A . n C 1 63 ALA 63 55 ? ? ? A . n C 1 64 GLY 64 56 ? ? ? A . n C 1 65 CYS 65 57 ? ? ? A . n C 1 66 THR 66 58 ? ? ? A . n C 1 67 SER 67 59 ? ? ? A . n C 1 68 ALA 68 60 ? ? ? A . n C 1 69 GLY 69 61 ? ? ? A . n C 1 70 PRO 70 62 ? ? ? A . n C 1 71 HIS 71 63 ? ? ? A . n C 1 72 PHE 72 64 ? ? ? A . n C 1 73 ASN 73 65 ? ? ? A . n C 1 74 PRO 74 66 ? ? ? A . n C 1 75 LEU 75 67 ? ? ? A . n C 1 76 SER 76 68 ? ? ? A . n C 1 77 ARG 77 69 ? ? ? A . n C 1 78 LYS 78 70 ? ? ? A . n C 1 79 HIS 79 71 ? ? ? A . n C 1 80 GLY 80 72 ? ? ? A . n C 1 81 GLY 81 73 ? ? ? A . n C 1 82 PRO 82 74 ? ? ? A . n C 1 83 LYS 83 75 ? ? ? A . n C 1 84 ASP 84 76 ? ? ? A . n C 1 85 GLU 85 77 ? ? ? A . n C 1 86 GLU 86 78 ? ? ? A . n C 1 87 ARG 87 79 ? ? ? A . n C 1 88 HIS 88 80 ? ? ? A . n C 1 89 VAL 89 81 81 VAL VAL A . n C 1 90 GLY 90 82 82 GLY GLY A . n C 1 91 ASP 91 83 83 ASP ASP A . n C 1 92 LEU 92 84 84 LEU LEU A . n C 1 93 GLY 93 85 85 GLY GLY A . n C 1 94 ASN 94 86 86 ASN ASN A . n C 1 95 VAL 95 87 87 VAL VAL A . n C 1 96 THR 96 88 88 THR THR A . n C 1 97 ALA 97 89 89 ALA ALA A . n C 1 98 ASP 98 90 90 ASP ASP A . n C 1 99 LYS 99 91 91 LYS LYS A . n C 1 100 ASP 100 92 92 ASP ASP A . n C 1 101 GLY 101 93 93 GLY GLY A . n C 1 102 VAL 102 94 94 VAL VAL A . n C 1 103 ALA 103 95 95 ALA ALA A . n C 1 104 ASP 104 96 96 ASP ASP A . n C 1 105 VAL 105 97 97 VAL VAL A . n C 1 106 SER 106 98 98 SER SER A . n C 1 107 ILE 107 99 99 ILE ILE A . n C 1 108 GLU 108 100 100 GLU GLU A . n C 1 109 ASP 109 101 101 ASP ASP A . n C 1 110 SER 110 102 102 SER SER A . n C 1 111 VAL 111 103 103 VAL VAL A . n C 1 112 ILE 112 104 104 ILE ILE A . n C 1 113 SER 113 105 105 SER SER A . n C 1 114 LEU 114 106 106 LEU LEU A . n C 1 115 SER 115 107 107 SER SER A . n C 1 116 GLY 116 108 108 GLY GLY A . n C 1 117 ASP 117 109 109 ASP ASP A . n C 1 118 HIS 118 110 110 HIS HIS A . n C 1 119 CYS 119 111 111 CYS CYS A . n C 1 120 ILE 120 112 112 ILE ILE A . n C 1 121 ILE 121 113 113 ILE ILE A . n C 1 122 GLY 122 114 114 GLY GLY A . n C 1 123 ARG 123 115 115 ARG ARG A . n C 1 124 THR 124 116 116 THR THR A . n C 1 125 LEU 125 117 117 LEU LEU A . n C 1 126 VAL 126 118 118 VAL VAL A . n C 1 127 VAL 127 119 119 VAL VAL A . n C 1 128 HIS 128 120 120 HIS HIS A . n C 1 129 GLU 129 121 121 GLU GLU A . n C 1 130 LYS 130 122 ? ? ? A . n C 1 131 ALA 131 123 ? ? ? A . n C 1 132 ASP 132 124 ? ? ? A . n C 1 133 ASP 133 125 ? ? ? A . n C 1 134 LEU 134 126 ? ? ? A . n C 1 135 GLY 135 127 ? ? ? A . n C 1 136 LYS 136 128 ? ? ? A . n C 1 137 GLY 137 129 ? ? ? A . n C 1 138 GLY 138 130 ? ? ? A . n C 1 139 ASN 139 131 ? ? ? A . n C 1 140 GLU 140 132 ? ? ? A . n C 1 141 GLU 141 133 ? ? ? A . n C 1 142 SER 142 134 ? ? ? A . n C 1 143 THR 143 135 ? ? ? A . n C 1 144 LYS 144 136 ? ? ? A . n C 1 145 THR 145 137 ? ? ? A . n C 1 146 GLY 146 138 ? ? ? A . n C 1 147 ASN 147 139 ? ? ? A . n C 1 148 ALA 148 140 ? ? ? A . n C 1 149 GLY 149 141 ? ? ? A . n C 1 150 SER 150 142 ? ? ? A . n C 1 151 ARG 151 143 ? ? ? A . n C 1 152 LEU 152 144 ? ? ? A . n C 1 153 ALA 153 145 ? ? ? A . n C 1 154 CYS 154 146 ? ? ? A . n C 1 155 GLY 155 147 ? ? ? A . n C 1 156 VAL 156 148 ? ? ? A . n C 1 157 ILE 157 149 ? ? ? A . n C 1 158 GLY 158 150 ? ? ? A . n C 1 159 ILE 159 151 ? ? ? A . n C 1 160 ALA 160 152 ? ? ? A . n C 1 161 GLN 161 153 ? ? ? A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9JBO _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JBO _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9JBO _struct.title 'Cryo-EM structure of human SOD1 (WT) amyloid filament' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JBO _struct_keywords.text 'amyloid, filament, superoxide dismutase 1, amyotrophic lateral sclerosis, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_HUMAN _struct_ref.pdbx_db_accession P00441 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEER HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JBO C 8 ? 161 ? P00441 1 ? 154 ? 0 153 2 1 9JBO B 8 ? 161 ? P00441 1 ? 154 ? 0 153 3 1 9JBO A 8 ? 161 ? P00441 1 ? 154 ? 0 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9JBO GLY C 1 ? UNP P00441 ? ? 'expression tag' -7 1 1 9JBO ALA C 2 ? UNP P00441 ? ? 'expression tag' -6 2 1 9JBO MET C 3 ? UNP P00441 ? ? 'expression tag' -5 3 1 9JBO ASP C 4 ? UNP P00441 ? ? 'expression tag' -4 4 1 9JBO PRO C 5 ? UNP P00441 ? ? 'expression tag' -3 5 1 9JBO GLU C 6 ? UNP P00441 ? ? 'expression tag' -2 6 1 9JBO PHE C 7 ? UNP P00441 ? ? 'expression tag' -1 7 2 9JBO GLY B 1 ? UNP P00441 ? ? 'expression tag' -7 8 2 9JBO ALA B 2 ? UNP P00441 ? ? 'expression tag' -6 9 2 9JBO MET B 3 ? UNP P00441 ? ? 'expression tag' -5 10 2 9JBO ASP B 4 ? UNP P00441 ? ? 'expression tag' -4 11 2 9JBO PRO B 5 ? UNP P00441 ? ? 'expression tag' -3 12 2 9JBO GLU B 6 ? UNP P00441 ? ? 'expression tag' -2 13 2 9JBO PHE B 7 ? UNP P00441 ? ? 'expression tag' -1 14 3 9JBO GLY A 1 ? UNP P00441 ? ? 'expression tag' -7 15 3 9JBO ALA A 2 ? UNP P00441 ? ? 'expression tag' -6 16 3 9JBO MET A 3 ? UNP P00441 ? ? 'expression tag' -5 17 3 9JBO ASP A 4 ? UNP P00441 ? ? 'expression tag' -4 18 3 9JBO PRO A 5 ? UNP P00441 ? ? 'expression tag' -3 19 3 9JBO GLU A 6 ? UNP P00441 ? ? 'expression tag' -2 20 3 9JBO PHE A 7 ? UNP P00441 ? ? 'expression tag' -1 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'filaments were observed in EM images' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 15 ? GLY A 18 ? VAL C 7 GLY C 10 AA1 2 VAL B 15 ? GLY B 18 ? VAL B 7 GLY B 10 AA1 3 VAL C 15 ? GLY C 18 ? VAL A 7 GLY A 10 AA2 1 VAL A 22 ? LYS A 31 ? VAL C 14 LYS C 23 AA2 2 VAL B 22 ? LYS B 31 ? VAL B 14 LYS B 23 AA2 3 VAL C 22 ? LYS C 31 ? VAL A 14 LYS A 23 AA3 1 VAL A 37 ? VAL A 39 ? VAL C 29 VAL C 31 AA3 2 VAL B 37 ? VAL B 39 ? VAL B 29 VAL B 31 AA3 3 VAL C 37 ? VAL C 39 ? VAL A 29 VAL A 31 AA4 1 ILE A 43 ? THR A 47 ? ILE C 35 THR C 39 AA4 2 ILE B 43 ? THR B 47 ? ILE B 35 THR B 39 AA4 3 ILE C 43 ? THR C 47 ? ILE A 35 THR A 39 AA5 1 VAL A 95 ? THR A 96 ? VAL C 87 THR C 88 AA5 2 VAL B 95 ? THR B 96 ? VAL B 87 THR B 88 AA5 3 VAL C 95 ? THR C 96 ? VAL A 87 THR A 88 AA6 1 VAL A 105 ? GLU A 108 ? VAL C 97 GLU C 100 AA6 2 VAL B 105 ? GLU B 108 ? VAL B 97 GLU B 100 AA6 3 VAL C 105 ? GLU C 108 ? VAL A 97 GLU A 100 AA7 1 VAL A 111 ? SER A 113 ? VAL C 103 SER C 105 AA7 2 VAL B 111 ? SER B 113 ? VAL B 103 SER B 105 AA7 3 VAL C 111 ? SER C 113 ? VAL A 103 SER A 105 AA8 1 CYS A 119 ? ILE A 121 ? CYS C 111 ILE C 113 AA8 2 CYS B 119 ? ILE B 121 ? CYS B 111 ILE B 113 AA8 3 CYS C 119 ? ILE C 121 ? CYS A 111 ILE A 113 AA9 1 VAL A 126 ? HIS A 128 ? VAL C 118 HIS C 120 AA9 2 VAL B 126 ? HIS B 128 ? VAL B 118 HIS B 120 AA9 3 VAL C 126 ? HIS C 128 ? VAL A 118 HIS A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 18 ? N GLY C 10 O LYS B 17 ? O LYS B 9 AA1 2 3 N GLY B 18 ? N GLY B 10 O LYS C 17 ? O LYS A 9 AA2 1 2 N ILE A 25 ? N ILE C 17 O GLY B 24 ? O GLY B 16 AA2 2 3 N ILE B 25 ? N ILE B 17 O GLY C 24 ? O GLY A 16 AA3 1 2 N LYS A 38 ? N LYS C 30 O VAL B 39 ? O VAL B 31 AA3 2 3 N LYS B 38 ? N LYS B 30 O VAL C 39 ? O VAL A 31 AA4 1 2 N LYS A 44 ? N LYS C 36 O GLY B 45 ? O GLY B 37 AA4 2 3 N LYS B 44 ? N LYS B 36 O GLY C 45 ? O GLY A 37 AA5 1 2 N VAL A 95 ? N VAL C 87 O THR B 96 ? O THR B 88 AA5 2 3 N VAL B 95 ? N VAL B 87 O THR C 96 ? O THR A 88 AA6 1 2 N SER A 106 ? N SER C 98 O ILE B 107 ? O ILE B 99 AA6 2 3 N SER B 106 ? N SER B 98 O ILE C 107 ? O ILE A 99 AA7 1 2 N VAL A 111 ? N VAL C 103 O ILE B 112 ? O ILE B 104 AA7 2 3 N VAL B 111 ? N VAL B 103 O ILE C 112 ? O ILE A 104 AA8 1 2 N ILE A 120 ? N ILE C 112 O ILE B 121 ? O ILE B 113 AA8 2 3 N ILE B 120 ? N ILE B 112 O ILE C 121 ? O ILE A 113 AA9 1 2 N HIS A 128 ? N HIS C 120 O VAL B 127 ? O VAL B 119 AA9 2 3 N HIS B 128 ? N HIS B 120 O VAL C 127 ? O VAL A 119 # _pdbx_entry_details.entry_id 9JBO _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR C 2 ? ? 50.06 -100.42 2 1 CYS C 6 ? ? 61.51 63.83 3 1 ALA C 89 ? ? -142.30 47.55 4 1 THR B 2 ? ? 50.04 -100.37 5 1 CYS B 6 ? ? 61.45 63.87 6 1 ALA B 89 ? ? -142.33 47.55 7 1 THR A 2 ? ? 50.05 -100.37 8 1 CYS A 6 ? ? 61.47 63.87 9 1 ALA A 89 ? ? -142.32 47.53 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9JBO _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 9JBO _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.39 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 92864 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Amyloid filament of human wild-type SOD1 protein' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9JBO _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9JBO _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9JBO _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY -7 ? A GLY 1 2 1 Y 1 C ALA -6 ? A ALA 2 3 1 Y 1 C MET -5 ? A MET 3 4 1 Y 1 C ASP -4 ? A ASP 4 5 1 Y 1 C PRO -3 ? A PRO 5 6 1 Y 1 C GLU -2 ? A GLU 6 7 1 Y 1 C PHE -1 ? A PHE 7 8 1 Y 1 C MET 0 ? A MET 8 9 1 Y 1 C HIS 46 ? A HIS 54 10 1 Y 1 C VAL 47 ? A VAL 55 11 1 Y 1 C HIS 48 ? A HIS 56 12 1 Y 1 C GLU 49 ? A GLU 57 13 1 Y 1 C PHE 50 ? A PHE 58 14 1 Y 1 C GLY 51 ? A GLY 59 15 1 Y 1 C ASP 52 ? A ASP 60 16 1 Y 1 C ASN 53 ? A ASN 61 17 1 Y 1 C THR 54 ? A THR 62 18 1 Y 1 C ALA 55 ? A ALA 63 19 1 Y 1 C GLY 56 ? A GLY 64 20 1 Y 1 C CYS 57 ? A CYS 65 21 1 Y 1 C THR 58 ? A THR 66 22 1 Y 1 C SER 59 ? A SER 67 23 1 Y 1 C ALA 60 ? A ALA 68 24 1 Y 1 C GLY 61 ? A GLY 69 25 1 Y 1 C PRO 62 ? A PRO 70 26 1 Y 1 C HIS 63 ? A HIS 71 27 1 Y 1 C PHE 64 ? A PHE 72 28 1 Y 1 C ASN 65 ? A ASN 73 29 1 Y 1 C PRO 66 ? A PRO 74 30 1 Y 1 C LEU 67 ? A LEU 75 31 1 Y 1 C SER 68 ? A SER 76 32 1 Y 1 C ARG 69 ? A ARG 77 33 1 Y 1 C LYS 70 ? A LYS 78 34 1 Y 1 C HIS 71 ? A HIS 79 35 1 Y 1 C GLY 72 ? A GLY 80 36 1 Y 1 C GLY 73 ? A GLY 81 37 1 Y 1 C PRO 74 ? A PRO 82 38 1 Y 1 C LYS 75 ? A LYS 83 39 1 Y 1 C ASP 76 ? A ASP 84 40 1 Y 1 C GLU 77 ? A GLU 85 41 1 Y 1 C GLU 78 ? A GLU 86 42 1 Y 1 C ARG 79 ? A ARG 87 43 1 Y 1 C HIS 80 ? A HIS 88 44 1 Y 1 C LYS 122 ? A LYS 130 45 1 Y 1 C ALA 123 ? A ALA 131 46 1 Y 1 C ASP 124 ? A ASP 132 47 1 Y 1 C ASP 125 ? A ASP 133 48 1 Y 1 C LEU 126 ? A LEU 134 49 1 Y 1 C GLY 127 ? A GLY 135 50 1 Y 1 C LYS 128 ? A LYS 136 51 1 Y 1 C GLY 129 ? A GLY 137 52 1 Y 1 C GLY 130 ? A GLY 138 53 1 Y 1 C ASN 131 ? A ASN 139 54 1 Y 1 C GLU 132 ? A GLU 140 55 1 Y 1 C GLU 133 ? A GLU 141 56 1 Y 1 C SER 134 ? A SER 142 57 1 Y 1 C THR 135 ? A THR 143 58 1 Y 1 C LYS 136 ? A LYS 144 59 1 Y 1 C THR 137 ? A THR 145 60 1 Y 1 C GLY 138 ? A GLY 146 61 1 Y 1 C ASN 139 ? A ASN 147 62 1 Y 1 C ALA 140 ? A ALA 148 63 1 Y 1 C GLY 141 ? A GLY 149 64 1 Y 1 C SER 142 ? A SER 150 65 1 Y 1 C ARG 143 ? A ARG 151 66 1 Y 1 C LEU 144 ? A LEU 152 67 1 Y 1 C ALA 145 ? A ALA 153 68 1 Y 1 C CYS 146 ? A CYS 154 69 1 Y 1 C GLY 147 ? A GLY 155 70 1 Y 1 C VAL 148 ? A VAL 156 71 1 Y 1 C ILE 149 ? A ILE 157 72 1 Y 1 C GLY 150 ? A GLY 158 73 1 Y 1 C ILE 151 ? A ILE 159 74 1 Y 1 C ALA 152 ? A ALA 160 75 1 Y 1 C GLN 153 ? A GLN 161 76 1 Y 1 B GLY -7 ? B GLY 1 77 1 Y 1 B ALA -6 ? B ALA 2 78 1 Y 1 B MET -5 ? B MET 3 79 1 Y 1 B ASP -4 ? B ASP 4 80 1 Y 1 B PRO -3 ? B PRO 5 81 1 Y 1 B GLU -2 ? B GLU 6 82 1 Y 1 B PHE -1 ? B PHE 7 83 1 Y 1 B MET 0 ? B MET 8 84 1 Y 1 B HIS 46 ? B HIS 54 85 1 Y 1 B VAL 47 ? B VAL 55 86 1 Y 1 B HIS 48 ? B HIS 56 87 1 Y 1 B GLU 49 ? B GLU 57 88 1 Y 1 B PHE 50 ? B PHE 58 89 1 Y 1 B GLY 51 ? B GLY 59 90 1 Y 1 B ASP 52 ? B ASP 60 91 1 Y 1 B ASN 53 ? B ASN 61 92 1 Y 1 B THR 54 ? B THR 62 93 1 Y 1 B ALA 55 ? B ALA 63 94 1 Y 1 B GLY 56 ? B GLY 64 95 1 Y 1 B CYS 57 ? B CYS 65 96 1 Y 1 B THR 58 ? B THR 66 97 1 Y 1 B SER 59 ? B SER 67 98 1 Y 1 B ALA 60 ? B ALA 68 99 1 Y 1 B GLY 61 ? B GLY 69 100 1 Y 1 B PRO 62 ? B PRO 70 101 1 Y 1 B HIS 63 ? B HIS 71 102 1 Y 1 B PHE 64 ? B PHE 72 103 1 Y 1 B ASN 65 ? B ASN 73 104 1 Y 1 B PRO 66 ? B PRO 74 105 1 Y 1 B LEU 67 ? B LEU 75 106 1 Y 1 B SER 68 ? B SER 76 107 1 Y 1 B ARG 69 ? B ARG 77 108 1 Y 1 B LYS 70 ? B LYS 78 109 1 Y 1 B HIS 71 ? B HIS 79 110 1 Y 1 B GLY 72 ? B GLY 80 111 1 Y 1 B GLY 73 ? B GLY 81 112 1 Y 1 B PRO 74 ? B PRO 82 113 1 Y 1 B LYS 75 ? B LYS 83 114 1 Y 1 B ASP 76 ? B ASP 84 115 1 Y 1 B GLU 77 ? B GLU 85 116 1 Y 1 B GLU 78 ? B GLU 86 117 1 Y 1 B ARG 79 ? B ARG 87 118 1 Y 1 B HIS 80 ? B HIS 88 119 1 Y 1 B LYS 122 ? B LYS 130 120 1 Y 1 B ALA 123 ? B ALA 131 121 1 Y 1 B ASP 124 ? B ASP 132 122 1 Y 1 B ASP 125 ? B ASP 133 123 1 Y 1 B LEU 126 ? B LEU 134 124 1 Y 1 B GLY 127 ? B GLY 135 125 1 Y 1 B LYS 128 ? B LYS 136 126 1 Y 1 B GLY 129 ? B GLY 137 127 1 Y 1 B GLY 130 ? B GLY 138 128 1 Y 1 B ASN 131 ? B ASN 139 129 1 Y 1 B GLU 132 ? B GLU 140 130 1 Y 1 B GLU 133 ? B GLU 141 131 1 Y 1 B SER 134 ? B SER 142 132 1 Y 1 B THR 135 ? B THR 143 133 1 Y 1 B LYS 136 ? B LYS 144 134 1 Y 1 B THR 137 ? B THR 145 135 1 Y 1 B GLY 138 ? B GLY 146 136 1 Y 1 B ASN 139 ? B ASN 147 137 1 Y 1 B ALA 140 ? B ALA 148 138 1 Y 1 B GLY 141 ? B GLY 149 139 1 Y 1 B SER 142 ? B SER 150 140 1 Y 1 B ARG 143 ? B ARG 151 141 1 Y 1 B LEU 144 ? B LEU 152 142 1 Y 1 B ALA 145 ? B ALA 153 143 1 Y 1 B CYS 146 ? B CYS 154 144 1 Y 1 B GLY 147 ? B GLY 155 145 1 Y 1 B VAL 148 ? B VAL 156 146 1 Y 1 B ILE 149 ? B ILE 157 147 1 Y 1 B GLY 150 ? B GLY 158 148 1 Y 1 B ILE 151 ? B ILE 159 149 1 Y 1 B ALA 152 ? B ALA 160 150 1 Y 1 B GLN 153 ? B GLN 161 151 1 Y 1 A GLY -7 ? C GLY 1 152 1 Y 1 A ALA -6 ? C ALA 2 153 1 Y 1 A MET -5 ? C MET 3 154 1 Y 1 A ASP -4 ? C ASP 4 155 1 Y 1 A PRO -3 ? C PRO 5 156 1 Y 1 A GLU -2 ? C GLU 6 157 1 Y 1 A PHE -1 ? C PHE 7 158 1 Y 1 A MET 0 ? C MET 8 159 1 Y 1 A HIS 46 ? C HIS 54 160 1 Y 1 A VAL 47 ? C VAL 55 161 1 Y 1 A HIS 48 ? C HIS 56 162 1 Y 1 A GLU 49 ? C GLU 57 163 1 Y 1 A PHE 50 ? C PHE 58 164 1 Y 1 A GLY 51 ? C GLY 59 165 1 Y 1 A ASP 52 ? C ASP 60 166 1 Y 1 A ASN 53 ? C ASN 61 167 1 Y 1 A THR 54 ? C THR 62 168 1 Y 1 A ALA 55 ? C ALA 63 169 1 Y 1 A GLY 56 ? C GLY 64 170 1 Y 1 A CYS 57 ? C CYS 65 171 1 Y 1 A THR 58 ? C THR 66 172 1 Y 1 A SER 59 ? C SER 67 173 1 Y 1 A ALA 60 ? C ALA 68 174 1 Y 1 A GLY 61 ? C GLY 69 175 1 Y 1 A PRO 62 ? C PRO 70 176 1 Y 1 A HIS 63 ? C HIS 71 177 1 Y 1 A PHE 64 ? C PHE 72 178 1 Y 1 A ASN 65 ? C ASN 73 179 1 Y 1 A PRO 66 ? C PRO 74 180 1 Y 1 A LEU 67 ? C LEU 75 181 1 Y 1 A SER 68 ? C SER 76 182 1 Y 1 A ARG 69 ? C ARG 77 183 1 Y 1 A LYS 70 ? C LYS 78 184 1 Y 1 A HIS 71 ? C HIS 79 185 1 Y 1 A GLY 72 ? C GLY 80 186 1 Y 1 A GLY 73 ? C GLY 81 187 1 Y 1 A PRO 74 ? C PRO 82 188 1 Y 1 A LYS 75 ? C LYS 83 189 1 Y 1 A ASP 76 ? C ASP 84 190 1 Y 1 A GLU 77 ? C GLU 85 191 1 Y 1 A GLU 78 ? C GLU 86 192 1 Y 1 A ARG 79 ? C ARG 87 193 1 Y 1 A HIS 80 ? C HIS 88 194 1 Y 1 A LYS 122 ? C LYS 130 195 1 Y 1 A ALA 123 ? C ALA 131 196 1 Y 1 A ASP 124 ? C ASP 132 197 1 Y 1 A ASP 125 ? C ASP 133 198 1 Y 1 A LEU 126 ? C LEU 134 199 1 Y 1 A GLY 127 ? C GLY 135 200 1 Y 1 A LYS 128 ? C LYS 136 201 1 Y 1 A GLY 129 ? C GLY 137 202 1 Y 1 A GLY 130 ? C GLY 138 203 1 Y 1 A ASN 131 ? C ASN 139 204 1 Y 1 A GLU 132 ? C GLU 140 205 1 Y 1 A GLU 133 ? C GLU 141 206 1 Y 1 A SER 134 ? C SER 142 207 1 Y 1 A THR 135 ? C THR 143 208 1 Y 1 A LYS 136 ? C LYS 144 209 1 Y 1 A THR 137 ? C THR 145 210 1 Y 1 A GLY 138 ? C GLY 146 211 1 Y 1 A ASN 139 ? C ASN 147 212 1 Y 1 A ALA 140 ? C ALA 148 213 1 Y 1 A GLY 141 ? C GLY 149 214 1 Y 1 A SER 142 ? C SER 150 215 1 Y 1 A ARG 143 ? C ARG 151 216 1 Y 1 A LEU 144 ? C LEU 152 217 1 Y 1 A ALA 145 ? C ALA 153 218 1 Y 1 A CYS 146 ? C CYS 154 219 1 Y 1 A GLY 147 ? C GLY 155 220 1 Y 1 A VAL 148 ? C VAL 156 221 1 Y 1 A ILE 149 ? C ILE 157 222 1 Y 1 A GLY 150 ? C GLY 158 223 1 Y 1 A ILE 151 ? C ILE 159 224 1 Y 1 A ALA 152 ? C ALA 160 225 1 Y 1 A GLN 153 ? C GLN 161 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 VAL N CA sing N N 332 VAL N H sing N N 333 VAL N H2 sing N N 334 VAL CA C sing N N 335 VAL CA CB sing N N 336 VAL CA HA sing N N 337 VAL C O doub N N 338 VAL C OXT sing N N 339 VAL CB CG1 sing N N 340 VAL CB CG2 sing N N 341 VAL CB HB sing N N 342 VAL CG1 HG11 sing N N 343 VAL CG1 HG12 sing N N 344 VAL CG1 HG13 sing N N 345 VAL CG2 HG21 sing N N 346 VAL CG2 HG22 sing N N 347 VAL CG2 HG23 sing N N 348 VAL OXT HXT sing N N 349 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-27 _em_admin.deposition_site PDBJ _em_admin.entry_id 9JBO _em_admin.last_update 2025-02-05 _em_admin.map_release_date 2025-01-15 _em_admin.title 'Cryo-EM structure of human SOD1 (WT) amyloid filament' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 34.6 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.91 _em_helical_entity.axial_rise_per_subunit 4.82 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TFS FALCON 4i (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 3102 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'TFS Selectris X' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 99812 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' 'start-end manual picking' 1 1 ? ? RELION 4.0 'IMAGE ACQUISITION' ? 2 1 ? 1 ? ? MASKING ? 3 1 1 1 ? ? 'CTF CORRECTION' Gctf 4 1 ? ? RELION 4.0 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? 'MODEL FITTING' ? 7 1 1 ? Coot ? OTHER ? 8 1 1 1 ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.21 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4.0 CLASSIFICATION ? 12 1 ? ? RELION 4.0 RECONSTRUCTION ? 13 1 ? ? RELION 4.0 # _em_specimen.concentration 4.4 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9JBO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_