data_9JHF # _entry.id 9JHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JHF pdb_00009jhf 10.2210/pdb9jhf/pdb WWPDB D_1300051300 ? ? EMDB EMD-61480 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-09-03 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JHF _pdbx_database_status.recvd_initial_deposition_date 2024-09-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-em structure of beta-LG fibril' _pdbx_database_related.db_id EMD-61480 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email 183581766@qq.com _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0009-0009-7384-4689 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xu, Y.Y.' 1 ? 'Liu, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nano Lett.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1530-6992 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 3653 _citation.page_last 3661 _citation.title 'beta-Lactoglobulin Forms a Conserved Fibril Core That Assembles into Diverse Fibril Polymorphs.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.nanolett.5c00137 _citation.pdbx_database_id_PubMed 39992798 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Y.' 1 ? primary 'Li, D.' 2 0009-0007-3350-9611 primary 'Zhang, Y.' 3 ? primary 'Zhao, Q.' 4 ? primary 'Sun, B.' 5 0000-0002-4590-7795 primary 'Liu, C.' 6 0000-0003-3425-6672 primary 'Li, D.' 7 ? primary 'Dai, B.' 8 0000-0002-2386-4413 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Beta-lactoglobulin fibrils' _entity.formula_weight 3441.067 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Beta-LG # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LIVTQTMKGLDIQKVAGTWYSLAMAASDISLL _entity_poly.pdbx_seq_one_letter_code_can LIVTQTMKGLDIQKVAGTWYSLAMAASDISLL _entity_poly.pdbx_strand_id AA,AB,AC,AE,AD,AF _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ILE n 1 3 VAL n 1 4 THR n 1 5 GLN n 1 6 THR n 1 7 MET n 1 8 LYS n 1 9 GLY n 1 10 LEU n 1 11 ASP n 1 12 ILE n 1 13 GLN n 1 14 LYS n 1 15 VAL n 1 16 ALA n 1 17 GLY n 1 18 THR n 1 19 TRP n 1 20 TYR n 1 21 SER n 1 22 LEU n 1 23 ALA n 1 24 MET n 1 25 ALA n 1 26 ALA n 1 27 SER n 1 28 ASP n 1 29 ILE n 1 30 SER n 1 31 LEU n 1 32 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 32 _entity_src_nat.common_name 'domestic cattle' _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU AA . n A 1 2 ILE 2 2 2 ILE ILE AA . n A 1 3 VAL 3 3 3 VAL VAL AA . n A 1 4 THR 4 4 4 THR THR AA . n A 1 5 GLN 5 5 5 GLN GLN AA . n A 1 6 THR 6 6 6 THR THR AA . n A 1 7 MET 7 7 7 MET MET AA . n A 1 8 LYS 8 8 8 LYS LYS AA . n A 1 9 GLY 9 9 9 GLY GLY AA . n A 1 10 LEU 10 10 10 LEU LEU AA . n A 1 11 ASP 11 11 11 ASP ASP AA . n A 1 12 ILE 12 12 12 ILE ILE AA . n A 1 13 GLN 13 13 13 GLN GLN AA . n A 1 14 LYS 14 14 14 LYS LYS AA . n A 1 15 VAL 15 15 15 VAL VAL AA . n A 1 16 ALA 16 16 16 ALA ALA AA . n A 1 17 GLY 17 17 17 GLY GLY AA . n A 1 18 THR 18 18 18 THR THR AA . n A 1 19 TRP 19 19 19 TRP TRP AA . n A 1 20 TYR 20 20 20 TYR TYR AA . n A 1 21 SER 21 21 21 SER SER AA . n A 1 22 LEU 22 22 22 LEU LEU AA . n A 1 23 ALA 23 23 23 ALA ALA AA . n A 1 24 MET 24 24 24 MET MET AA . n A 1 25 ALA 25 25 25 ALA ALA AA . n A 1 26 ALA 26 26 26 ALA ALA AA . n A 1 27 SER 27 27 27 SER SER AA . n A 1 28 ASP 28 28 28 ASP ASP AA . n A 1 29 ILE 29 29 29 ILE ILE AA . n A 1 30 SER 30 30 30 SER SER AA . n A 1 31 LEU 31 31 31 LEU LEU AA . n A 1 32 LEU 32 32 32 LEU LEU AA . n B 1 1 LEU 1 1 1 LEU LEU AB . n B 1 2 ILE 2 2 2 ILE ILE AB . n B 1 3 VAL 3 3 3 VAL VAL AB . n B 1 4 THR 4 4 4 THR THR AB . n B 1 5 GLN 5 5 5 GLN GLN AB . n B 1 6 THR 6 6 6 THR THR AB . n B 1 7 MET 7 7 7 MET MET AB . n B 1 8 LYS 8 8 8 LYS LYS AB . n B 1 9 GLY 9 9 9 GLY GLY AB . n B 1 10 LEU 10 10 10 LEU LEU AB . n B 1 11 ASP 11 11 11 ASP ASP AB . n B 1 12 ILE 12 12 12 ILE ILE AB . n B 1 13 GLN 13 13 13 GLN GLN AB . n B 1 14 LYS 14 14 14 LYS LYS AB . n B 1 15 VAL 15 15 15 VAL VAL AB . n B 1 16 ALA 16 16 16 ALA ALA AB . n B 1 17 GLY 17 17 17 GLY GLY AB . n B 1 18 THR 18 18 18 THR THR AB . n B 1 19 TRP 19 19 19 TRP TRP AB . n B 1 20 TYR 20 20 20 TYR TYR AB . n B 1 21 SER 21 21 21 SER SER AB . n B 1 22 LEU 22 22 22 LEU LEU AB . n B 1 23 ALA 23 23 23 ALA ALA AB . n B 1 24 MET 24 24 24 MET MET AB . n B 1 25 ALA 25 25 25 ALA ALA AB . n B 1 26 ALA 26 26 26 ALA ALA AB . n B 1 27 SER 27 27 27 SER SER AB . n B 1 28 ASP 28 28 28 ASP ASP AB . n B 1 29 ILE 29 29 29 ILE ILE AB . n B 1 30 SER 30 30 30 SER SER AB . n B 1 31 LEU 31 31 31 LEU LEU AB . n B 1 32 LEU 32 32 32 LEU LEU AB . n C 1 1 LEU 1 1 1 LEU LEU AC . n C 1 2 ILE 2 2 2 ILE ILE AC . n C 1 3 VAL 3 3 3 VAL VAL AC . n C 1 4 THR 4 4 4 THR THR AC . n C 1 5 GLN 5 5 5 GLN GLN AC . n C 1 6 THR 6 6 6 THR THR AC . n C 1 7 MET 7 7 7 MET MET AC . n C 1 8 LYS 8 8 8 LYS LYS AC . n C 1 9 GLY 9 9 9 GLY GLY AC . n C 1 10 LEU 10 10 10 LEU LEU AC . n C 1 11 ASP 11 11 11 ASP ASP AC . n C 1 12 ILE 12 12 12 ILE ILE AC . n C 1 13 GLN 13 13 13 GLN GLN AC . n C 1 14 LYS 14 14 14 LYS LYS AC . n C 1 15 VAL 15 15 15 VAL VAL AC . n C 1 16 ALA 16 16 16 ALA ALA AC . n C 1 17 GLY 17 17 17 GLY GLY AC . n C 1 18 THR 18 18 18 THR THR AC . n C 1 19 TRP 19 19 19 TRP TRP AC . n C 1 20 TYR 20 20 20 TYR TYR AC . n C 1 21 SER 21 21 21 SER SER AC . n C 1 22 LEU 22 22 22 LEU LEU AC . n C 1 23 ALA 23 23 23 ALA ALA AC . n C 1 24 MET 24 24 24 MET MET AC . n C 1 25 ALA 25 25 25 ALA ALA AC . n C 1 26 ALA 26 26 26 ALA ALA AC . n C 1 27 SER 27 27 27 SER SER AC . n C 1 28 ASP 28 28 28 ASP ASP AC . n C 1 29 ILE 29 29 29 ILE ILE AC . n C 1 30 SER 30 30 30 SER SER AC . n C 1 31 LEU 31 31 31 LEU LEU AC . n C 1 32 LEU 32 32 32 LEU LEU AC . n D 1 1 LEU 1 1 1 LEU LEU AE . n D 1 2 ILE 2 2 2 ILE ILE AE . n D 1 3 VAL 3 3 3 VAL VAL AE . n D 1 4 THR 4 4 4 THR THR AE . n D 1 5 GLN 5 5 5 GLN GLN AE . n D 1 6 THR 6 6 6 THR THR AE . n D 1 7 MET 7 7 7 MET MET AE . n D 1 8 LYS 8 8 8 LYS LYS AE . n D 1 9 GLY 9 9 9 GLY GLY AE . n D 1 10 LEU 10 10 10 LEU LEU AE . n D 1 11 ASP 11 11 11 ASP ASP AE . n D 1 12 ILE 12 12 12 ILE ILE AE . n D 1 13 GLN 13 13 13 GLN GLN AE . n D 1 14 LYS 14 14 14 LYS LYS AE . n D 1 15 VAL 15 15 15 VAL VAL AE . n D 1 16 ALA 16 16 16 ALA ALA AE . n D 1 17 GLY 17 17 17 GLY GLY AE . n D 1 18 THR 18 18 18 THR THR AE . n D 1 19 TRP 19 19 19 TRP TRP AE . n D 1 20 TYR 20 20 20 TYR TYR AE . n D 1 21 SER 21 21 21 SER SER AE . n D 1 22 LEU 22 22 22 LEU LEU AE . n D 1 23 ALA 23 23 23 ALA ALA AE . n D 1 24 MET 24 24 24 MET MET AE . n D 1 25 ALA 25 25 25 ALA ALA AE . n D 1 26 ALA 26 26 26 ALA ALA AE . n D 1 27 SER 27 27 27 SER SER AE . n D 1 28 ASP 28 28 28 ASP ASP AE . n D 1 29 ILE 29 29 29 ILE ILE AE . n D 1 30 SER 30 30 30 SER SER AE . n D 1 31 LEU 31 31 31 LEU LEU AE . n D 1 32 LEU 32 32 32 LEU LEU AE . n E 1 1 LEU 1 1 1 LEU LEU AD . n E 1 2 ILE 2 2 2 ILE ILE AD . n E 1 3 VAL 3 3 3 VAL VAL AD . n E 1 4 THR 4 4 4 THR THR AD . n E 1 5 GLN 5 5 5 GLN GLN AD . n E 1 6 THR 6 6 6 THR THR AD . n E 1 7 MET 7 7 7 MET MET AD . n E 1 8 LYS 8 8 8 LYS LYS AD . n E 1 9 GLY 9 9 9 GLY GLY AD . n E 1 10 LEU 10 10 10 LEU LEU AD . n E 1 11 ASP 11 11 11 ASP ASP AD . n E 1 12 ILE 12 12 12 ILE ILE AD . n E 1 13 GLN 13 13 13 GLN GLN AD . n E 1 14 LYS 14 14 14 LYS LYS AD . n E 1 15 VAL 15 15 15 VAL VAL AD . n E 1 16 ALA 16 16 16 ALA ALA AD . n E 1 17 GLY 17 17 17 GLY GLY AD . n E 1 18 THR 18 18 18 THR THR AD . n E 1 19 TRP 19 19 19 TRP TRP AD . n E 1 20 TYR 20 20 20 TYR TYR AD . n E 1 21 SER 21 21 21 SER SER AD . n E 1 22 LEU 22 22 22 LEU LEU AD . n E 1 23 ALA 23 23 23 ALA ALA AD . n E 1 24 MET 24 24 24 MET MET AD . n E 1 25 ALA 25 25 25 ALA ALA AD . n E 1 26 ALA 26 26 26 ALA ALA AD . n E 1 27 SER 27 27 27 SER SER AD . n E 1 28 ASP 28 28 28 ASP ASP AD . n E 1 29 ILE 29 29 29 ILE ILE AD . n E 1 30 SER 30 30 30 SER SER AD . n E 1 31 LEU 31 31 31 LEU LEU AD . n E 1 32 LEU 32 32 32 LEU LEU AD . n F 1 1 LEU 1 1 1 LEU LEU AF . n F 1 2 ILE 2 2 2 ILE ILE AF . n F 1 3 VAL 3 3 3 VAL VAL AF . n F 1 4 THR 4 4 4 THR THR AF . n F 1 5 GLN 5 5 5 GLN GLN AF . n F 1 6 THR 6 6 6 THR THR AF . n F 1 7 MET 7 7 7 MET MET AF . n F 1 8 LYS 8 8 8 LYS LYS AF . n F 1 9 GLY 9 9 9 GLY GLY AF . n F 1 10 LEU 10 10 10 LEU LEU AF . n F 1 11 ASP 11 11 11 ASP ASP AF . n F 1 12 ILE 12 12 12 ILE ILE AF . n F 1 13 GLN 13 13 13 GLN GLN AF . n F 1 14 LYS 14 14 14 LYS LYS AF . n F 1 15 VAL 15 15 15 VAL VAL AF . n F 1 16 ALA 16 16 16 ALA ALA AF . n F 1 17 GLY 17 17 17 GLY GLY AF . n F 1 18 THR 18 18 18 THR THR AF . n F 1 19 TRP 19 19 19 TRP TRP AF . n F 1 20 TYR 20 20 20 TYR TYR AF . n F 1 21 SER 21 21 21 SER SER AF . n F 1 22 LEU 22 22 22 LEU LEU AF . n F 1 23 ALA 23 23 23 ALA ALA AF . n F 1 24 MET 24 24 24 MET MET AF . n F 1 25 ALA 25 25 25 ALA ALA AF . n F 1 26 ALA 26 26 26 ALA ALA AF . n F 1 27 SER 27 27 27 SER SER AF . n F 1 28 ASP 28 28 28 ASP ASP AF . n F 1 29 ILE 29 29 29 ILE ILE AF . n F 1 30 SER 30 30 30 SER SER AF . n F 1 31 LEU 31 31 31 LEU LEU AF . n F 1 32 LEU 32 32 32 LEU LEU AF . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JHF _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9JHF _struct.title 'Cryo-EM structure of beta-LG fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JHF _struct_keywords.text 'protein fribril, nanomaterials, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LACB_BOVIN _struct_ref.pdbx_db_accession P02754 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LIVTQTMKGLDIQKVAGTWYSLAMAASDISLL _struct_ref.pdbx_align_begin 17 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JHF AA 1 ? 32 ? P02754 17 ? 48 ? 1 32 2 1 9JHF AB 1 ? 32 ? P02754 17 ? 48 ? 1 32 3 1 9JHF AC 1 ? 32 ? P02754 17 ? 48 ? 1 32 4 1 9JHF AE 1 ? 32 ? P02754 17 ? 48 ? 1 32 5 1 9JHF AD 1 ? 32 ? P02754 17 ? 48 ? 1 32 6 1 9JHF AF 1 ? 32 ? P02754 17 ? 48 ? 1 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE C 2 ? GLN C 13 ? ILE AC 2 GLN AC 13 AA1 2 ILE A 2 ? GLN A 13 ? ILE AA 2 GLN AA 13 AA1 3 ILE E 2 ? GLN E 13 ? ILE AD 2 GLN AD 13 AA2 1 ALA C 23 ? ALA C 25 ? ALA AC 23 ALA AC 25 AA2 2 ALA A 23 ? ALA A 25 ? ALA AA 23 ALA AA 25 AA2 3 ALA E 23 ? ALA E 25 ? ALA AD 23 ALA AD 25 AA3 1 ASP C 28 ? LEU C 31 ? ASP AC 28 LEU AC 31 AA3 2 ASP A 28 ? LEU A 31 ? ASP AA 28 LEU AA 31 AA3 3 ASP E 28 ? LEU E 31 ? ASP AD 28 LEU AD 31 AA4 1 ILE D 2 ? GLN D 13 ? ILE AE 2 GLN AE 13 AA4 2 ILE B 2 ? GLN B 13 ? ILE AB 2 GLN AB 13 AA4 3 ILE F 2 ? GLN F 13 ? ILE AF 2 GLN AF 13 AA5 1 ALA D 23 ? LEU D 31 ? ALA AE 23 LEU AE 31 AA5 2 ALA B 23 ? LEU B 31 ? ALA AB 23 LEU AB 31 AA5 3 ALA F 23 ? LEU F 31 ? ALA AF 23 LEU AF 31 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP C 11 ? O ASP AC 11 N ILE A 12 ? N ILE AA 12 AA1 2 3 N ILE A 2 ? N ILE AA 2 O VAL E 3 ? O VAL AD 3 AA2 1 2 O MET C 24 ? O MET AC 24 N ALA A 23 ? N ALA AA 23 AA2 2 3 N MET A 24 ? N MET AA 24 O ALA E 23 ? O ALA AD 23 AA3 1 2 O LEU C 31 ? O LEU AC 31 N SER A 30 ? N SER AA 30 AA3 2 3 N LEU A 31 ? N LEU AA 31 O SER E 30 ? O SER AD 30 AA4 1 2 O ASP D 11 ? O ASP AE 11 N ILE B 12 ? N ILE AB 12 AA4 2 3 N ASP B 11 ? N ASP AB 11 O ILE F 12 ? O ILE AF 12 AA5 1 2 O MET D 24 ? O MET AE 24 N ALA B 23 ? N ALA AB 23 AA5 2 3 N LEU B 31 ? N LEU AB 31 O SER F 30 ? O SER AF 30 # _pdbx_entry_details.entry_id 9JHF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR AA 20 ? ? -81.94 -73.67 2 1 TYR AB 20 ? ? -81.86 -73.84 3 1 TYR AC 20 ? ? -82.01 -73.68 4 1 TYR AE 20 ? ? -81.96 -73.68 5 1 TYR AD 20 ? ? -81.99 -73.76 6 1 TYR AF 20 ? ? -81.98 -73.71 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9JHF _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9JHF _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.06 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 31562 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 2.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Beta-Lactoglobulin fibril in Bos taurus whey' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9JHF _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9JHF _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9JHF _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLN N N N N 30 GLN CA C N S 31 GLN C C N N 32 GLN O O N N 33 GLN CB C N N 34 GLN CG C N N 35 GLN CD C N N 36 GLN OE1 O N N 37 GLN NE2 N N N 38 GLN OXT O N N 39 GLN H H N N 40 GLN H2 H N N 41 GLN HA H N N 42 GLN HB2 H N N 43 GLN HB3 H N N 44 GLN HG2 H N N 45 GLN HG3 H N N 46 GLN HE21 H N N 47 GLN HE22 H N N 48 GLN HXT H N N 49 GLY N N N N 50 GLY CA C N N 51 GLY C C N N 52 GLY O O N N 53 GLY OXT O N N 54 GLY H H N N 55 GLY H2 H N N 56 GLY HA2 H N N 57 GLY HA3 H N N 58 GLY HXT H N N 59 ILE N N N N 60 ILE CA C N S 61 ILE C C N N 62 ILE O O N N 63 ILE CB C N S 64 ILE CG1 C N N 65 ILE CG2 C N N 66 ILE CD1 C N N 67 ILE OXT O N N 68 ILE H H N N 69 ILE H2 H N N 70 ILE HA H N N 71 ILE HB H N N 72 ILE HG12 H N N 73 ILE HG13 H N N 74 ILE HG21 H N N 75 ILE HG22 H N N 76 ILE HG23 H N N 77 ILE HD11 H N N 78 ILE HD12 H N N 79 ILE HD13 H N N 80 ILE HXT H N N 81 LEU N N N N 82 LEU CA C N S 83 LEU C C N N 84 LEU O O N N 85 LEU CB C N N 86 LEU CG C N N 87 LEU CD1 C N N 88 LEU CD2 C N N 89 LEU OXT O N N 90 LEU H H N N 91 LEU H2 H N N 92 LEU HA H N N 93 LEU HB2 H N N 94 LEU HB3 H N N 95 LEU HG H N N 96 LEU HD11 H N N 97 LEU HD12 H N N 98 LEU HD13 H N N 99 LEU HD21 H N N 100 LEU HD22 H N N 101 LEU HD23 H N N 102 LEU HXT H N N 103 LYS N N N N 104 LYS CA C N S 105 LYS C C N N 106 LYS O O N N 107 LYS CB C N N 108 LYS CG C N N 109 LYS CD C N N 110 LYS CE C N N 111 LYS NZ N N N 112 LYS OXT O N N 113 LYS H H N N 114 LYS H2 H N N 115 LYS HA H N N 116 LYS HB2 H N N 117 LYS HB3 H N N 118 LYS HG2 H N N 119 LYS HG3 H N N 120 LYS HD2 H N N 121 LYS HD3 H N N 122 LYS HE2 H N N 123 LYS HE3 H N N 124 LYS HZ1 H N N 125 LYS HZ2 H N N 126 LYS HZ3 H N N 127 LYS HXT H N N 128 MET N N N N 129 MET CA C N S 130 MET C C N N 131 MET O O N N 132 MET CB C N N 133 MET CG C N N 134 MET SD S N N 135 MET CE C N N 136 MET OXT O N N 137 MET H H N N 138 MET H2 H N N 139 MET HA H N N 140 MET HB2 H N N 141 MET HB3 H N N 142 MET HG2 H N N 143 MET HG3 H N N 144 MET HE1 H N N 145 MET HE2 H N N 146 MET HE3 H N N 147 MET HXT H N N 148 SER N N N N 149 SER CA C N S 150 SER C C N N 151 SER O O N N 152 SER CB C N N 153 SER OG O N N 154 SER OXT O N N 155 SER H H N N 156 SER H2 H N N 157 SER HA H N N 158 SER HB2 H N N 159 SER HB3 H N N 160 SER HG H N N 161 SER HXT H N N 162 THR N N N N 163 THR CA C N S 164 THR C C N N 165 THR O O N N 166 THR CB C N R 167 THR OG1 O N N 168 THR CG2 C N N 169 THR OXT O N N 170 THR H H N N 171 THR H2 H N N 172 THR HA H N N 173 THR HB H N N 174 THR HG1 H N N 175 THR HG21 H N N 176 THR HG22 H N N 177 THR HG23 H N N 178 THR HXT H N N 179 TRP N N N N 180 TRP CA C N S 181 TRP C C N N 182 TRP O O N N 183 TRP CB C N N 184 TRP CG C Y N 185 TRP CD1 C Y N 186 TRP CD2 C Y N 187 TRP NE1 N Y N 188 TRP CE2 C Y N 189 TRP CE3 C Y N 190 TRP CZ2 C Y N 191 TRP CZ3 C Y N 192 TRP CH2 C Y N 193 TRP OXT O N N 194 TRP H H N N 195 TRP H2 H N N 196 TRP HA H N N 197 TRP HB2 H N N 198 TRP HB3 H N N 199 TRP HD1 H N N 200 TRP HE1 H N N 201 TRP HE3 H N N 202 TRP HZ2 H N N 203 TRP HZ3 H N N 204 TRP HH2 H N N 205 TRP HXT H N N 206 TYR N N N N 207 TYR CA C N S 208 TYR C C N N 209 TYR O O N N 210 TYR CB C N N 211 TYR CG C Y N 212 TYR CD1 C Y N 213 TYR CD2 C Y N 214 TYR CE1 C Y N 215 TYR CE2 C Y N 216 TYR CZ C Y N 217 TYR OH O N N 218 TYR OXT O N N 219 TYR H H N N 220 TYR H2 H N N 221 TYR HA H N N 222 TYR HB2 H N N 223 TYR HB3 H N N 224 TYR HD1 H N N 225 TYR HD2 H N N 226 TYR HE1 H N N 227 TYR HE2 H N N 228 TYR HH H N N 229 TYR HXT H N N 230 VAL N N N N 231 VAL CA C N S 232 VAL C C N N 233 VAL O O N N 234 VAL CB C N N 235 VAL CG1 C N N 236 VAL CG2 C N N 237 VAL OXT O N N 238 VAL H H N N 239 VAL H2 H N N 240 VAL HA H N N 241 VAL HB H N N 242 VAL HG11 H N N 243 VAL HG12 H N N 244 VAL HG13 H N N 245 VAL HG21 H N N 246 VAL HG22 H N N 247 VAL HG23 H N N 248 VAL HXT H N N 249 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLN N CA sing N N 28 GLN N H sing N N 29 GLN N H2 sing N N 30 GLN CA C sing N N 31 GLN CA CB sing N N 32 GLN CA HA sing N N 33 GLN C O doub N N 34 GLN C OXT sing N N 35 GLN CB CG sing N N 36 GLN CB HB2 sing N N 37 GLN CB HB3 sing N N 38 GLN CG CD sing N N 39 GLN CG HG2 sing N N 40 GLN CG HG3 sing N N 41 GLN CD OE1 doub N N 42 GLN CD NE2 sing N N 43 GLN NE2 HE21 sing N N 44 GLN NE2 HE22 sing N N 45 GLN OXT HXT sing N N 46 GLY N CA sing N N 47 GLY N H sing N N 48 GLY N H2 sing N N 49 GLY CA C sing N N 50 GLY CA HA2 sing N N 51 GLY CA HA3 sing N N 52 GLY C O doub N N 53 GLY C OXT sing N N 54 GLY OXT HXT sing N N 55 ILE N CA sing N N 56 ILE N H sing N N 57 ILE N H2 sing N N 58 ILE CA C sing N N 59 ILE CA CB sing N N 60 ILE CA HA sing N N 61 ILE C O doub N N 62 ILE C OXT sing N N 63 ILE CB CG1 sing N N 64 ILE CB CG2 sing N N 65 ILE CB HB sing N N 66 ILE CG1 CD1 sing N N 67 ILE CG1 HG12 sing N N 68 ILE CG1 HG13 sing N N 69 ILE CG2 HG21 sing N N 70 ILE CG2 HG22 sing N N 71 ILE CG2 HG23 sing N N 72 ILE CD1 HD11 sing N N 73 ILE CD1 HD12 sing N N 74 ILE CD1 HD13 sing N N 75 ILE OXT HXT sing N N 76 LEU N CA sing N N 77 LEU N H sing N N 78 LEU N H2 sing N N 79 LEU CA C sing N N 80 LEU CA CB sing N N 81 LEU CA HA sing N N 82 LEU C O doub N N 83 LEU C OXT sing N N 84 LEU CB CG sing N N 85 LEU CB HB2 sing N N 86 LEU CB HB3 sing N N 87 LEU CG CD1 sing N N 88 LEU CG CD2 sing N N 89 LEU CG HG sing N N 90 LEU CD1 HD11 sing N N 91 LEU CD1 HD12 sing N N 92 LEU CD1 HD13 sing N N 93 LEU CD2 HD21 sing N N 94 LEU CD2 HD22 sing N N 95 LEU CD2 HD23 sing N N 96 LEU OXT HXT sing N N 97 LYS N CA sing N N 98 LYS N H sing N N 99 LYS N H2 sing N N 100 LYS CA C sing N N 101 LYS CA CB sing N N 102 LYS CA HA sing N N 103 LYS C O doub N N 104 LYS C OXT sing N N 105 LYS CB CG sing N N 106 LYS CB HB2 sing N N 107 LYS CB HB3 sing N N 108 LYS CG CD sing N N 109 LYS CG HG2 sing N N 110 LYS CG HG3 sing N N 111 LYS CD CE sing N N 112 LYS CD HD2 sing N N 113 LYS CD HD3 sing N N 114 LYS CE NZ sing N N 115 LYS CE HE2 sing N N 116 LYS CE HE3 sing N N 117 LYS NZ HZ1 sing N N 118 LYS NZ HZ2 sing N N 119 LYS NZ HZ3 sing N N 120 LYS OXT HXT sing N N 121 MET N CA sing N N 122 MET N H sing N N 123 MET N H2 sing N N 124 MET CA C sing N N 125 MET CA CB sing N N 126 MET CA HA sing N N 127 MET C O doub N N 128 MET C OXT sing N N 129 MET CB CG sing N N 130 MET CB HB2 sing N N 131 MET CB HB3 sing N N 132 MET CG SD sing N N 133 MET CG HG2 sing N N 134 MET CG HG3 sing N N 135 MET SD CE sing N N 136 MET CE HE1 sing N N 137 MET CE HE2 sing N N 138 MET CE HE3 sing N N 139 MET OXT HXT sing N N 140 SER N CA sing N N 141 SER N H sing N N 142 SER N H2 sing N N 143 SER CA C sing N N 144 SER CA CB sing N N 145 SER CA HA sing N N 146 SER C O doub N N 147 SER C OXT sing N N 148 SER CB OG sing N N 149 SER CB HB2 sing N N 150 SER CB HB3 sing N N 151 SER OG HG sing N N 152 SER OXT HXT sing N N 153 THR N CA sing N N 154 THR N H sing N N 155 THR N H2 sing N N 156 THR CA C sing N N 157 THR CA CB sing N N 158 THR CA HA sing N N 159 THR C O doub N N 160 THR C OXT sing N N 161 THR CB OG1 sing N N 162 THR CB CG2 sing N N 163 THR CB HB sing N N 164 THR OG1 HG1 sing N N 165 THR CG2 HG21 sing N N 166 THR CG2 HG22 sing N N 167 THR CG2 HG23 sing N N 168 THR OXT HXT sing N N 169 TRP N CA sing N N 170 TRP N H sing N N 171 TRP N H2 sing N N 172 TRP CA C sing N N 173 TRP CA CB sing N N 174 TRP CA HA sing N N 175 TRP C O doub N N 176 TRP C OXT sing N N 177 TRP CB CG sing N N 178 TRP CB HB2 sing N N 179 TRP CB HB3 sing N N 180 TRP CG CD1 doub Y N 181 TRP CG CD2 sing Y N 182 TRP CD1 NE1 sing Y N 183 TRP CD1 HD1 sing N N 184 TRP CD2 CE2 doub Y N 185 TRP CD2 CE3 sing Y N 186 TRP NE1 CE2 sing Y N 187 TRP NE1 HE1 sing N N 188 TRP CE2 CZ2 sing Y N 189 TRP CE3 CZ3 doub Y N 190 TRP CE3 HE3 sing N N 191 TRP CZ2 CH2 doub Y N 192 TRP CZ2 HZ2 sing N N 193 TRP CZ3 CH2 sing Y N 194 TRP CZ3 HZ3 sing N N 195 TRP CH2 HH2 sing N N 196 TRP OXT HXT sing N N 197 TYR N CA sing N N 198 TYR N H sing N N 199 TYR N H2 sing N N 200 TYR CA C sing N N 201 TYR CA CB sing N N 202 TYR CA HA sing N N 203 TYR C O doub N N 204 TYR C OXT sing N N 205 TYR CB CG sing N N 206 TYR CB HB2 sing N N 207 TYR CB HB3 sing N N 208 TYR CG CD1 doub Y N 209 TYR CG CD2 sing Y N 210 TYR CD1 CE1 sing Y N 211 TYR CD1 HD1 sing N N 212 TYR CD2 CE2 doub Y N 213 TYR CD2 HD2 sing N N 214 TYR CE1 CZ doub Y N 215 TYR CE1 HE1 sing N N 216 TYR CE2 CZ sing Y N 217 TYR CE2 HE2 sing N N 218 TYR CZ OH sing N N 219 TYR OH HH sing N N 220 TYR OXT HXT sing N N 221 VAL N CA sing N N 222 VAL N H sing N N 223 VAL N H2 sing N N 224 VAL CA C sing N N 225 VAL CA CB sing N N 226 VAL CA HA sing N N 227 VAL C O doub N N 228 VAL C OXT sing N N 229 VAL CB CG1 sing N N 230 VAL CB CG2 sing N N 231 VAL CB HB sing N N 232 VAL CG1 HG11 sing N N 233 VAL CG1 HG12 sing N N 234 VAL CG1 HG13 sing N N 235 VAL CG2 HG21 sing N N 236 VAL CG2 HG22 sing N N 237 VAL CG2 HG23 sing N N 238 VAL OXT HXT sing N N 239 # _em_admin.current_status REL _em_admin.deposition_date 2024-09-09 _em_admin.deposition_site PDBJ _em_admin.entry_id 9JHF _em_admin.last_update 2025-09-03 _em_admin.map_release_date 2025-09-03 _em_admin.title 'Cryo-EM structure of beta-LG fibril' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9913 _em_entity_assembly_naturalsource.organism 'Bos taurus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -2.38 _em_helical_entity.axial_rise_per_subunit 4.81 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? Coot ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9JHF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #