data_9JI8 # _entry.id 9JI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JI8 pdb_00009ji8 10.2210/pdb9ji8/pdb WWPDB D_1300051276 ? ? EMDB EMD-61500 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-17 ? 2 'EM metadata' 1 0 2025-09-17 ? 3 FSC 1 0 2025-09-17 ? 4 'Half map' 1 0 2025-09-17 1 5 'Half map' 1 0 2025-09-17 2 6 Image 1 0 2025-09-17 ? 7 'Primary map' 1 0 2025-09-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JI8 _pdbx_database_status.recvd_initial_deposition_date 2024-09-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of alpha-synuclein-H21 fibril' _pdbx_database_related.db_id EMD-61500 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dannielee@sjtu.edu.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zeng, S.Y.' 1 ? 'Zhang, S.N.' 2 ? 'Li, D.N.' 3 ? 'Liu, C.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of alpha-synuclein-H21 fibril' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeng, S.Y.' 1 ? primary 'Zhang, S.N.' 2 ? primary 'Li, D.N.' 3 ? primary 'Liu, C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man GLY-VAL-VAL-ALA-ALA-ALA-GLU-LYS-THR-LYS 975.139 6 ? ? ? ? 2 polymer man Alpha-synuclein 6251.097 6 ? ? 'UNP residues 37-99' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GVVAAAEKTK GVVAAAEKTK D,H,E,I,J,N ? 2 'polypeptide(L)' no no VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ F,K,G,L,M,O ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 VAL n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 GLU n 1 8 LYS n 1 9 THR n 1 10 LYS n 2 1 VAL n 2 2 LEU n 2 3 TYR n 2 4 VAL n 2 5 GLY n 2 6 SER n 2 7 LYS n 2 8 THR n 2 9 LYS n 2 10 GLU n 2 11 GLY n 2 12 VAL n 2 13 VAL n 2 14 HIS n 2 15 GLY n 2 16 VAL n 2 17 ALA n 2 18 THR n 2 19 VAL n 2 20 ALA n 2 21 GLU n 2 22 LYS n 2 23 THR n 2 24 LYS n 2 25 GLU n 2 26 GLN n 2 27 VAL n 2 28 THR n 2 29 ASN n 2 30 VAL n 2 31 GLY n 2 32 GLY n 2 33 ALA n 2 34 VAL n 2 35 VAL n 2 36 THR n 2 37 GLY n 2 38 VAL n 2 39 THR n 2 40 ALA n 2 41 VAL n 2 42 ALA n 2 43 GLN n 2 44 LYS n 2 45 THR n 2 46 VAL n 2 47 GLU n 2 48 GLY n 2 49 ALA n 2 50 GLY n 2 51 SER n 2 52 ILE n 2 53 ALA n 2 54 ALA n 2 55 ALA n 2 56 THR n 2 57 GLY n 2 58 PHE n 2 59 VAL n 2 60 LYS n 2 61 LYS n 2 62 ASP n 2 63 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 10 human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 63 human ? 'SNCA, NACP, PARK1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 14 14 GLY GLY D . n A 1 2 VAL 2 15 15 VAL VAL D . n A 1 3 VAL 3 16 16 VAL VAL D . n A 1 4 ALA 4 17 17 ALA ALA D . n A 1 5 ALA 5 18 18 ALA ALA D . n A 1 6 ALA 6 19 19 ALA ALA D . n A 1 7 GLU 7 20 20 GLU GLU D . n A 1 8 LYS 8 21 21 LYS LYS D . n A 1 9 THR 9 22 22 THR THR D . n A 1 10 LYS 10 23 23 LYS LYS D . n B 2 1 VAL 1 37 37 VAL VAL F . n B 2 2 LEU 2 38 38 LEU LEU F . n B 2 3 TYR 3 39 39 TYR TYR F . n B 2 4 VAL 4 40 40 VAL VAL F . n B 2 5 GLY 5 41 41 GLY GLY F . n B 2 6 SER 6 42 42 SER SER F . n B 2 7 LYS 7 43 43 LYS LYS F . n B 2 8 THR 8 44 44 THR THR F . n B 2 9 LYS 9 45 45 LYS LYS F . n B 2 10 GLU 10 46 46 GLU GLU F . n B 2 11 GLY 11 47 47 GLY GLY F . n B 2 12 VAL 12 48 48 VAL VAL F . n B 2 13 VAL 13 49 49 VAL VAL F . n B 2 14 HIS 14 50 50 HIS HIS F . n B 2 15 GLY 15 51 51 GLY GLY F . n B 2 16 VAL 16 52 52 VAL VAL F . n B 2 17 ALA 17 53 53 ALA ALA F . n B 2 18 THR 18 54 54 THR THR F . n B 2 19 VAL 19 55 55 VAL VAL F . n B 2 20 ALA 20 56 56 ALA ALA F . n B 2 21 GLU 21 57 57 GLU GLU F . n B 2 22 LYS 22 58 58 LYS LYS F . n B 2 23 THR 23 59 59 THR THR F . n B 2 24 LYS 24 60 60 LYS LYS F . n B 2 25 GLU 25 61 61 GLU GLU F . n B 2 26 GLN 26 62 62 GLN GLN F . n B 2 27 VAL 27 63 63 VAL VAL F . n B 2 28 THR 28 64 64 THR THR F . n B 2 29 ASN 29 65 65 ASN ASN F . n B 2 30 VAL 30 66 66 VAL VAL F . n B 2 31 GLY 31 67 67 GLY GLY F . n B 2 32 GLY 32 68 68 GLY GLY F . n B 2 33 ALA 33 69 69 ALA ALA F . n B 2 34 VAL 34 70 70 VAL VAL F . n B 2 35 VAL 35 71 71 VAL VAL F . n B 2 36 THR 36 72 72 THR THR F . n B 2 37 GLY 37 73 73 GLY GLY F . n B 2 38 VAL 38 74 74 VAL VAL F . n B 2 39 THR 39 75 75 THR THR F . n B 2 40 ALA 40 76 76 ALA ALA F . n B 2 41 VAL 41 77 77 VAL VAL F . n B 2 42 ALA 42 78 78 ALA ALA F . n B 2 43 GLN 43 79 79 GLN GLN F . n B 2 44 LYS 44 80 80 LYS LYS F . n B 2 45 THR 45 81 81 THR THR F . n B 2 46 VAL 46 82 82 VAL VAL F . n B 2 47 GLU 47 83 83 GLU GLU F . n B 2 48 GLY 48 84 84 GLY GLY F . n B 2 49 ALA 49 85 85 ALA ALA F . n B 2 50 GLY 50 86 86 GLY GLY F . n B 2 51 SER 51 87 87 SER SER F . n B 2 52 ILE 52 88 88 ILE ILE F . n B 2 53 ALA 53 89 89 ALA ALA F . n B 2 54 ALA 54 90 90 ALA ALA F . n B 2 55 ALA 55 91 91 ALA ALA F . n B 2 56 THR 56 92 92 THR THR F . n B 2 57 GLY 57 93 93 GLY GLY F . n B 2 58 PHE 58 94 94 PHE PHE F . n B 2 59 VAL 59 95 95 VAL VAL F . n B 2 60 LYS 60 96 96 LYS LYS F . n B 2 61 LYS 61 97 97 LYS LYS F . n B 2 62 ASP 62 98 98 ASP ASP F . n B 2 63 GLN 63 99 99 GLN GLN F . n C 1 1 GLY 1 14 14 GLY GLY H . n C 1 2 VAL 2 15 15 VAL VAL H . n C 1 3 VAL 3 16 16 VAL VAL H . n C 1 4 ALA 4 17 17 ALA ALA H . n C 1 5 ALA 5 18 18 ALA ALA H . n C 1 6 ALA 6 19 19 ALA ALA H . n C 1 7 GLU 7 20 20 GLU GLU H . n C 1 8 LYS 8 21 21 LYS LYS H . n C 1 9 THR 9 22 22 THR THR H . n C 1 10 LYS 10 23 23 LYS LYS H . n D 2 1 VAL 1 37 37 VAL VAL K . n D 2 2 LEU 2 38 38 LEU LEU K . n D 2 3 TYR 3 39 39 TYR TYR K . n D 2 4 VAL 4 40 40 VAL VAL K . n D 2 5 GLY 5 41 41 GLY GLY K . n D 2 6 SER 6 42 42 SER SER K . n D 2 7 LYS 7 43 43 LYS LYS K . n D 2 8 THR 8 44 44 THR THR K . n D 2 9 LYS 9 45 45 LYS LYS K . n D 2 10 GLU 10 46 46 GLU GLU K . n D 2 11 GLY 11 47 47 GLY GLY K . n D 2 12 VAL 12 48 48 VAL VAL K . n D 2 13 VAL 13 49 49 VAL VAL K . n D 2 14 HIS 14 50 50 HIS HIS K . n D 2 15 GLY 15 51 51 GLY GLY K . n D 2 16 VAL 16 52 52 VAL VAL K . n D 2 17 ALA 17 53 53 ALA ALA K . n D 2 18 THR 18 54 54 THR THR K . n D 2 19 VAL 19 55 55 VAL VAL K . n D 2 20 ALA 20 56 56 ALA ALA K . n D 2 21 GLU 21 57 57 GLU GLU K . n D 2 22 LYS 22 58 58 LYS LYS K . n D 2 23 THR 23 59 59 THR THR K . n D 2 24 LYS 24 60 60 LYS LYS K . n D 2 25 GLU 25 61 61 GLU GLU K . n D 2 26 GLN 26 62 62 GLN GLN K . n D 2 27 VAL 27 63 63 VAL VAL K . n D 2 28 THR 28 64 64 THR THR K . n D 2 29 ASN 29 65 65 ASN ASN K . n D 2 30 VAL 30 66 66 VAL VAL K . n D 2 31 GLY 31 67 67 GLY GLY K . n D 2 32 GLY 32 68 68 GLY GLY K . n D 2 33 ALA 33 69 69 ALA ALA K . n D 2 34 VAL 34 70 70 VAL VAL K . n D 2 35 VAL 35 71 71 VAL VAL K . n D 2 36 THR 36 72 72 THR THR K . n D 2 37 GLY 37 73 73 GLY GLY K . n D 2 38 VAL 38 74 74 VAL VAL K . n D 2 39 THR 39 75 75 THR THR K . n D 2 40 ALA 40 76 76 ALA ALA K . n D 2 41 VAL 41 77 77 VAL VAL K . n D 2 42 ALA 42 78 78 ALA ALA K . n D 2 43 GLN 43 79 79 GLN GLN K . n D 2 44 LYS 44 80 80 LYS LYS K . n D 2 45 THR 45 81 81 THR THR K . n D 2 46 VAL 46 82 82 VAL VAL K . n D 2 47 GLU 47 83 83 GLU GLU K . n D 2 48 GLY 48 84 84 GLY GLY K . n D 2 49 ALA 49 85 85 ALA ALA K . n D 2 50 GLY 50 86 86 GLY GLY K . n D 2 51 SER 51 87 87 SER SER K . n D 2 52 ILE 52 88 88 ILE ILE K . n D 2 53 ALA 53 89 89 ALA ALA K . n D 2 54 ALA 54 90 90 ALA ALA K . n D 2 55 ALA 55 91 91 ALA ALA K . n D 2 56 THR 56 92 92 THR THR K . n D 2 57 GLY 57 93 93 GLY GLY K . n D 2 58 PHE 58 94 94 PHE PHE K . n D 2 59 VAL 59 95 95 VAL VAL K . n D 2 60 LYS 60 96 96 LYS LYS K . n D 2 61 LYS 61 97 97 LYS LYS K . n D 2 62 ASP 62 98 98 ASP ASP K . n D 2 63 GLN 63 99 99 GLN GLN K . n E 1 1 GLY 1 14 14 GLY GLY E . n E 1 2 VAL 2 15 15 VAL VAL E . n E 1 3 VAL 3 16 16 VAL VAL E . n E 1 4 ALA 4 17 17 ALA ALA E . n E 1 5 ALA 5 18 18 ALA ALA E . n E 1 6 ALA 6 19 19 ALA ALA E . n E 1 7 GLU 7 20 20 GLU GLU E . n E 1 8 LYS 8 21 21 LYS LYS E . n E 1 9 THR 9 22 22 THR THR E . n E 1 10 LYS 10 23 23 LYS LYS E . n F 2 1 VAL 1 37 37 VAL VAL G . n F 2 2 LEU 2 38 38 LEU LEU G . n F 2 3 TYR 3 39 39 TYR TYR G . n F 2 4 VAL 4 40 40 VAL VAL G . n F 2 5 GLY 5 41 41 GLY GLY G . n F 2 6 SER 6 42 42 SER SER G . n F 2 7 LYS 7 43 43 LYS LYS G . n F 2 8 THR 8 44 44 THR THR G . n F 2 9 LYS 9 45 45 LYS LYS G . n F 2 10 GLU 10 46 46 GLU GLU G . n F 2 11 GLY 11 47 47 GLY GLY G . n F 2 12 VAL 12 48 48 VAL VAL G . n F 2 13 VAL 13 49 49 VAL VAL G . n F 2 14 HIS 14 50 50 HIS HIS G . n F 2 15 GLY 15 51 51 GLY GLY G . n F 2 16 VAL 16 52 52 VAL VAL G . n F 2 17 ALA 17 53 53 ALA ALA G . n F 2 18 THR 18 54 54 THR THR G . n F 2 19 VAL 19 55 55 VAL VAL G . n F 2 20 ALA 20 56 56 ALA ALA G . n F 2 21 GLU 21 57 57 GLU GLU G . n F 2 22 LYS 22 58 58 LYS LYS G . n F 2 23 THR 23 59 59 THR THR G . n F 2 24 LYS 24 60 60 LYS LYS G . n F 2 25 GLU 25 61 61 GLU GLU G . n F 2 26 GLN 26 62 62 GLN GLN G . n F 2 27 VAL 27 63 63 VAL VAL G . n F 2 28 THR 28 64 64 THR THR G . n F 2 29 ASN 29 65 65 ASN ASN G . n F 2 30 VAL 30 66 66 VAL VAL G . n F 2 31 GLY 31 67 67 GLY GLY G . n F 2 32 GLY 32 68 68 GLY GLY G . n F 2 33 ALA 33 69 69 ALA ALA G . n F 2 34 VAL 34 70 70 VAL VAL G . n F 2 35 VAL 35 71 71 VAL VAL G . n F 2 36 THR 36 72 72 THR THR G . n F 2 37 GLY 37 73 73 GLY GLY G . n F 2 38 VAL 38 74 74 VAL VAL G . n F 2 39 THR 39 75 75 THR THR G . n F 2 40 ALA 40 76 76 ALA ALA G . n F 2 41 VAL 41 77 77 VAL VAL G . n F 2 42 ALA 42 78 78 ALA ALA G . n F 2 43 GLN 43 79 79 GLN GLN G . n F 2 44 LYS 44 80 80 LYS LYS G . n F 2 45 THR 45 81 81 THR THR G . n F 2 46 VAL 46 82 82 VAL VAL G . n F 2 47 GLU 47 83 83 GLU GLU G . n F 2 48 GLY 48 84 84 GLY GLY G . n F 2 49 ALA 49 85 85 ALA ALA G . n F 2 50 GLY 50 86 86 GLY GLY G . n F 2 51 SER 51 87 87 SER SER G . n F 2 52 ILE 52 88 88 ILE ILE G . n F 2 53 ALA 53 89 89 ALA ALA G . n F 2 54 ALA 54 90 90 ALA ALA G . n F 2 55 ALA 55 91 91 ALA ALA G . n F 2 56 THR 56 92 92 THR THR G . n F 2 57 GLY 57 93 93 GLY GLY G . n F 2 58 PHE 58 94 94 PHE PHE G . n F 2 59 VAL 59 95 95 VAL VAL G . n F 2 60 LYS 60 96 96 LYS LYS G . n F 2 61 LYS 61 97 97 LYS LYS G . n F 2 62 ASP 62 98 98 ASP ASP G . n F 2 63 GLN 63 99 99 GLN GLN G . n G 1 1 GLY 1 14 14 GLY GLY I . n G 1 2 VAL 2 15 15 VAL VAL I . n G 1 3 VAL 3 16 16 VAL VAL I . n G 1 4 ALA 4 17 17 ALA ALA I . n G 1 5 ALA 5 18 18 ALA ALA I . n G 1 6 ALA 6 19 19 ALA ALA I . n G 1 7 GLU 7 20 20 GLU GLU I . n G 1 8 LYS 8 21 21 LYS LYS I . n G 1 9 THR 9 22 22 THR THR I . n G 1 10 LYS 10 23 23 LYS LYS I . n H 2 1 VAL 1 37 37 VAL VAL L . n H 2 2 LEU 2 38 38 LEU LEU L . n H 2 3 TYR 3 39 39 TYR TYR L . n H 2 4 VAL 4 40 40 VAL VAL L . n H 2 5 GLY 5 41 41 GLY GLY L . n H 2 6 SER 6 42 42 SER SER L . n H 2 7 LYS 7 43 43 LYS LYS L . n H 2 8 THR 8 44 44 THR THR L . n H 2 9 LYS 9 45 45 LYS LYS L . n H 2 10 GLU 10 46 46 GLU GLU L . n H 2 11 GLY 11 47 47 GLY GLY L . n H 2 12 VAL 12 48 48 VAL VAL L . n H 2 13 VAL 13 49 49 VAL VAL L . n H 2 14 HIS 14 50 50 HIS HIS L . n H 2 15 GLY 15 51 51 GLY GLY L . n H 2 16 VAL 16 52 52 VAL VAL L . n H 2 17 ALA 17 53 53 ALA ALA L . n H 2 18 THR 18 54 54 THR THR L . n H 2 19 VAL 19 55 55 VAL VAL L . n H 2 20 ALA 20 56 56 ALA ALA L . n H 2 21 GLU 21 57 57 GLU GLU L . n H 2 22 LYS 22 58 58 LYS LYS L . n H 2 23 THR 23 59 59 THR THR L . n H 2 24 LYS 24 60 60 LYS LYS L . n H 2 25 GLU 25 61 61 GLU GLU L . n H 2 26 GLN 26 62 62 GLN GLN L . n H 2 27 VAL 27 63 63 VAL VAL L . n H 2 28 THR 28 64 64 THR THR L . n H 2 29 ASN 29 65 65 ASN ASN L . n H 2 30 VAL 30 66 66 VAL VAL L . n H 2 31 GLY 31 67 67 GLY GLY L . n H 2 32 GLY 32 68 68 GLY GLY L . n H 2 33 ALA 33 69 69 ALA ALA L . n H 2 34 VAL 34 70 70 VAL VAL L . n H 2 35 VAL 35 71 71 VAL VAL L . n H 2 36 THR 36 72 72 THR THR L . n H 2 37 GLY 37 73 73 GLY GLY L . n H 2 38 VAL 38 74 74 VAL VAL L . n H 2 39 THR 39 75 75 THR THR L . n H 2 40 ALA 40 76 76 ALA ALA L . n H 2 41 VAL 41 77 77 VAL VAL L . n H 2 42 ALA 42 78 78 ALA ALA L . n H 2 43 GLN 43 79 79 GLN GLN L . n H 2 44 LYS 44 80 80 LYS LYS L . n H 2 45 THR 45 81 81 THR THR L . n H 2 46 VAL 46 82 82 VAL VAL L . n H 2 47 GLU 47 83 83 GLU GLU L . n H 2 48 GLY 48 84 84 GLY GLY L . n H 2 49 ALA 49 85 85 ALA ALA L . n H 2 50 GLY 50 86 86 GLY GLY L . n H 2 51 SER 51 87 87 SER SER L . n H 2 52 ILE 52 88 88 ILE ILE L . n H 2 53 ALA 53 89 89 ALA ALA L . n H 2 54 ALA 54 90 90 ALA ALA L . n H 2 55 ALA 55 91 91 ALA ALA L . n H 2 56 THR 56 92 92 THR THR L . n H 2 57 GLY 57 93 93 GLY GLY L . n H 2 58 PHE 58 94 94 PHE PHE L . n H 2 59 VAL 59 95 95 VAL VAL L . n H 2 60 LYS 60 96 96 LYS LYS L . n H 2 61 LYS 61 97 97 LYS LYS L . n H 2 62 ASP 62 98 98 ASP ASP L . n H 2 63 GLN 63 99 99 GLN GLN L . n I 1 1 GLY 1 14 14 GLY GLY J . n I 1 2 VAL 2 15 15 VAL VAL J . n I 1 3 VAL 3 16 16 VAL VAL J . n I 1 4 ALA 4 17 17 ALA ALA J . n I 1 5 ALA 5 18 18 ALA ALA J . n I 1 6 ALA 6 19 19 ALA ALA J . n I 1 7 GLU 7 20 20 GLU GLU J . n I 1 8 LYS 8 21 21 LYS LYS J . n I 1 9 THR 9 22 22 THR THR J . n I 1 10 LYS 10 23 23 LYS LYS J . n J 2 1 VAL 1 37 37 VAL VAL M . n J 2 2 LEU 2 38 38 LEU LEU M . n J 2 3 TYR 3 39 39 TYR TYR M . n J 2 4 VAL 4 40 40 VAL VAL M . n J 2 5 GLY 5 41 41 GLY GLY M . n J 2 6 SER 6 42 42 SER SER M . n J 2 7 LYS 7 43 43 LYS LYS M . n J 2 8 THR 8 44 44 THR THR M . n J 2 9 LYS 9 45 45 LYS LYS M . n J 2 10 GLU 10 46 46 GLU GLU M . n J 2 11 GLY 11 47 47 GLY GLY M . n J 2 12 VAL 12 48 48 VAL VAL M . n J 2 13 VAL 13 49 49 VAL VAL M . n J 2 14 HIS 14 50 50 HIS HIS M . n J 2 15 GLY 15 51 51 GLY GLY M . n J 2 16 VAL 16 52 52 VAL VAL M . n J 2 17 ALA 17 53 53 ALA ALA M . n J 2 18 THR 18 54 54 THR THR M . n J 2 19 VAL 19 55 55 VAL VAL M . n J 2 20 ALA 20 56 56 ALA ALA M . n J 2 21 GLU 21 57 57 GLU GLU M . n J 2 22 LYS 22 58 58 LYS LYS M . n J 2 23 THR 23 59 59 THR THR M . n J 2 24 LYS 24 60 60 LYS LYS M . n J 2 25 GLU 25 61 61 GLU GLU M . n J 2 26 GLN 26 62 62 GLN GLN M . n J 2 27 VAL 27 63 63 VAL VAL M . n J 2 28 THR 28 64 64 THR THR M . n J 2 29 ASN 29 65 65 ASN ASN M . n J 2 30 VAL 30 66 66 VAL VAL M . n J 2 31 GLY 31 67 67 GLY GLY M . n J 2 32 GLY 32 68 68 GLY GLY M . n J 2 33 ALA 33 69 69 ALA ALA M . n J 2 34 VAL 34 70 70 VAL VAL M . n J 2 35 VAL 35 71 71 VAL VAL M . n J 2 36 THR 36 72 72 THR THR M . n J 2 37 GLY 37 73 73 GLY GLY M . n J 2 38 VAL 38 74 74 VAL VAL M . n J 2 39 THR 39 75 75 THR THR M . n J 2 40 ALA 40 76 76 ALA ALA M . n J 2 41 VAL 41 77 77 VAL VAL M . n J 2 42 ALA 42 78 78 ALA ALA M . n J 2 43 GLN 43 79 79 GLN GLN M . n J 2 44 LYS 44 80 80 LYS LYS M . n J 2 45 THR 45 81 81 THR THR M . n J 2 46 VAL 46 82 82 VAL VAL M . n J 2 47 GLU 47 83 83 GLU GLU M . n J 2 48 GLY 48 84 84 GLY GLY M . n J 2 49 ALA 49 85 85 ALA ALA M . n J 2 50 GLY 50 86 86 GLY GLY M . n J 2 51 SER 51 87 87 SER SER M . n J 2 52 ILE 52 88 88 ILE ILE M . n J 2 53 ALA 53 89 89 ALA ALA M . n J 2 54 ALA 54 90 90 ALA ALA M . n J 2 55 ALA 55 91 91 ALA ALA M . n J 2 56 THR 56 92 92 THR THR M . n J 2 57 GLY 57 93 93 GLY GLY M . n J 2 58 PHE 58 94 94 PHE PHE M . n J 2 59 VAL 59 95 95 VAL VAL M . n J 2 60 LYS 60 96 96 LYS LYS M . n J 2 61 LYS 61 97 97 LYS LYS M . n J 2 62 ASP 62 98 98 ASP ASP M . n J 2 63 GLN 63 99 99 GLN GLN M . n K 1 1 GLY 1 14 14 GLY GLY N . n K 1 2 VAL 2 15 15 VAL VAL N . n K 1 3 VAL 3 16 16 VAL VAL N . n K 1 4 ALA 4 17 17 ALA ALA N . n K 1 5 ALA 5 18 18 ALA ALA N . n K 1 6 ALA 6 19 19 ALA ALA N . n K 1 7 GLU 7 20 20 GLU GLU N . n K 1 8 LYS 8 21 21 LYS LYS N . n K 1 9 THR 9 22 22 THR THR N . n K 1 10 LYS 10 23 23 LYS LYS N . n L 2 1 VAL 1 37 37 VAL VAL O . n L 2 2 LEU 2 38 38 LEU LEU O . n L 2 3 TYR 3 39 39 TYR TYR O . n L 2 4 VAL 4 40 40 VAL VAL O . n L 2 5 GLY 5 41 41 GLY GLY O . n L 2 6 SER 6 42 42 SER SER O . n L 2 7 LYS 7 43 43 LYS LYS O . n L 2 8 THR 8 44 44 THR THR O . n L 2 9 LYS 9 45 45 LYS LYS O . n L 2 10 GLU 10 46 46 GLU GLU O . n L 2 11 GLY 11 47 47 GLY GLY O . n L 2 12 VAL 12 48 48 VAL VAL O . n L 2 13 VAL 13 49 49 VAL VAL O . n L 2 14 HIS 14 50 50 HIS HIS O . n L 2 15 GLY 15 51 51 GLY GLY O . n L 2 16 VAL 16 52 52 VAL VAL O . n L 2 17 ALA 17 53 53 ALA ALA O . n L 2 18 THR 18 54 54 THR THR O . n L 2 19 VAL 19 55 55 VAL VAL O . n L 2 20 ALA 20 56 56 ALA ALA O . n L 2 21 GLU 21 57 57 GLU GLU O . n L 2 22 LYS 22 58 58 LYS LYS O . n L 2 23 THR 23 59 59 THR THR O . n L 2 24 LYS 24 60 60 LYS LYS O . n L 2 25 GLU 25 61 61 GLU GLU O . n L 2 26 GLN 26 62 62 GLN GLN O . n L 2 27 VAL 27 63 63 VAL VAL O . n L 2 28 THR 28 64 64 THR THR O . n L 2 29 ASN 29 65 65 ASN ASN O . n L 2 30 VAL 30 66 66 VAL VAL O . n L 2 31 GLY 31 67 67 GLY GLY O . n L 2 32 GLY 32 68 68 GLY GLY O . n L 2 33 ALA 33 69 69 ALA ALA O . n L 2 34 VAL 34 70 70 VAL VAL O . n L 2 35 VAL 35 71 71 VAL VAL O . n L 2 36 THR 36 72 72 THR THR O . n L 2 37 GLY 37 73 73 GLY GLY O . n L 2 38 VAL 38 74 74 VAL VAL O . n L 2 39 THR 39 75 75 THR THR O . n L 2 40 ALA 40 76 76 ALA ALA O . n L 2 41 VAL 41 77 77 VAL VAL O . n L 2 42 ALA 42 78 78 ALA ALA O . n L 2 43 GLN 43 79 79 GLN GLN O . n L 2 44 LYS 44 80 80 LYS LYS O . n L 2 45 THR 45 81 81 THR THR O . n L 2 46 VAL 46 82 82 VAL VAL O . n L 2 47 GLU 47 83 83 GLU GLU O . n L 2 48 GLY 48 84 84 GLY GLY O . n L 2 49 ALA 49 85 85 ALA ALA O . n L 2 50 GLY 50 86 86 GLY GLY O . n L 2 51 SER 51 87 87 SER SER O . n L 2 52 ILE 52 88 88 ILE ILE O . n L 2 53 ALA 53 89 89 ALA ALA O . n L 2 54 ALA 54 90 90 ALA ALA O . n L 2 55 ALA 55 91 91 ALA ALA O . n L 2 56 THR 56 92 92 THR THR O . n L 2 57 GLY 57 93 93 GLY GLY O . n L 2 58 PHE 58 94 94 PHE PHE O . n L 2 59 VAL 59 95 95 VAL VAL O . n L 2 60 LYS 60 96 96 LYS LYS O . n L 2 61 LYS 61 97 97 LYS LYS O . n L 2 62 ASP 62 98 98 ASP ASP O . n L 2 63 GLN 63 99 99 GLN GLN O . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9JI8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JI8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9JI8 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0085 ? 3036 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.7304 ? 4092 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0597 ? 540 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0026 ? 504 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 10.0160 ? 1794 ? f_dihedral_angle_d ? ? # _struct.entry_id 9JI8 _struct.title 'Cryo-EM structure of alpha-synuclein-H21 fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JI8 _struct_keywords.text 'PROTEIN FIBRIL, Complex' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 1 ? J N N 2 ? K N N 1 ? L N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9JI8 9JI8 ? 1 ? 1 2 UNP SYUA_HUMAN P37840 ? 2 VLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 37 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JI8 D 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 2 2 9JI8 F 1 ? 63 ? P37840 37 ? 99 ? 37 99 3 1 9JI8 H 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 4 2 9JI8 K 1 ? 63 ? P37840 37 ? 99 ? 37 99 5 1 9JI8 E 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 6 2 9JI8 G 1 ? 63 ? P37840 37 ? 99 ? 37 99 7 1 9JI8 I 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 8 2 9JI8 L 1 ? 63 ? P37840 37 ? 99 ? 37 99 9 1 9JI8 J 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 10 2 9JI8 M 1 ? 63 ? P37840 37 ? 99 ? 37 99 11 1 9JI8 N 1 ? 10 ? 9JI8 14 ? 23 ? 14 23 12 2 9JI8 O 1 ? 63 ? P37840 37 ? 99 ? 37 99 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU B 10 ? ALA B 20 ? GLU F 46 ALA F 56 AA1 2 GLU F 10 ? ALA F 20 ? GLU G 46 ALA G 56 AA1 3 GLU J 10 ? ALA J 20 ? GLU M 46 ALA M 56 AA2 1 LYS B 24 ? VAL B 30 ? LYS F 60 VAL F 66 AA2 2 LYS F 24 ? VAL F 30 ? LYS G 60 VAL G 66 AA2 3 LYS J 24 ? VAL J 30 ? LYS M 60 VAL M 66 AA3 1 ALA B 33 ? THR B 36 ? ALA F 69 THR F 72 AA3 2 ALA F 33 ? THR F 36 ? ALA G 69 THR G 72 AA3 3 ALA J 33 ? THR J 36 ? ALA M 69 THR M 72 AA4 1 THR B 39 ? VAL B 46 ? THR F 75 VAL F 82 AA4 2 THR F 39 ? VAL F 46 ? THR G 75 VAL G 82 AA4 3 THR J 39 ? VAL J 46 ? THR M 75 VAL M 82 AA5 1 ALA B 55 ? THR B 56 ? ALA F 91 THR F 92 AA5 2 ALA F 55 ? THR F 56 ? ALA G 91 THR G 92 AA5 3 ALA J 55 ? THR J 56 ? ALA M 91 THR M 92 AA6 1 GLU D 10 ? ALA D 20 ? GLU K 46 ALA K 56 AA6 2 GLU H 10 ? ALA H 20 ? GLU L 46 ALA L 56 AA6 3 GLU L 10 ? ALA L 20 ? GLU O 46 ALA O 56 AA7 1 LYS D 24 ? VAL D 30 ? LYS K 60 VAL K 66 AA7 2 LYS H 24 ? VAL H 30 ? LYS L 60 VAL L 66 AA7 3 LYS L 24 ? VAL L 30 ? LYS O 60 VAL O 66 AA8 1 ALA D 33 ? THR D 36 ? ALA K 69 THR K 72 AA8 2 ALA H 33 ? THR H 36 ? ALA L 69 THR L 72 AA8 3 ALA L 33 ? THR L 36 ? ALA O 69 THR O 72 AA9 1 THR D 39 ? VAL D 46 ? THR K 75 VAL K 82 AA9 2 THR H 39 ? VAL H 46 ? THR L 75 VAL L 82 AA9 3 THR L 39 ? VAL L 46 ? THR O 75 VAL O 82 AB1 1 ALA D 55 ? THR D 56 ? ALA K 91 THR K 92 AB1 2 ALA H 55 ? THR H 56 ? ALA L 91 THR L 92 AB1 3 ALA L 55 ? THR L 56 ? ALA O 91 THR O 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL B 19 ? N VAL F 55 O ALA F 20 ? O ALA G 56 AA1 2 3 N VAL F 19 ? N VAL G 55 O ALA J 20 ? O ALA M 56 AA2 1 2 N THR B 28 ? N THR F 64 O VAL F 27 ? O VAL G 63 AA2 2 3 N THR F 28 ? N THR G 64 O VAL J 27 ? O VAL M 63 AA3 1 2 N VAL B 35 ? N VAL F 71 O VAL F 34 ? O VAL G 70 AA3 2 3 N VAL F 35 ? N VAL G 71 O VAL J 34 ? O VAL M 70 AA4 1 2 N VAL B 41 ? N VAL F 77 O ALA F 42 ? O ALA G 78 AA4 2 3 N VAL F 41 ? N VAL G 77 O ALA J 42 ? O ALA M 78 AA5 1 2 N ALA B 55 ? N ALA F 91 O THR F 56 ? O THR G 92 AA5 2 3 N ALA F 55 ? N ALA G 91 O THR J 56 ? O THR M 92 AA6 1 2 N VAL D 19 ? N VAL K 55 O ALA H 20 ? O ALA L 56 AA6 2 3 N VAL H 19 ? N VAL L 55 O ALA L 20 ? O ALA O 56 AA7 1 2 N GLN D 26 ? N GLN K 62 O VAL H 27 ? O VAL L 63 AA7 2 3 N THR H 28 ? N THR L 64 O VAL L 27 ? O VAL O 63 AA8 1 2 N VAL D 35 ? N VAL K 71 O VAL H 34 ? O VAL L 70 AA8 2 3 N VAL H 35 ? N VAL L 71 O VAL L 34 ? O VAL O 70 AA9 1 2 N VAL D 41 ? N VAL K 77 O ALA H 42 ? O ALA L 78 AA9 2 3 N VAL H 41 ? N VAL L 77 O ALA L 42 ? O ALA O 78 AB1 1 2 N ALA D 55 ? N ALA K 91 O THR H 56 ? O THR L 92 AB1 2 3 N ALA H 55 ? N ALA L 91 O THR L 56 ? O THR O 92 # _pdbx_entry_details.entry_id 9JI8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 M GLN 79 ? ? OG1 M THR 81 ? ? 2.15 2 1 OE1 F GLN 79 ? ? OG1 F THR 81 ? ? 2.15 3 1 OE1 L GLN 79 ? ? OG1 L THR 81 ? ? 2.15 4 1 OE1 O GLN 79 ? ? OG1 O THR 81 ? ? 2.15 5 1 OE1 K GLN 79 ? ? OG1 K THR 81 ? ? 2.15 6 1 OE1 G GLN 79 ? ? OG1 G THR 81 ? ? 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE F 88 ? ? -127.20 -55.98 2 1 LYS F 97 ? ? -101.13 62.83 3 1 ILE K 88 ? ? -127.17 -56.02 4 1 LYS K 97 ? ? -101.15 62.77 5 1 ILE G 88 ? ? -127.18 -56.07 6 1 LYS G 97 ? ? -101.16 62.79 7 1 ILE L 88 ? ? -127.19 -56.07 8 1 LYS L 97 ? ? -101.16 62.82 9 1 ILE M 88 ? ? -127.19 -56.08 10 1 LYS M 97 ? ? -101.14 62.83 11 1 ILE O 88 ? ? -127.19 -56.03 12 1 LYS O 97 ? ? -101.14 62.82 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9JI8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9JI8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.85 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 61085 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Cryo-EM structure of alpha-synuclein-H21 fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9JI8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9JI8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9JI8 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 PHE N N N N 186 PHE CA C N S 187 PHE C C N N 188 PHE O O N N 189 PHE CB C N N 190 PHE CG C Y N 191 PHE CD1 C Y N 192 PHE CD2 C Y N 193 PHE CE1 C Y N 194 PHE CE2 C Y N 195 PHE CZ C Y N 196 PHE OXT O N N 197 PHE H H N N 198 PHE H2 H N N 199 PHE HA H N N 200 PHE HB2 H N N 201 PHE HB3 H N N 202 PHE HD1 H N N 203 PHE HD2 H N N 204 PHE HE1 H N N 205 PHE HE2 H N N 206 PHE HZ H N N 207 PHE HXT H N N 208 SER N N N N 209 SER CA C N S 210 SER C C N N 211 SER O O N N 212 SER CB C N N 213 SER OG O N N 214 SER OXT O N N 215 SER H H N N 216 SER H2 H N N 217 SER HA H N N 218 SER HB2 H N N 219 SER HB3 H N N 220 SER HG H N N 221 SER HXT H N N 222 THR N N N N 223 THR CA C N S 224 THR C C N N 225 THR O O N N 226 THR CB C N R 227 THR OG1 O N N 228 THR CG2 C N N 229 THR OXT O N N 230 THR H H N N 231 THR H2 H N N 232 THR HA H N N 233 THR HB H N N 234 THR HG1 H N N 235 THR HG21 H N N 236 THR HG22 H N N 237 THR HG23 H N N 238 THR HXT H N N 239 TYR N N N N 240 TYR CA C N S 241 TYR C C N N 242 TYR O O N N 243 TYR CB C N N 244 TYR CG C Y N 245 TYR CD1 C Y N 246 TYR CD2 C Y N 247 TYR CE1 C Y N 248 TYR CE2 C Y N 249 TYR CZ C Y N 250 TYR OH O N N 251 TYR OXT O N N 252 TYR H H N N 253 TYR H2 H N N 254 TYR HA H N N 255 TYR HB2 H N N 256 TYR HB3 H N N 257 TYR HD1 H N N 258 TYR HD2 H N N 259 TYR HE1 H N N 260 TYR HE2 H N N 261 TYR HH H N N 262 TYR HXT H N N 263 VAL N N N N 264 VAL CA C N S 265 VAL C C N N 266 VAL O O N N 267 VAL CB C N N 268 VAL CG1 C N N 269 VAL CG2 C N N 270 VAL OXT O N N 271 VAL H H N N 272 VAL H2 H N N 273 VAL HA H N N 274 VAL HB H N N 275 VAL HG11 H N N 276 VAL HG12 H N N 277 VAL HG13 H N N 278 VAL HG21 H N N 279 VAL HG22 H N N 280 VAL HG23 H N N 281 VAL HXT H N N 282 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 PHE N CA sing N N 177 PHE N H sing N N 178 PHE N H2 sing N N 179 PHE CA C sing N N 180 PHE CA CB sing N N 181 PHE CA HA sing N N 182 PHE C O doub N N 183 PHE C OXT sing N N 184 PHE CB CG sing N N 185 PHE CB HB2 sing N N 186 PHE CB HB3 sing N N 187 PHE CG CD1 doub Y N 188 PHE CG CD2 sing Y N 189 PHE CD1 CE1 sing Y N 190 PHE CD1 HD1 sing N N 191 PHE CD2 CE2 doub Y N 192 PHE CD2 HD2 sing N N 193 PHE CE1 CZ doub Y N 194 PHE CE1 HE1 sing N N 195 PHE CE2 CZ sing Y N 196 PHE CE2 HE2 sing N N 197 PHE CZ HZ sing N N 198 PHE OXT HXT sing N N 199 SER N CA sing N N 200 SER N H sing N N 201 SER N H2 sing N N 202 SER CA C sing N N 203 SER CA CB sing N N 204 SER CA HA sing N N 205 SER C O doub N N 206 SER C OXT sing N N 207 SER CB OG sing N N 208 SER CB HB2 sing N N 209 SER CB HB3 sing N N 210 SER OG HG sing N N 211 SER OXT HXT sing N N 212 THR N CA sing N N 213 THR N H sing N N 214 THR N H2 sing N N 215 THR CA C sing N N 216 THR CA CB sing N N 217 THR CA HA sing N N 218 THR C O doub N N 219 THR C OXT sing N N 220 THR CB OG1 sing N N 221 THR CB CG2 sing N N 222 THR CB HB sing N N 223 THR OG1 HG1 sing N N 224 THR CG2 HG21 sing N N 225 THR CG2 HG22 sing N N 226 THR CG2 HG23 sing N N 227 THR OXT HXT sing N N 228 TYR N CA sing N N 229 TYR N H sing N N 230 TYR N H2 sing N N 231 TYR CA C sing N N 232 TYR CA CB sing N N 233 TYR CA HA sing N N 234 TYR C O doub N N 235 TYR C OXT sing N N 236 TYR CB CG sing N N 237 TYR CB HB2 sing N N 238 TYR CB HB3 sing N N 239 TYR CG CD1 doub Y N 240 TYR CG CD2 sing Y N 241 TYR CD1 CE1 sing Y N 242 TYR CD1 HD1 sing N N 243 TYR CD2 CE2 doub Y N 244 TYR CD2 HD2 sing N N 245 TYR CE1 CZ doub Y N 246 TYR CE1 HE1 sing N N 247 TYR CE2 CZ sing Y N 248 TYR CE2 HE2 sing N N 249 TYR CZ OH sing N N 250 TYR OH HH sing N N 251 TYR OXT HXT sing N N 252 VAL N CA sing N N 253 VAL N H sing N N 254 VAL N H2 sing N N 255 VAL CA C sing N N 256 VAL CA CB sing N N 257 VAL CA HA sing N N 258 VAL C O doub N N 259 VAL C OXT sing N N 260 VAL CB CG1 sing N N 261 VAL CB CG2 sing N N 262 VAL CB HB sing N N 263 VAL CG1 HG11 sing N N 264 VAL CG1 HG12 sing N N 265 VAL CG1 HG13 sing N N 266 VAL CG2 HG21 sing N N 267 VAL CG2 HG22 sing N N 268 VAL CG2 HG23 sing N N 269 VAL OXT HXT sing N N 270 # _em_admin.current_status REL _em_admin.deposition_date 2024-09-11 _em_admin.deposition_site PDBJ _em_admin.entry_id 9JI8 _em_admin.last_update 2025-09-17 _em_admin.map_release_date 2025-09-17 _em_admin.title 'Cryo-EM structure of alpha-synuclein-H21 fibril' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.64 _em_helical_entity.axial_rise_per_subunit 2.41 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9JI8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #