HEADER VIRAL PROTEIN/RNA 15-SEP-24 9JKD TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS POLYMYCOVIRUS 1 PLOYMERASE TITLE 2 ELONGATION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (30-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RNA (5'-R(P*GP*GP*AP*UP*AP*UP*AP*AP*U)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS TETRAMYCOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 2849587; SOURCE 4 GENE: RDRP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE-RNA, ELONGATION, VIRAL PROTEIN/RNA, VIRAL PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.JIA,P.GONG REVDAT 2 30-APR-25 9JKD 1 JRNL REVDAT 1 26-MAR-25 9JKD 0 JRNL AUTH H.JIA,S.LIU,G.RAO,Q.LIU,J.WU,S.CAO,P.GONG JRNL TITL AN EVOLUTIONARILY UNIQUE VIRAL RDRP SUGGESTS A COMMON JRNL TITL 2 DUAL-FUNCTION FEATURE OF THE PRIMING ELEMENT. JRNL REF SCI ADV V. 11 V9640 2025 JRNL REFN ESSN 2375-2548 JRNL PMID 40249801 JRNL DOI 10.1126/SCIADV.ADV9640 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3200 - 5.7500 0.98 2790 140 0.1650 0.1810 REMARK 3 2 5.7500 - 4.5700 1.00 2721 126 0.1486 0.1657 REMARK 3 3 4.5700 - 4.0000 1.00 2644 157 0.1409 0.1773 REMARK 3 4 4.0000 - 3.6300 1.00 2633 155 0.1564 0.1926 REMARK 3 5 3.6300 - 3.3700 1.00 2623 149 0.1725 0.1925 REMARK 3 6 3.3700 - 3.1800 1.00 2617 128 0.1881 0.2543 REMARK 3 7 3.1800 - 3.0200 1.00 2629 133 0.1972 0.2828 REMARK 3 8 3.0200 - 2.8900 1.00 2598 140 0.1939 0.2669 REMARK 3 9 2.8900 - 2.7700 1.00 2621 141 0.1987 0.2358 REMARK 3 10 2.7700 - 2.6800 1.00 2602 119 0.1900 0.2378 REMARK 3 11 2.6800 - 2.5900 1.00 2616 132 0.1855 0.2697 REMARK 3 12 2.5900 - 2.5200 1.00 2567 144 0.1966 0.2686 REMARK 3 13 2.5200 - 2.4500 1.00 2596 134 0.1855 0.2719 REMARK 3 14 2.4500 - 2.3900 1.00 2578 141 0.1926 0.2424 REMARK 3 15 2.3900 - 2.3400 1.00 2589 142 0.2073 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1300030424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 23.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CYRO-EM STRUCTURE OF AFUPMV-1 N85 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM ACETATE, PENTAERYTHRITOL REMARK 280 PROPOXYLATE (5/4 PO/OH), EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.47100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.13500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.70650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.13500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.23550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.70650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.23550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.47100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 84 REMARK 465 ALA A 111 REMARK 465 LYS A 112 REMARK 465 ASN A 113 REMARK 465 ALA A 114 REMARK 465 SER A 115 REMARK 465 GLU A 116 REMARK 465 LEU A 117 REMARK 465 GLY A 764 REMARK 465 SER A 765 REMARK 465 SER A 766 REMARK 465 SER A 767 REMARK 465 HIS A 768 REMARK 465 HIS A 769 REMARK 465 HIS A 770 REMARK 465 HIS A 771 REMARK 465 HIS A 772 REMARK 465 HIS A 773 REMARK 465 G B 782 REMARK 465 A B 783 REMARK 465 G B 784 REMARK 465 A B 785 REMARK 465 U B 786 REMARK 465 G B 787 REMARK 465 A B 788 REMARK 465 A B 789 REMARK 465 A B 790 REMARK 465 A B 791 REMARK 465 U B 792 REMARK 465 C B 793 REMARK 465 U B 794 REMARK 465 C B 795 REMARK 465 C B 796 REMARK 465 A B 797 REMARK 465 U B 798 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 262 CG OD1 OD2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 337 CG1 CG2 CD1 REMARK 470 VAL A 338 CG1 CG2 REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 GLN A 343 CG CD OE1 NE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 ASP A 574 CG OD1 OD2 REMARK 470 LYS A 667 CG CD CE NZ REMARK 470 ASP A 714 CG OD1 OD2 REMARK 470 GLU A 732 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A C 897 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 87 -29.37 78.23 REMARK 500 HIS A 219 -167.10 -161.79 REMARK 500 ASP A 409 -165.13 -74.39 REMARK 500 PRO A 473 -9.79 -58.56 REMARK 500 CYS A 483 144.07 67.65 REMARK 500 SER A 486 109.49 -36.90 REMARK 500 ARG A 709 80.00 -101.68 REMARK 500 HIS A 719 -130.61 48.28 REMARK 500 SER A 723 -84.83 -117.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1275 DISTANCE = 6.21 ANGSTROMS DBREF1 9JKD A 85 763 UNP A0A0H5BRR0_9VIRU DBREF2 9JKD A A0A0H5BRR0 85 763 DBREF 9JKD B 780 809 PDB 9JKD 9JKD 780 809 DBREF 9JKD C 893 901 PDB 9JKD 9JKD 893 901 SEQADV 9JKD MET A 84 UNP A0A0H5BRR INITIATING METHIONINE SEQADV 9JKD GLY A 764 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD SER A 765 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD SER A 766 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD SER A 767 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 768 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 769 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 770 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 771 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 772 UNP A0A0H5BRR EXPRESSION TAG SEQADV 9JKD HIS A 773 UNP A0A0H5BRR EXPRESSION TAG SEQRES 1 A 690 MET GLN ALA ARG ALA ARG ALA PHE ARG LEU LYS SER TYR SEQRES 2 A 690 ALA ASP GLY ASP LEU LEU ARG GLU LEU ARG GLN PHE ASP SEQRES 3 A 690 GLY ALA LYS ASN ALA SER GLU LEU GLY PRO ARG ALA PHE SEQRES 4 A 690 VAL ARG ASP SER HIS ARG LEU ASP ALA ALA VAL GLU LYS SEQRES 5 A 690 ALA SER LYS LEU THR ASP PRO THR PHE HIS ILE SER GLN SEQRES 6 A 690 TYR GLN LEU PRO HIS PRO TYR SER PHE GLY GLY GLY PRO SEQRES 7 A 690 PRO ASN PRO GLU ARG PRO LEU THR ALA PRO LEU ILE SER SEQRES 8 A 690 ALA ILE ASN LYS VAL SER GLN ARG THR ARG ASP PRO VAL SEQRES 9 A 690 GLY TYR ARG LYS ARG ALA LYS GLU SER ILE ASP LEU GLY SEQRES 10 A 690 ASP PHE THR THR HIS ASP PRO ASP THR LEU HIS PRO ARG SEQRES 11 A 690 PHE LEU GLU TYR VAL HIS GLU ARG THR ARG SER VAL ASP SEQRES 12 A 690 GLY PRO THR ASP ASP ALA MET ARG ALA ALA GLN THR VAL SEQRES 13 A 690 PHE ALA ARG LEU TRP ARG ARG LYS GLY CYS LYS VAL LYS SEQRES 14 A 690 ALA ARG SER LEU SER ASP ALA GLN PRO ASP ASN LEU LEU SEQRES 15 A 690 ALA ILE ILE LYS LYS GLY SER PRO GLY GLU TYR ARG SER SEQRES 16 A 690 LEU GLY ALA GLU ASP ARG ARG ASP PRO ARG LEU ILE ALA SEQRES 17 A 690 THR MET SER SER SER LEU LEU ARG TYR ALA SER ALA GLY SEQRES 18 A 690 VAL GLN VAL ALA ARG GLY ARG PRO PRO PRO GLY TRP VAL SEQRES 19 A 690 ASP THR THR THR GLN VAL THR LEU THR PHE GLY LYS ARG SEQRES 20 A 690 GLU PRO LYS ALA ALA LYS ILE VAL ASP GLY VAL ARG GLN SEQRES 21 A 690 ALA PRO VAL PRO ARG PHE ILE PHE ASN LEU SER PRO VAL SEQRES 22 A 690 ASN TYR ALA LEU ALA SER PHE LEU HIS TYR ASP ILE SER SEQRES 23 A 690 HIS PHE LEU MET ASP ASN ASP PRO THR HIS GLY PRO GLY SEQRES 24 A 690 PHE GLY PRO GLY ARG GLY ARG ALA ARG LYS PHE MET ASP SEQRES 25 A 690 LEU VAL GLU ARG ALA PHE ASP GLY ARG PHE SER THR PRO SEQRES 26 A 690 ASP GLY ALA ARG LEU ILE MET SER ASP ILE THR LYS TRP SEQRES 27 A 690 ASP ALA ASN MET CYS GLU ALA LEU ILE LYS TYR SER ILE SEQRES 28 A 690 ASP LEU LEU GLU ASP ALA VAL ASP LYS SER ALA LEU SER SEQRES 29 A 690 PRO GLU GLY LEU ALA THR ARG GLY LEU MET TYR ARG VAL SEQRES 30 A 690 ALA ARG ARG GLN LEU LEU GLU LYS LEU VAL GLU HIS PRO SEQRES 31 A 690 ALA GLY TYR PHE VAL LYS LEU TYR GLY CYS MET PRO SER SEQRES 32 A 690 GLY SER PHE TYR THR SER LEU VAL ASN THR THR GLY ASN SEQRES 33 A 690 ASN LEU LEU VAL ILE GLY HIS ALA ILE ALA ARG ALA VAL SEQRES 34 A 690 GLU GLU THR SER LEU THR HIS HIS GLY ALA ALA GLU LEU SEQRES 35 A 690 LEU ALA ASP ALA VAL ASP GLY THR LEU ILE SER TYR GLY SEQRES 36 A 690 ASP ASN GLN LEU PHE SER GLU HIS LEU PHE SER VAL LEU SEQRES 37 A 690 GLY LEU ALA TYR ASP PRO GLU LYS HIS ALA GLU PHE LEU SEQRES 38 A 690 ALA ARG PHE GLY MET LYS LEU LYS VAL ASP GLU THR GLU SEQRES 39 A 690 VAL THR VAL LYS LEU GLY ARG VAL ARG PHE CYS SER ARG SEQRES 40 A 690 SER LEU VAL ARG THR PRO HIS GLY LEU LEU ILE THR ARG SEQRES 41 A 690 SER HIS ASN SER LEU PHE ALA LYS LEU ALA GLY ARG PRO SEQRES 42 A 690 ARG HIS ASP PRO VAL VAL ASP LYS LEU TYR VAL ARG ALA SEQRES 43 A 690 MET MET VAL ASP HIS MET GLY THR ASP PRO ILE VAL TYR SEQRES 44 A 690 ALA ILE LEU ASN GLU ILE ASP ARG SER LEU ASN VAL SER SEQRES 45 A 690 LEU GLU ALA ALA GLY LEU THR ASP ALA ALA LYS LYS VAL SEQRES 46 A 690 LEU GLU ASP THR ALA GLN SER MET PHE GLY ASN ARG GLU SEQRES 47 A 690 GLN ASP ALA LEU LEU ALA VAL TYR ARG ALA LEU SER GLU SEQRES 48 A 690 THR VAL ILE ASP ARG ARG ALA LEU LEU SER LEU HIS THR SEQRES 49 A 690 PRO ARG ASP GLY ASP HIS ASP PRO GLY ARG LEU HIS THR SEQRES 50 A 690 SER VAL SER THR GLY MET HIS LEU PHE THR GLY GLU LEU SEQRES 51 A 690 THR PRO ALA ALA GLN TRP ALA TYR GLU CYS THR VAL GLU SEQRES 52 A 690 LYS TRP CYS GLN TYR LEU HIS ASP THR ASP GLN GLU GLY SEQRES 53 A 690 VAL MET PHE ASP GLY SER SER SER HIS HIS HIS HIS HIS SEQRES 54 A 690 HIS SEQRES 1 B 30 G G G A G A U G A A A A U SEQRES 2 B 30 C U C C A U A G A U U A U SEQRES 3 B 30 A U C C SEQRES 1 C 9 G G A U A U A A U HET GOL A 801 6 HET GOL A 802 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *440(H2 O) HELIX 1 AA1 ALA A 97 ARG A 106 1 10 HELIX 2 AA2 GLN A 107 ASP A 109 5 3 HELIX 3 AA3 ASP A 125 ARG A 128 5 4 HELIX 4 AA4 LEU A 129 LYS A 138 1 10 HELIX 5 AA5 LEU A 168 GLN A 181 1 14 HELIX 6 AA6 ASP A 185 LEU A 199 1 15 HELIX 7 AA7 ASP A 206 LEU A 215 1 10 HELIX 8 AA8 GLU A 216 VAL A 218 5 3 HELIX 9 AA9 ASP A 226 LYS A 247 1 22 HELIX 10 AB1 SER A 255 ALA A 259 5 5 HELIX 11 AB2 GLN A 260 LEU A 265 1 6 HELIX 12 AB3 ALA A 266 ILE A 268 5 3 HELIX 13 AB4 PRO A 273 GLY A 280 5 8 HELIX 14 AB5 ASP A 286 ARG A 299 1 14 HELIX 15 AB6 ARG A 299 ARG A 309 1 11 HELIX 16 AB7 GLY A 315 THR A 320 1 6 HELIX 17 AB8 SER A 354 ASP A 376 1 23 HELIX 18 AB9 ALA A 390 ASP A 402 1 13 HELIX 19 AC1 LYS A 420 MET A 425 1 6 HELIX 20 AC2 CYS A 426 ALA A 440 1 15 HELIX 21 AC3 SER A 447 LEU A 466 1 20 HELIX 22 AC4 TYR A 490 THR A 515 1 26 HELIX 23 AC5 THR A 518 VAL A 530 1 13 HELIX 24 AC6 GLU A 545 VAL A 550 1 6 HELIX 25 AC7 ASP A 556 ARG A 566 1 11 HELIX 26 AC8 LYS A 572 THR A 576 5 5 HELIX 27 AC9 LYS A 581 VAL A 585 5 5 HELIX 28 AD1 SER A 604 ARG A 615 1 12 HELIX 29 AD2 ASP A 619 MET A 635 1 17 HELIX 30 AD3 ASP A 638 LEU A 652 1 15 HELIX 31 AD4 THR A 662 GLY A 678 1 17 HELIX 32 AD5 GLU A 681 LEU A 692 1 12 HELIX 33 AD6 SER A 693 THR A 695 5 3 HELIX 34 AD7 ASP A 698 SER A 704 1 7 HELIX 35 AD8 LEU A 705 THR A 707 5 3 HELIX 36 AD9 THR A 734 GLU A 742 1 9 HELIX 37 AE1 THR A 744 ASP A 756 1 13 HELIX 38 AE2 GLN A 757 MET A 761 5 5 SHEET 1 AA1 2 PHE A 91 ARG A 92 0 SHEET 2 AA1 2 TYR A 149 GLN A 150 -1 O GLN A 150 N PHE A 91 SHEET 1 AA2 5 PHE A 144 ILE A 146 0 SHEET 2 AA2 5 TYR A 476 TYR A 481 -1 O LYS A 479 N HIS A 145 SHEET 3 AA2 5 GLU A 467 HIS A 472 -1 N VAL A 470 O VAL A 478 SHEET 4 AA2 5 VAL A 323 GLY A 328 1 N THR A 324 O GLU A 471 SHEET 5 AA2 5 PHE A 349 ASN A 352 -1 O ASN A 352 N LEU A 325 SHEET 1 AA3 2 GLY A 200 THR A 203 0 SHEET 2 AA3 2 GLU A 331 ALA A 334 -1 O GLU A 331 N THR A 203 SHEET 1 AA4 2 LYS A 336 VAL A 338 0 SHEET 2 AA4 2 VAL A 341 GLN A 343 -1 O GLN A 343 N LYS A 336 SHEET 1 AA5 4 LEU A 534 TYR A 537 0 SHEET 2 AA5 4 ASN A 540 SER A 544 -1 O ASN A 540 N TYR A 537 SHEET 3 AA5 4 LEU A 413 MET A 415 -1 N ILE A 414 O PHE A 543 SHEET 4 AA5 4 GLU A 577 THR A 579 -1 O THR A 579 N LEU A 413 SHEET 1 AA6 2 SER A 591 THR A 595 0 SHEET 2 AA6 2 GLY A 598 THR A 602 -1 O LEU A 600 N VAL A 593 CRYST1 118.270 118.270 136.942 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007302 0.00000 CONECT 5681 5682 5683 CONECT 5682 5681 CONECT 5683 5681 5684 5685 CONECT 5684 5683 CONECT 5685 5683 5686 CONECT 5686 5685 CONECT 5687 5688 5689 CONECT 5688 5687 CONECT 5689 5687 5690 5691 CONECT 5690 5689 CONECT 5691 5689 5692 CONECT 5692 5691 MASTER 349 0 2 38 17 0 0 6 6103 3 12 58 END