HEADER VIRUS 19-SEP-24 9JLP TITLE CRYO-EM STRUCTURE OF FULL PARTICLE OF PROKARYOTIC DSRNA VIRUS PHIYY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE PROCAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INNER CAPSID PROTEIN P1A; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUCLEOCAPSID SHELL PROTEIN; COMPND 7 CHAIN: C, D, E, F; COMPND 8 SYNONYM: OUTER CAPSID PROTEIN P8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHIYY; SOURCE 3 ORGANISM_TAXID: 1852644; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHIYY; SOURCE 6 ORGANISM_TAXID: 1852644 KEYWDS CRYO-EM, DSRNA VIRUS, FULL PARTICLE, CAPSID PROTEIN, GENOME PACKAGE, KEYWDS 2 VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR K.W.MENG,C.X.CUI,Y.N.HUYAN,G.MENG REVDAT 1 01-APR-26 9JLP 0 JRNL AUTH Y.N.HUYAN,K.W.MENG,C.X.CUI,G.MENG JRNL TITL STRUCTURE ASSEMBLY AND GENOME PACKAGING OF A PROKARYOTIC JRNL TITL 2 DOUBLE-STRAND RNA VIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 18004 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9JLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 27-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1300051525. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PSEUDOMONAS PHAGE PHIYY REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 IS (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 5000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 519 REMARK 465 TYR A 520 REMARK 465 VAL A 521 REMARK 465 LEU A 522 REMARK 465 MET A 523 REMARK 465 LEU A 524 REMARK 465 ALA A 525 REMARK 465 ARG A 526 REMARK 465 ALA A 527 REMARK 465 LEU A 528 REMARK 465 LEU A 529 REMARK 465 THR A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 532 REMARK 465 MET A 533 REMARK 465 THR A 534 REMARK 465 ARG A 535 REMARK 465 VAL A 536 REMARK 465 GLY A 537 REMARK 465 SER A 538 REMARK 465 VAL A 539 REMARK 465 PRO A 540 REMARK 465 VAL A 541 REMARK 465 SER A 542 REMARK 465 ASN A 543 REMARK 465 ASN A 544 REMARK 465 ALA A 545 REMARK 465 ASN A 546 REMARK 465 THR A 547 REMARK 465 GLU A 548 REMARK 465 ASP A 801 REMARK 465 SER A 802 REMARK 465 ASN A 803 REMARK 465 ASN A 804 REMARK 465 ASN A 805 REMARK 465 MET C 1 REMARK 465 TYR C 2 REMARK 465 PRO C 3 REMARK 465 ALA C 4 REMARK 465 VAL C 5 REMARK 465 ALA C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 LEU C 9 REMARK 465 ARG C 10 REMARK 465 ALA C 11 REMARK 465 ALA C 12 REMARK 465 PRO C 13 REMARK 465 GLY C 14 REMARK 465 ALA C 15 REMARK 465 VAL C 16 REMARK 465 LYS C 17 REMARK 465 LEU C 18 REMARK 465 LEU C 19 REMARK 465 ALA C 20 REMARK 465 THR C 21 REMARK 465 ARG C 22 REMARK 465 LEU C 23 REMARK 465 GLY C 24 REMARK 465 VAL C 25 REMARK 465 PRO C 26 REMARK 465 SER C 27 REMARK 465 SER C 28 REMARK 465 VAL C 29 REMARK 465 SER C 30 REMARK 465 GLY C 31 REMARK 465 VAL C 32 REMARK 465 LEU C 33 REMARK 465 ASN C 34 REMARK 465 PHE C 35 REMARK 465 ALA C 36 REMARK 465 LYS C 37 REMARK 465 ALA C 38 REMARK 465 ASN C 39 REMARK 465 PRO C 40 REMARK 465 THR C 41 REMARK 465 THR C 42 REMARK 465 PHE C 43 REMARK 465 MET C 44 REMARK 465 LEU C 45 REMARK 465 ALA C 46 REMARK 465 ALA C 47 REMARK 465 LYS C 48 REMARK 465 GLU C 49 REMARK 465 THR C 50 REMARK 465 PHE C 51 REMARK 465 ASP C 52 REMARK 465 GLN C 53 REMARK 465 GLY C 54 REMARK 465 VAL C 55 REMARK 465 ALA C 56 REMARK 465 ILE C 57 REMARK 465 TYR C 58 REMARK 465 ASP C 59 REMARK 465 LEU C 60 REMARK 465 LEU C 61 REMARK 465 GLY C 62 REMARK 465 GLU C 63 REMARK 465 ALA C 64 REMARK 465 ILE C 65 REMARK 465 GLY C 66 REMARK 465 GLU C 67 REMARK 465 VAL C 68 REMARK 465 GLU C 69 REMARK 465 GLN C 70 REMARK 465 SER C 71 REMARK 465 ALA C 72 REMARK 465 ASN C 73 REMARK 465 ALA C 74 REMARK 465 GLN C 75 REMARK 465 LYS C 76 REMARK 465 ILE C 77 REMARK 465 SER C 78 REMARK 465 PHE C 79 REMARK 465 LYS C 80 REMARK 465 GLN C 81 REMARK 465 ILE C 82 REMARK 465 ASP C 83 REMARK 465 SER C 84 REMARK 465 VAL C 85 REMARK 465 GLY C 86 REMARK 465 GLY C 87 REMARK 465 ASN C 88 REMARK 465 VAL C 89 REMARK 465 LEU C 90 REMARK 465 ASP C 91 REMARK 465 MET D 1 REMARK 465 TYR D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 VAL D 5 REMARK 465 ALA D 6 REMARK 465 ALA D 7 REMARK 465 ALA D 8 REMARK 465 LEU D 9 REMARK 465 ARG D 10 REMARK 465 ALA D 11 REMARK 465 ALA D 12 REMARK 465 PRO D 13 REMARK 465 GLY D 14 REMARK 465 ALA D 15 REMARK 465 VAL D 16 REMARK 465 LYS D 17 REMARK 465 LEU D 18 REMARK 465 LEU D 19 REMARK 465 ALA D 20 REMARK 465 THR D 21 REMARK 465 ARG D 22 REMARK 465 LEU D 23 REMARK 465 GLY D 24 REMARK 465 VAL D 25 REMARK 465 PRO D 26 REMARK 465 SER D 27 REMARK 465 SER D 28 REMARK 465 VAL D 29 REMARK 465 SER D 30 REMARK 465 GLY D 31 REMARK 465 VAL D 32 REMARK 465 LEU D 33 REMARK 465 ASN D 34 REMARK 465 PHE D 35 REMARK 465 ALA D 36 REMARK 465 LYS D 37 REMARK 465 ALA D 38 REMARK 465 ASN D 39 REMARK 465 PRO D 40 REMARK 465 THR D 41 REMARK 465 THR D 42 REMARK 465 PHE D 43 REMARK 465 MET D 44 REMARK 465 LEU D 45 REMARK 465 ALA D 46 REMARK 465 ALA D 47 REMARK 465 LYS D 48 REMARK 465 GLU D 49 REMARK 465 THR D 50 REMARK 465 PHE D 51 REMARK 465 ASP D 52 REMARK 465 GLN D 53 REMARK 465 GLY D 54 REMARK 465 VAL D 55 REMARK 465 ALA D 56 REMARK 465 ILE D 57 REMARK 465 TYR D 58 REMARK 465 ASP D 59 REMARK 465 LEU D 60 REMARK 465 LEU D 61 REMARK 465 GLY D 62 REMARK 465 GLU D 63 REMARK 465 ALA D 64 REMARK 465 ILE D 65 REMARK 465 GLY D 66 REMARK 465 GLU D 67 REMARK 465 VAL D 68 REMARK 465 GLU D 69 REMARK 465 GLN D 70 REMARK 465 SER D 71 REMARK 465 ALA D 72 REMARK 465 ASN D 73 REMARK 465 ALA D 74 REMARK 465 GLN D 75 REMARK 465 LYS D 76 REMARK 465 ILE D 77 REMARK 465 SER D 78 REMARK 465 PHE D 79 REMARK 465 LYS D 80 REMARK 465 GLN D 81 REMARK 465 ILE D 82 REMARK 465 ASP D 83 REMARK 465 SER D 84 REMARK 465 VAL D 85 REMARK 465 GLY D 86 REMARK 465 GLY D 87 REMARK 465 ASN D 88 REMARK 465 VAL D 89 REMARK 465 LEU D 90 REMARK 465 ASP D 91 REMARK 465 GLN D 92 REMARK 465 GLY D 141 REMARK 465 ARG D 142 REMARK 465 ILE D 143 REMARK 465 MET E 1 REMARK 465 TYR E 2 REMARK 465 PRO E 3 REMARK 465 ALA E 4 REMARK 465 VAL E 5 REMARK 465 ALA E 6 REMARK 465 ALA E 7 REMARK 465 ALA E 8 REMARK 465 LEU E 9 REMARK 465 ARG E 10 REMARK 465 ALA E 11 REMARK 465 ALA E 12 REMARK 465 PRO E 13 REMARK 465 GLY E 14 REMARK 465 ALA E 15 REMARK 465 VAL E 16 REMARK 465 LYS E 17 REMARK 465 LEU E 18 REMARK 465 LEU E 19 REMARK 465 ALA E 20 REMARK 465 THR E 21 REMARK 465 ARG E 22 REMARK 465 LEU E 23 REMARK 465 GLY E 24 REMARK 465 VAL E 25 REMARK 465 PRO E 26 REMARK 465 SER E 27 REMARK 465 SER E 28 REMARK 465 VAL E 29 REMARK 465 SER E 30 REMARK 465 GLY E 31 REMARK 465 VAL E 32 REMARK 465 LEU E 33 REMARK 465 ASN E 34 REMARK 465 PHE E 35 REMARK 465 ALA E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 38 REMARK 465 ASN E 39 REMARK 465 PRO E 40 REMARK 465 THR E 41 REMARK 465 THR E 42 REMARK 465 PHE E 43 REMARK 465 MET E 44 REMARK 465 LEU E 45 REMARK 465 ALA E 46 REMARK 465 ALA E 47 REMARK 465 LYS E 48 REMARK 465 GLU E 49 REMARK 465 THR E 50 REMARK 465 PHE E 51 REMARK 465 ASP E 52 REMARK 465 GLN E 53 REMARK 465 GLY E 54 REMARK 465 VAL E 55 REMARK 465 ALA E 56 REMARK 465 ILE E 57 REMARK 465 TYR E 58 REMARK 465 ASP E 59 REMARK 465 LEU E 60 REMARK 465 LEU E 61 REMARK 465 GLY E 62 REMARK 465 GLU E 63 REMARK 465 ALA E 64 REMARK 465 ILE E 65 REMARK 465 GLY E 66 REMARK 465 GLU E 67 REMARK 465 VAL E 68 REMARK 465 GLU E 69 REMARK 465 GLN E 70 REMARK 465 SER E 71 REMARK 465 ALA E 72 REMARK 465 ASN E 73 REMARK 465 ALA E 74 REMARK 465 GLN E 75 REMARK 465 LYS E 76 REMARK 465 ILE E 77 REMARK 465 SER E 78 REMARK 465 PHE E 79 REMARK 465 LYS E 80 REMARK 465 GLN E 81 REMARK 465 ILE E 82 REMARK 465 ASP E 83 REMARK 465 SER E 84 REMARK 465 VAL E 85 REMARK 465 GLY E 86 REMARK 465 GLY E 87 REMARK 465 ASN E 88 REMARK 465 MET F 1 REMARK 465 TYR F 2 REMARK 465 PRO F 3 REMARK 465 ALA F 4 REMARK 465 VAL F 5 REMARK 465 ALA F 6 REMARK 465 ALA F 7 REMARK 465 ALA F 8 REMARK 465 LEU F 9 REMARK 465 ARG F 10 REMARK 465 ALA F 11 REMARK 465 ALA F 12 REMARK 465 PRO F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 VAL F 16 REMARK 465 LYS F 17 REMARK 465 LEU F 18 REMARK 465 LEU F 19 REMARK 465 ALA F 20 REMARK 465 THR F 21 REMARK 465 ARG F 22 REMARK 465 LEU F 23 REMARK 465 GLY F 24 REMARK 465 VAL F 25 REMARK 465 PRO F 26 REMARK 465 SER F 27 REMARK 465 SER F 28 REMARK 465 VAL F 29 REMARK 465 SER F 30 REMARK 465 GLY F 31 REMARK 465 VAL F 32 REMARK 465 LEU F 33 REMARK 465 ASN F 34 REMARK 465 PHE F 35 REMARK 465 ALA F 36 REMARK 465 LYS F 37 REMARK 465 ALA F 38 REMARK 465 ASN F 39 REMARK 465 PRO F 40 REMARK 465 THR F 41 REMARK 465 THR F 42 REMARK 465 PHE F 43 REMARK 465 MET F 44 REMARK 465 LEU F 45 REMARK 465 ALA F 46 REMARK 465 ALA F 47 REMARK 465 LYS F 48 REMARK 465 GLU F 49 REMARK 465 THR F 50 REMARK 465 PHE F 51 REMARK 465 ASP F 52 REMARK 465 GLN F 53 REMARK 465 GLY F 54 REMARK 465 VAL F 55 REMARK 465 ALA F 56 REMARK 465 ILE F 57 REMARK 465 TYR F 58 REMARK 465 ASP F 59 REMARK 465 LEU F 60 REMARK 465 LEU F 61 REMARK 465 GLY F 62 REMARK 465 GLU F 63 REMARK 465 ALA F 64 REMARK 465 ILE F 65 REMARK 465 GLY F 66 REMARK 465 GLU F 67 REMARK 465 VAL F 68 REMARK 465 GLU F 69 REMARK 465 GLN F 70 REMARK 465 SER F 71 REMARK 465 ALA F 72 REMARK 465 ASN F 73 REMARK 465 ALA F 74 REMARK 465 GLN F 75 REMARK 465 LYS F 76 REMARK 465 ILE F 77 REMARK 465 SER F 78 REMARK 465 PHE F 79 REMARK 465 LYS F 80 REMARK 465 GLN F 81 REMARK 465 ILE F 82 REMARK 465 ASP F 83 REMARK 465 SER F 84 REMARK 465 VAL F 85 REMARK 465 GLY F 86 REMARK 465 GLY F 87 REMARK 465 ASN F 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 796 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 452 CA - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 51 -170.24 56.94 REMARK 500 SER A 76 -60.49 -95.25 REMARK 500 ASP A 117 -153.95 70.47 REMARK 500 ARG A 118 140.91 70.99 REMARK 500 ASP A 123 48.63 -95.96 REMARK 500 SER A 124 31.36 -142.34 REMARK 500 ARG A 134 29.93 45.02 REMARK 500 GLU A 135 36.41 39.41 REMARK 500 LEU A 137 9.80 59.20 REMARK 500 ILE A 146 70.55 49.09 REMARK 500 SER A 149 -161.45 52.21 REMARK 500 HIS A 150 16.51 55.10 REMARK 500 VAL A 172 141.65 53.29 REMARK 500 THR A 176 70.33 57.57 REMARK 500 SER A 183 168.61 67.88 REMARK 500 ALA A 211 -166.34 -78.56 REMARK 500 THR A 212 -68.14 63.35 REMARK 500 SER A 213 -164.59 61.25 REMARK 500 VAL A 228 -68.34 -96.32 REMARK 500 ARG A 247 40.95 -109.15 REMARK 500 PRO A 254 42.01 -81.46 REMARK 500 ASP A 255 -32.66 -132.50 REMARK 500 SER A 316 -2.34 69.51 REMARK 500 VAL A 321 -55.77 -125.69 REMARK 500 PRO A 339 45.18 -82.34 REMARK 500 GLU A 342 139.97 -174.73 REMARK 500 ALA A 363 67.54 61.87 REMARK 500 SER A 376 -138.82 56.93 REMARK 500 ARG A 386 70.76 58.45 REMARK 500 ASN A 387 -177.52 -61.85 REMARK 500 ASN A 388 136.46 -36.39 REMARK 500 ASN A 390 178.68 68.29 REMARK 500 ASP A 391 153.13 65.59 REMARK 500 ARG A 394 -174.80 57.28 REMARK 500 LEU A 396 69.10 60.45 REMARK 500 MET A 397 -167.88 -76.46 REMARK 500 GLU A 399 122.45 -38.10 REMARK 500 TYR A 438 160.76 70.66 REMARK 500 PRO A 452 48.36 -91.03 REMARK 500 PRO A 458 75.99 -67.30 REMARK 500 LEU A 485 -162.64 -76.11 REMARK 500 TYR A 486 40.09 -92.30 REMARK 500 HIS A 492 4.53 -62.05 REMARK 500 ASN A 517 149.00 73.31 REMARK 500 VAL A 563 77.44 45.35 REMARK 500 SER A 578 32.47 -141.17 REMARK 500 PRO A 580 39.74 -82.44 REMARK 500 SER A 604 -2.44 69.37 REMARK 500 ASP A 607 161.96 61.85 REMARK 500 ARG A 608 47.98 36.85 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-61592 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF FULL PARTICLE OF PROKARYOTIC DSRNA VIRUS PHIYY DBREF1 9JLP A 1 805 UNP A0A1W2KDS5_9VIRU DBREF2 9JLP A A0A1W2KDS5 1 805 DBREF1 9JLP C 1 143 UNP A0A1W2KDT9_9VIRU DBREF2 9JLP C A0A1W2KDT9 1 143 DBREF1 9JLP D 1 143 UNP A0A1W2KDT9_9VIRU DBREF2 9JLP D A0A1W2KDT9 1 143 DBREF1 9JLP E 1 143 UNP A0A1W2KDT9_9VIRU DBREF2 9JLP E A0A1W2KDT9 1 143 DBREF1 9JLP F 1 143 UNP A0A1W2KDT9_9VIRU DBREF2 9JLP F A0A1W2KDT9 1 143 SEQRES 1 A 805 MET LEU LYS PHE ASN LEU ARG GLU ILE TYR LYS ALA LEU SEQRES 2 A 805 PRO ARG LEU THR GLN ALA ASN LEU ILE GLY MET THR GLU SEQRES 3 A 805 GLY ALA ILE PRO VAL ALA SER VAL VAL LYS PRO ILE ALA SEQRES 4 A 805 PHE ASN THR LEU HIS ALA ALA SER HIS GLU GLY GLU PHE SEQRES 5 A 805 PHE TYR GLU PHE GLY LYS GLY VAL VAL ASP PRO LYS LEU SEQRES 6 A 805 ILE ALA ARG VAL MET MET HIS TYR ALA ALA SER SER THR SEQRES 7 A 805 ARG VAL PRO SER PHE GLN ALA LEU VAL ASP GLU PHE LEU SEQRES 8 A 805 GLU TYR GLN TYR SER VAL ALA SER ASN SER THR LEU TRP SEQRES 9 A 805 ARG ASN LEU VAL ALA PHE VAL THR GLY SER SER ASN ASP SEQRES 10 A 805 ARG ALA VAL LYS PRO ASP SER MET GLY ARG MET PRO ALA SEQRES 11 A 805 GLU ALA ILE ARG GLU ARG LEU GLY ASP GLU ALA LYS LYS SEQRES 12 A 805 GLN GLY ILE VAL SER SER HIS ALA ASP PHE PHE ASN LEU SEQRES 13 A 805 ILE VAL ALA ASP TYR ALA ILE SER MET LEU ALA GLN ALA SEQRES 14 A 805 ARG LEU VAL LEU PRO GLY THR PRO MET VAL TYR ARG ILE SEQRES 15 A 805 SER ARG LEU VAL SER PHE PRO ASP TYR GLY LEU TYR VAL SEQRES 16 A 805 ASP ALA VAL ARG ALA ALA ASN LEU SER ARG LEU LEU GLU SEQRES 17 A 805 GLY LEU ALA THR SER ASP LEU GLY LEU VAL LYS LYS THR SEQRES 18 A 805 MET GLU LYS LYS GLU ALA VAL SER PRO SER PHE ILE ALA SEQRES 19 A 805 HIS GLN LEU ALA SER ALA CYS ILE ARG ALA ALA ASP ARG SEQRES 20 A 805 VAL ARG GLY SER TYR ASN PRO ASP LYS VAL VAL GLU ALA SEQRES 21 A 805 VAL PHE TYR SER LEU GLY THR VAL TRP ASP PRO SER THR SEQRES 22 A 805 PRO ALA ALA ASN VAL ALA THR ALA SER VAL GLN SER SER SEQRES 23 A 805 GLU GLY PHE SER ARG LEU LEU VAL ASN ALA THR MET PHE SEQRES 24 A 805 VAL ALA TYR GLN ARG ARG VAL ALA THR VAL GLY ALA PHE SEQRES 25 A 805 PRO ALA PRO SER PHE SER ASP MET VAL ILE ALA ARG GLU SEQRES 26 A 805 VAL ILE PRO LEU PHE LEU GLU ALA VAL GLU ARG ILE SER SEQRES 27 A 805 PRO TYR ALA GLU ARG THR LEU ALA GLN ALA VAL GLY HIS SEQRES 28 A 805 LEU GLY MET ARG SER ASN THR GLU VAL ASP GLY ALA LYS SEQRES 29 A 805 SER HIS VAL ALA VAL TYR GLU ALA TRP ASN PHE SER ARG SEQRES 30 A 805 SER ALA VAL ALA PHE VAL PRO VAL ARG ASN ASN ARG ASN SEQRES 31 A 805 ASP LEU GLY ARG PHE LEU MET GLU GLU VAL ALA VAL SER SEQRES 32 A 805 ASP ALA MET SER SER ALA MET GLY PRO ILE ALA GLU THR SEQRES 33 A 805 PHE SER VAL ASP GLY PHE VAL GLU ARG HIS LEU THR ALA SEQRES 34 A 805 LEU ALA THR ALA VAL PRO GLY ALA TYR ASN VAL LYS ALA SEQRES 35 A 805 ASN GLY THR GLU MET LEU LEU ALA LEU PRO SER VAL SER SEQRES 36 A 805 ALA ALA PRO LEU THR LEU GLY VAL THR THR GLU ALA LEU SEQRES 37 A 805 LEU SER SER MET ARG ASN ALA GLY PRO PHE GLU PRO ALA SEQRES 38 A 805 VAL ASP GLN LEU TYR ALA GLU GLY VAL GLU HIS VAL ILE SEQRES 39 A 805 SER ASP SER GLU GLY MET GLY SER ASP THR HIS ARG ALA SEQRES 40 A 805 ALA VAL ALA ARG GLY GLU ALA LEU ILE ASN SER TYR TYR SEQRES 41 A 805 VAL LEU MET LEU ALA ARG ALA LEU LEU THR GLY GLY MET SEQRES 42 A 805 THR ARG VAL GLY SER VAL PRO VAL SER ASN ASN ALA ASN SEQRES 43 A 805 THR GLU SER ASN VAL ALA LEU TYR TRP GLU LEU THR THR SEQRES 44 A 805 SER SER LYS VAL PRO PHE GLY PRO THR GLY ILE LEU GLY SEQRES 45 A 805 GLY ARG LEU GLU THR SER GLU PRO VAL GLU ARG VAL ALA SEQRES 46 A 805 TYR GLY THR ASP GLU GLU PRO THR LEU SER VAL THR PRO SEQRES 47 A 805 PRO ALA LEU PRO LEU SER ALA HIS ASP ARG ALA LEU HIS SEQRES 48 A 805 VAL TRP ASN TRP HIS ASP SER SER SER LYS VAL GLU TYR SEQRES 49 A 805 ASN ASP ARG PHE GLU THR THR ILE SER ASN GLN LYS VAL SEQRES 50 A 805 ILE VAL GLN LEU ASN GLU ILE ASP ILE LEU SER LEU GLY SEQRES 51 A 805 TYR ARG ARG GLU ARG LEU ARG PHE MET VAL PRO MET SER SEQRES 52 A 805 ALA ARG ALA ILE ALA GLU MET TRP VAL THR TRP TYR THR SEQRES 53 A 805 GLU THR ASP LYS GLU LEU GLN ALA MET LYS ALA LYS THR SEQRES 54 A 805 LYS ASP THR ALA ALA LEU ALA ALA ILE GLU GLY ARG GLN SEQRES 55 A 805 LEU SER ALA GLY VAL LEU LEU VAL GLN ARG LEU ARG SER SEQRES 56 A 805 VAL GLY ARG SER PRO VAL GLY SER ASN LEU ALA ARG VAL SEQRES 57 A 805 ILE ASN SER ARG ILE VAL ALA SER LEU ARG LYS SER ALA SEQRES 58 A 805 GLN ILE ASP SER MET LYS HIS VAL TYR THR VAL PRO HIS SEQRES 59 A 805 GLN ILE ARG LEU GLU VAL TYR CYS GLY LEU ILE LEU LEU SEQRES 60 A 805 GLU LEU LEU GLY VAL LEU ASP PRO ALA GLU VAL SER LYS SEQRES 61 A 805 LEU THR ALA SER LEU SER ALA THR ASN ALA LEU ALA THR SEQRES 62 A 805 VAL MET THR MET GLY LEU ASP ASP SER ASN ASN ASN SEQRES 1 C 143 MET TYR PRO ALA VAL ALA ALA ALA LEU ARG ALA ALA PRO SEQRES 2 C 143 GLY ALA VAL LYS LEU LEU ALA THR ARG LEU GLY VAL PRO SEQRES 3 C 143 SER SER VAL SER GLY VAL LEU ASN PHE ALA LYS ALA ASN SEQRES 4 C 143 PRO THR THR PHE MET LEU ALA ALA LYS GLU THR PHE ASP SEQRES 5 C 143 GLN GLY VAL ALA ILE TYR ASP LEU LEU GLY GLU ALA ILE SEQRES 6 C 143 GLY GLU VAL GLU GLN SER ALA ASN ALA GLN LYS ILE SER SEQRES 7 C 143 PHE LYS GLN ILE ASP SER VAL GLY GLY ASN VAL LEU ASP SEQRES 8 C 143 GLN LEU ASP ALA LEU ALA ASP GLU MET GLN ASP ILE ASP SEQRES 9 C 143 VAL ALA ILE ARG VAL VAL GLY SER LEU HIS GLU LEU LEU SEQRES 10 C 143 ALA LEU ARG ARG ALA LEU LEU MET SER GLU GLU HIS PHE SEQRES 11 C 143 THR MET TYR GLN ARG LEU LYS ARG LEU LYS GLY ARG ILE SEQRES 1 D 143 MET TYR PRO ALA VAL ALA ALA ALA LEU ARG ALA ALA PRO SEQRES 2 D 143 GLY ALA VAL LYS LEU LEU ALA THR ARG LEU GLY VAL PRO SEQRES 3 D 143 SER SER VAL SER GLY VAL LEU ASN PHE ALA LYS ALA ASN SEQRES 4 D 143 PRO THR THR PHE MET LEU ALA ALA LYS GLU THR PHE ASP SEQRES 5 D 143 GLN GLY VAL ALA ILE TYR ASP LEU LEU GLY GLU ALA ILE SEQRES 6 D 143 GLY GLU VAL GLU GLN SER ALA ASN ALA GLN LYS ILE SER SEQRES 7 D 143 PHE LYS GLN ILE ASP SER VAL GLY GLY ASN VAL LEU ASP SEQRES 8 D 143 GLN LEU ASP ALA LEU ALA ASP GLU MET GLN ASP ILE ASP SEQRES 9 D 143 VAL ALA ILE ARG VAL VAL GLY SER LEU HIS GLU LEU LEU SEQRES 10 D 143 ALA LEU ARG ARG ALA LEU LEU MET SER GLU GLU HIS PHE SEQRES 11 D 143 THR MET TYR GLN ARG LEU LYS ARG LEU LYS GLY ARG ILE SEQRES 1 E 143 MET TYR PRO ALA VAL ALA ALA ALA LEU ARG ALA ALA PRO SEQRES 2 E 143 GLY ALA VAL LYS LEU LEU ALA THR ARG LEU GLY VAL PRO SEQRES 3 E 143 SER SER VAL SER GLY VAL LEU ASN PHE ALA LYS ALA ASN SEQRES 4 E 143 PRO THR THR PHE MET LEU ALA ALA LYS GLU THR PHE ASP SEQRES 5 E 143 GLN GLY VAL ALA ILE TYR ASP LEU LEU GLY GLU ALA ILE SEQRES 6 E 143 GLY GLU VAL GLU GLN SER ALA ASN ALA GLN LYS ILE SER SEQRES 7 E 143 PHE LYS GLN ILE ASP SER VAL GLY GLY ASN VAL LEU ASP SEQRES 8 E 143 GLN LEU ASP ALA LEU ALA ASP GLU MET GLN ASP ILE ASP SEQRES 9 E 143 VAL ALA ILE ARG VAL VAL GLY SER LEU HIS GLU LEU LEU SEQRES 10 E 143 ALA LEU ARG ARG ALA LEU LEU MET SER GLU GLU HIS PHE SEQRES 11 E 143 THR MET TYR GLN ARG LEU LYS ARG LEU LYS GLY ARG ILE SEQRES 1 F 143 MET TYR PRO ALA VAL ALA ALA ALA LEU ARG ALA ALA PRO SEQRES 2 F 143 GLY ALA VAL LYS LEU LEU ALA THR ARG LEU GLY VAL PRO SEQRES 3 F 143 SER SER VAL SER GLY VAL LEU ASN PHE ALA LYS ALA ASN SEQRES 4 F 143 PRO THR THR PHE MET LEU ALA ALA LYS GLU THR PHE ASP SEQRES 5 F 143 GLN GLY VAL ALA ILE TYR ASP LEU LEU GLY GLU ALA ILE SEQRES 6 F 143 GLY GLU VAL GLU GLN SER ALA ASN ALA GLN LYS ILE SER SEQRES 7 F 143 PHE LYS GLN ILE ASP SER VAL GLY GLY ASN VAL LEU ASP SEQRES 8 F 143 GLN LEU ASP ALA LEU ALA ASP GLU MET GLN ASP ILE ASP SEQRES 9 F 143 VAL ALA ILE ARG VAL VAL GLY SER LEU HIS GLU LEU LEU SEQRES 10 F 143 ALA LEU ARG ARG ALA LEU LEU MET SER GLU GLU HIS PHE SEQRES 11 F 143 THR MET TYR GLN ARG LEU LYS ARG LEU LYS GLY ARG ILE HELIX 1 AA1 ASN A 5 ILE A 9 5 5 HELIX 2 AA2 LEU A 13 LEU A 16 5 4 HELIX 3 AA3 THR A 17 GLY A 23 1 7 HELIX 4 AA4 ASP A 62 SER A 77 1 16 HELIX 5 AA5 SER A 82 ASN A 100 1 19 HELIX 6 AA6 SER A 101 THR A 112 1 12 HELIX 7 AA7 PRO A 129 ARG A 134 1 6 HELIX 8 AA8 GLU A 135 LEU A 137 5 3 HELIX 9 AA9 GLY A 138 GLN A 144 1 7 HELIX 10 AB1 HIS A 150 GLN A 168 1 19 HELIX 11 AB2 ASP A 190 ALA A 211 1 22 HELIX 12 AB3 LEU A 215 GLU A 223 1 9 HELIX 13 AB4 SER A 231 ARG A 247 1 17 HELIX 14 AB5 ASP A 255 ASP A 270 1 16 HELIX 15 AB6 GLY A 288 VAL A 294 1 7 HELIX 16 AB7 ALA A 296 VAL A 309 1 14 HELIX 17 AB8 VAL A 321 SER A 338 1 18 HELIX 18 AB9 LEU A 345 VAL A 349 1 5 HELIX 19 AC1 GLU A 399 SER A 418 1 20 HELIX 20 AC2 ASP A 420 ALA A 433 1 14 HELIX 21 AC3 THR A 464 ASN A 474 1 11 HELIX 22 AC4 TYR A 486 GLU A 491 1 6 HELIX 23 AC5 HIS A 492 LEU A 515 1 24 HELIX 24 AC6 VAL A 581 TYR A 586 1 6 HELIX 25 AC7 GLU A 643 LEU A 647 1 5 HELIX 26 AC8 PRO A 661 LYS A 690 1 30 HELIX 27 AC9 ALA A 694 ARG A 718 1 25 HELIX 28 AD1 SER A 719 GLN A 742 1 24 HELIX 29 AD2 ASP A 744 TYR A 750 5 7 HELIX 30 AD3 THR A 751 LEU A 770 1 20 HELIX 31 AD4 ASP A 774 THR A 788 1 15 HELIX 32 AD5 ASN A 789 THR A 796 1 8 HELIX 33 AD6 LEU C 93 GLY C 111 1 19 HELIX 34 AD7 SER C 112 HIS C 114 5 3 HELIX 35 AD8 GLU C 115 MET C 125 1 11 HELIX 36 AD9 GLU C 128 ILE C 143 1 16 HELIX 37 AE1 ASP D 94 VAL D 110 1 17 HELIX 38 AE2 ALA D 118 MET D 125 1 8 HELIX 39 AE3 PHE D 130 LYS D 140 1 11 HELIX 40 AE4 LEU E 90 GLY E 111 1 22 HELIX 41 AE5 SER E 112 LEU E 124 1 13 HELIX 42 AE6 SER E 126 ILE E 143 1 18 HELIX 43 AE7 LEU F 90 VAL F 110 1 21 HELIX 44 AE8 GLU F 115 SER F 126 1 12 HELIX 45 AE9 GLU F 128 ILE F 143 1 16 SHEET 1 AA1 2 THR A 42 LEU A 43 0 SHEET 2 AA1 2 ARG A 343 THR A 344 -1 O ARG A 343 N LEU A 43 SHEET 1 AA2 2 TYR A 54 PHE A 56 0 SHEET 2 AA2 2 MET A 178 TYR A 180 -1 O TYR A 180 N TYR A 54 SHEET 1 AA3 2 GLY A 353 ARG A 355 0 SHEET 2 AA3 2 ALA A 368 TYR A 370 -1 O ALA A 368 N ARG A 355 SHEET 1 AA4 3 VAL A 380 PHE A 382 0 SHEET 2 AA4 3 ARG A 657 MET A 659 -1 O ARG A 657 N PHE A 382 SHEET 3 AA4 3 SER A 620 LYS A 621 -1 N SER A 620 O PHE A 658 SHEET 1 AA5 2 ASN A 625 GLU A 629 0 SHEET 2 AA5 2 ILE A 638 ASN A 642 -1 O LEU A 641 N ASP A 626 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 597 0 0 45 11 0 0 6 7593 5 0 106 END