HEADER HYDROLASE 23-SEP-24 9JNF TITLE CRYSTAL STRUCTURE OF SME-1 E166A MUTANT IN COMPLEX WITH ERTAPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SME E166A; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 GENE: SME-2, BLASME-1, BLASME-4, BLASME1, SME12620_22; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACYL ENZYME COMPLEX, CARBAPENEMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.DHANKHAR,S.HAZRA REVDAT 1 01-OCT-25 9JNF 0 JRNL AUTH K.DHANKHAR,S.HAZRA JRNL TITL CRYSTAL STRUCTURE OF SME-1 E166A MUTANT IN COMPLEX WITH JRNL TITL 2 ERTAPENEM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.055 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4106 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79700 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.41700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.31300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.557 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4273 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5761 ; 2.579 ; 1.821 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 8.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;13.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;17.932 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.172 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3222 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2099 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2945 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2142 ; 2.418 ; 0.945 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2671 ; 3.896 ; 1.692 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2131 ; 3.162 ; 1.061 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3089 ; 4.924 ; 1.918 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4273 ; 4.193 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 267 NULL REMARK 3 1 A 1 A 267 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 302 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5229 0.0783 49.8631 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.0209 REMARK 3 T33: 0.0133 T12: 0.0047 REMARK 3 T13: -0.0152 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.1798 L22: 1.5129 REMARK 3 L33: 1.8164 L12: 0.5018 REMARK 3 L13: -0.5738 L23: -0.3756 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.0467 S13: 0.0050 REMARK 3 S21: -0.1478 S22: 0.0285 S23: -0.0201 REMARK 3 S31: 0.0742 S32: -0.0135 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 17.0418 23.4931 15.3251 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0373 REMARK 3 T33: 0.0045 T12: -0.0267 REMARK 3 T13: -0.0072 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.3568 L22: 1.8036 REMARK 3 L33: 1.4268 L12: -0.6056 REMARK 3 L13: -0.3022 L23: 0.2091 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.0557 S13: 0.0352 REMARK 3 S21: -0.0133 S22: -0.0221 S23: 0.0250 REMARK 3 S31: 0.0222 S32: 0.0346 S33: 0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1300051726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 23.952 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2 M LITHIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.33600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 1 CG OD1 ND2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ASN B 1 CG OD1 ND2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 119 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ASN A 147 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU A 235 CB - CG - CD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 THR A 242 OG1 - CB - CG2 ANGL. DEV. = -18.8 DEGREES REMARK 500 LYS A 253 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLN A 264 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 PHE B 17 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 LYS B 87 CB - CG - CD ANGL. DEV. = 17.6 DEGREES REMARK 500 TYR B 88 CA - CB - CG ANGL. DEV. = 13.0 DEGREES REMARK 500 ASN B 147 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG B 243 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 243 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS B 253 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 45 -135.64 45.13 REMARK 500 TYR A 73 40.46 -152.69 REMARK 500 SER A 82 68.62 -116.87 REMARK 500 ALA A 149 39.17 38.78 REMARK 500 ASN A 177 -170.81 -65.45 REMARK 500 ARG A 197 -115.60 -114.78 REMARK 500 CYS B 45 -135.18 44.67 REMARK 500 TYR B 73 39.57 -152.38 REMARK 500 SER B 82 66.38 -115.27 REMARK 500 ASN B 177 -173.84 -64.76 REMARK 500 ARG B 197 -113.77 -114.04 REMARK 500 ARG B 232 152.89 176.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 138 0.10 SIDE CHAIN REMARK 500 ARG A 155 0.09 SIDE CHAIN REMARK 500 ARG B 20 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9JNF A 1 267 UNP Q54488 Q54488_SERMA 28 294 DBREF 9JNF B 1 267 UNP Q54488 Q54488_SERMA 28 294 SEQADV 9JNF MET A -1 UNP Q54488 INITIATING METHIONINE SEQADV 9JNF GLY A 0 UNP Q54488 EXPRESSION TAG SEQADV 9JNF ALA A 143 UNP Q54488 GLU 170 ENGINEERED MUTATION SEQADV 9JNF HIS A 268 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS A 269 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS A 270 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS A 271 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS A 272 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS A 273 UNP Q54488 EXPRESSION TAG SEQADV 9JNF MET B -1 UNP Q54488 INITIATING METHIONINE SEQADV 9JNF GLY B 0 UNP Q54488 EXPRESSION TAG SEQADV 9JNF ALA B 143 UNP Q54488 GLU 170 ENGINEERED MUTATION SEQADV 9JNF HIS B 268 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS B 269 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS B 270 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS B 271 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS B 272 UNP Q54488 EXPRESSION TAG SEQADV 9JNF HIS B 273 UNP Q54488 EXPRESSION TAG SEQRES 1 A 275 MET GLY ASN LYS SER ASP ALA ALA ALA LYS GLN ILE LYS SEQRES 2 A 275 LYS LEU GLU GLU ASP PHE ASP GLY ARG ILE GLY VAL PHE SEQRES 3 A 275 ALA ILE ASP THR GLY SER GLY ASN THR PHE GLY TYR ARG SEQRES 4 A 275 SER ASP GLU ARG PHE PRO LEU CYS SER SER PHE LYS GLY SEQRES 5 A 275 PHE LEU ALA ALA ALA VAL LEU GLU ARG VAL GLN GLN LYS SEQRES 6 A 275 LYS LEU ASP ILE ASN GLN LYS VAL LYS TYR GLU SER ARG SEQRES 7 A 275 ASP LEU GLU TYR HIS SER PRO ILE THR THR LYS TYR LYS SEQRES 8 A 275 GLY SER GLY MET THR LEU GLY ASP MET ALA SER ALA ALA SEQRES 9 A 275 LEU GLN TYR SER ASP ASN GLY ALA THR ASN ILE ILE MET SEQRES 10 A 275 GLU ARG PHE LEU GLY GLY PRO GLU GLY MET THR LYS PHE SEQRES 11 A 275 MET ARG SER ILE GLY ASP ASN GLU PHE ARG LEU ASP ARG SEQRES 12 A 275 TRP ALA LEU GLU LEU ASN THR ALA ILE PRO GLY ASP LYS SEQRES 13 A 275 ARG ASP THR SER THR PRO LYS ALA VAL ALA ASN SER LEU SEQRES 14 A 275 ASN LYS LEU ALA LEU GLY ASN VAL LEU ASN ALA LYS VAL SEQRES 15 A 275 LYS ALA ILE TYR GLN ASN TRP LEU LYS GLY ASN THR THR SEQRES 16 A 275 GLY ASP ALA ARG ILE ARG ALA SER VAL PRO ALA ASP TRP SEQRES 17 A 275 VAL VAL GLY ASP LYS THR GLY SER CYS GLY ALA TYR GLY SEQRES 18 A 275 THR ALA ASN ASP TYR ALA VAL ILE TRP PRO LYS ASN ARG SEQRES 19 A 275 ALA PRO LEU ILE VAL SER ILE TYR THR THR ARG LYS SER SEQRES 20 A 275 LYS ASP ASP LYS HIS SER ASP LYS THR ILE ALA GLU ALA SEQRES 21 A 275 SER ARG ILE ALA ILE GLN ALA ILE ASP HIS HIS HIS HIS SEQRES 22 A 275 HIS HIS SEQRES 1 B 275 MET GLY ASN LYS SER ASP ALA ALA ALA LYS GLN ILE LYS SEQRES 2 B 275 LYS LEU GLU GLU ASP PHE ASP GLY ARG ILE GLY VAL PHE SEQRES 3 B 275 ALA ILE ASP THR GLY SER GLY ASN THR PHE GLY TYR ARG SEQRES 4 B 275 SER ASP GLU ARG PHE PRO LEU CYS SER SER PHE LYS GLY SEQRES 5 B 275 PHE LEU ALA ALA ALA VAL LEU GLU ARG VAL GLN GLN LYS SEQRES 6 B 275 LYS LEU ASP ILE ASN GLN LYS VAL LYS TYR GLU SER ARG SEQRES 7 B 275 ASP LEU GLU TYR HIS SER PRO ILE THR THR LYS TYR LYS SEQRES 8 B 275 GLY SER GLY MET THR LEU GLY ASP MET ALA SER ALA ALA SEQRES 9 B 275 LEU GLN TYR SER ASP ASN GLY ALA THR ASN ILE ILE MET SEQRES 10 B 275 GLU ARG PHE LEU GLY GLY PRO GLU GLY MET THR LYS PHE SEQRES 11 B 275 MET ARG SER ILE GLY ASP ASN GLU PHE ARG LEU ASP ARG SEQRES 12 B 275 TRP ALA LEU GLU LEU ASN THR ALA ILE PRO GLY ASP LYS SEQRES 13 B 275 ARG ASP THR SER THR PRO LYS ALA VAL ALA ASN SER LEU SEQRES 14 B 275 ASN LYS LEU ALA LEU GLY ASN VAL LEU ASN ALA LYS VAL SEQRES 15 B 275 LYS ALA ILE TYR GLN ASN TRP LEU LYS GLY ASN THR THR SEQRES 16 B 275 GLY ASP ALA ARG ILE ARG ALA SER VAL PRO ALA ASP TRP SEQRES 17 B 275 VAL VAL GLY ASP LYS THR GLY SER CYS GLY ALA TYR GLY SEQRES 18 B 275 THR ALA ASN ASP TYR ALA VAL ILE TRP PRO LYS ASN ARG SEQRES 19 B 275 ALA PRO LEU ILE VAL SER ILE TYR THR THR ARG LYS SER SEQRES 20 B 275 LYS ASP ASP LYS HIS SER ASP LYS THR ILE ALA GLU ALA SEQRES 21 B 275 SER ARG ILE ALA ILE GLN ALA ILE ASP HIS HIS HIS HIS SEQRES 22 B 275 HIS HIS HET 2RG A 301 33 HET PEG A 302 7 HET 2RG B 301 33 HET PEG B 302 7 HET EDO B 303 4 HET CL B 304 1 HETNAM 2RG (2S,3R,4S)-4-({(3S,5S)-5-[(3-CARBOXYPHENYL) HETNAM 2 2RG CARBAMOYL]PYRROLIDIN-3-YL}SULFANYL)-2-[(1S,2R)-1- HETNAM 3 2RG FORMYL-2-HYDROXYPROPYL]-3-METHYL-3,4-DIHYDRO-2H- HETNAM 4 2RG PYRROLE-5-CARBOXYLIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN 2RG ERTAPENEM, BOUND FORM POST-ISOMERIZED HETSYN EDO ETHYLENE GLYCOL FORMUL 3 2RG 2(C22 H27 N3 O7 S) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 7 EDO C2 H6 O2 FORMUL 8 CL CL 1- FORMUL 9 HOH *104(H2 O) HELIX 1 AA1 ASN A 1 PHE A 17 1 17 HELIX 2 AA2 CYS A 45 SER A 47 5 3 HELIX 3 AA3 PHE A 48 GLN A 62 1 15 HELIX 4 AA4 ILE A 84 LYS A 89 1 6 HELIX 5 AA5 LEU A 95 SER A 106 1 12 HELIX 6 AA6 ASP A 107 PHE A 118 1 12 HELIX 7 AA7 GLY A 120 ILE A 132 1 13 HELIX 8 AA8 THR A 159 LEU A 172 1 14 HELIX 9 AA9 ASN A 177 GLY A 190 1 14 HELIX 10 AB1 ARG A 197 VAL A 202 5 6 HELIX 11 AB2 SER A 251 ILE A 266 1 16 HELIX 12 AB3 LYS B 2 ASP B 18 1 17 HELIX 13 AB4 CYS B 45 SER B 47 5 3 HELIX 14 AB5 PHE B 48 GLN B 62 1 15 HELIX 15 AB6 ILE B 84 LYS B 89 1 6 HELIX 16 AB7 LEU B 95 SER B 106 1 12 HELIX 17 AB8 ASP B 107 PHE B 118 1 12 HELIX 18 AB9 GLY B 120 SER B 131 1 12 HELIX 19 AC1 LEU B 144 THR B 148 5 5 HELIX 20 AC2 THR B 159 LEU B 172 1 14 HELIX 21 AC3 ASN B 177 GLY B 190 1 14 HELIX 22 AC4 ARG B 197 VAL B 202 5 6 HELIX 23 AC5 SER B 251 ILE B 266 1 16 SHEET 1 AA1 5 THR A 33 TYR A 36 0 SHEET 2 AA1 5 GLY A 19 ASP A 27 -1 N VAL A 23 O TYR A 36 SHEET 3 AA1 5 LEU A 235 ARG A 243 -1 O TYR A 240 N GLY A 22 SHEET 4 AA1 5 ALA A 221 TRP A 228 -1 N ALA A 225 O VAL A 237 SHEET 5 AA1 5 VAL A 207 SER A 214 -1 N VAL A 207 O TRP A 228 SHEET 1 AA2 2 PHE A 42 PRO A 43 0 SHEET 2 AA2 2 THR A 157 SER A 158 -1 O SER A 158 N PHE A 42 SHEET 1 AA3 2 LYS A 70 VAL A 71 0 SHEET 2 AA3 2 MET A 93 THR A 94 -1 O MET A 93 N VAL A 71 SHEET 1 AA4 5 THR B 33 TYR B 36 0 SHEET 2 AA4 5 GLY B 19 ASP B 27 -1 N VAL B 23 O TYR B 36 SHEET 3 AA4 5 LEU B 235 ARG B 243 -1 O TYR B 240 N GLY B 22 SHEET 4 AA4 5 ALA B 221 TRP B 228 -1 N ALA B 225 O VAL B 237 SHEET 5 AA4 5 VAL B 207 SER B 214 -1 N GLY B 209 O VAL B 226 SHEET 1 AA5 2 PHE B 42 PRO B 43 0 SHEET 2 AA5 2 THR B 157 SER B 158 -1 O SER B 158 N PHE B 42 SHEET 1 AA6 2 LYS B 70 VAL B 71 0 SHEET 2 AA6 2 MET B 93 THR B 94 -1 O MET B 93 N VAL B 71 SSBOND 1 CYS A 45 CYS A 215 1555 1555 2.13 SSBOND 2 CYS B 45 CYS B 215 1555 1555 2.16 LINK OG SER A 46 CAA 2RG A 301 1555 1555 1.40 LINK OG SER B 46 CAA 2RG B 301 1555 1555 1.39 CRYST1 36.112 50.672 130.339 90.00 92.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027692 0.000000 0.001219 0.00000 SCALE2 0.000000 0.019735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007680 0.00000 CONECT 342 1655 CONECT 348 4122 CONECT 1655 342 CONECT 2402 3709 CONECT 2408 4162 CONECT 3709 2402 CONECT 4115 4117 4118 4138 CONECT 4116 4118 4120 CONECT 4117 4115 CONECT 4118 4115 4116 4119 CONECT 4119 4118 4121 CONECT 4120 4116 4121 CONECT 4121 4119 4120 4132 CONECT 4122 348 4123 4124 CONECT 4123 4122 4125 4126 CONECT 4124 4122 CONECT 4125 4123 4129 4131 CONECT 4126 4123 4127 4128 CONECT 4127 4126 CONECT 4128 4126 CONECT 4129 4125 4130 4135 CONECT 4130 4129 4132 4133 CONECT 4131 4125 4133 CONECT 4132 4121 4130 CONECT 4133 4130 4131 4134 CONECT 4134 4133 4136 4137 CONECT 4135 4129 CONECT 4136 4134 CONECT 4137 4134 CONECT 4138 4115 4139 CONECT 4139 4138 4140 4144 CONECT 4140 4139 4141 CONECT 4141 4140 4142 4145 CONECT 4142 4141 4143 CONECT 4143 4142 4144 CONECT 4144 4139 4143 CONECT 4145 4141 4146 4147 CONECT 4146 4145 CONECT 4147 4145 CONECT 4148 4149 4150 CONECT 4149 4148 CONECT 4150 4148 4151 CONECT 4151 4150 4152 CONECT 4152 4151 4153 CONECT 4153 4152 4154 CONECT 4154 4153 CONECT 4155 4157 4158 4178 CONECT 4156 4158 4160 CONECT 4157 4155 CONECT 4158 4155 4156 4159 CONECT 4159 4158 4161 CONECT 4160 4156 4161 CONECT 4161 4159 4160 4172 CONECT 4162 2408 4163 4164 CONECT 4163 4162 4165 4166 CONECT 4164 4162 CONECT 4165 4163 4169 4171 CONECT 4166 4163 4167 4168 CONECT 4167 4166 CONECT 4168 4166 CONECT 4169 4165 4170 4175 CONECT 4170 4169 4172 4173 CONECT 4171 4165 4173 CONECT 4172 4161 4170 CONECT 4173 4170 4171 4174 CONECT 4174 4173 4176 4177 CONECT 4175 4169 CONECT 4176 4174 CONECT 4177 4174 CONECT 4178 4155 4179 CONECT 4179 4178 4180 4184 CONECT 4180 4179 4181 CONECT 4181 4180 4182 4185 CONECT 4182 4181 4183 CONECT 4183 4182 4184 CONECT 4184 4179 4183 CONECT 4185 4181 4186 4187 CONECT 4186 4185 CONECT 4187 4185 CONECT 4188 4189 4190 CONECT 4189 4188 CONECT 4190 4188 4191 CONECT 4191 4190 4192 CONECT 4192 4191 4193 CONECT 4193 4192 4194 CONECT 4194 4193 CONECT 4195 4196 4197 CONECT 4196 4195 CONECT 4197 4195 4198 CONECT 4198 4197 MASTER 399 0 6 23 18 0 0 6 4295 2 90 44 END