data_9JU1 # _entry.id 9JU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9JU1 pdb_00009ju1 10.2210/pdb9ju1/pdb WWPDB D_1300051956 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9JU1 _pdbx_database_status.recvd_initial_deposition_date 2024-10-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 9 _pdbx_contact_author.email fujii@omu.ac.jp _pdbx_contact_author.name_first Ikuo _pdbx_contact_author.name_last Fujii _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2571-546X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kamo, M.' 1 0009-0007-5163-7190 'Michigami, M.' 2 0000-0001-7075-8958 'Inaka, K.' 3 0009-0002-5719-9578 'Furubayashi, N.' 4 0009-0000-5818-9182 'Kaito, S.' 5 0009-0006-8397-6253 'Kobayashi, Y.' 6 0009-0009-4971-3507 'Shinohara, Y.' 7 0009-0000-2839-2024 'Fujii, I.' 8 0000-0003-2571-546X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biochem Biophys Res Commun' _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 734 _citation.language ? _citation.page_first 150749 _citation.page_last ? _citation.title 'Structural insights into molecular-targeting helix-loop-helix peptide against vascular endothelial growth factor-A.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2024.150749 _citation.pdbx_database_id_PubMed 39357335 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Michigami, M.' 1 ? primary 'Notsu, K.' 2 ? primary 'Kamo, M.' 3 ? primary 'Hirokawa, T.' 4 ? primary 'Kinoshita, T.' 5 ? primary 'Inaka, K.' 6 ? primary 'Nakase, I.' 7 ? primary 'Fujii, I.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn VS42-LR3 4739.405 1 ? ? ? ? 2 polymer man 'Vascular endothelial growth factor A, long form' 11948.680 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 159 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'L-VEGF,Vascular permeability factor,VPF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'CAAELAALEAELAALEGHVEEADFPWGKLNNLIEKLWQLKQAC(NH2)' CAAELAALEAELAALEGHVEEADFPWGKLNNLIEKLWQLKQACX C ? 2 'polypeptide(L)' no no ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ALA n 1 3 ALA n 1 4 GLU n 1 5 LEU n 1 6 ALA n 1 7 ALA n 1 8 LEU n 1 9 GLU n 1 10 ALA n 1 11 GLU n 1 12 LEU n 1 13 ALA n 1 14 ALA n 1 15 LEU n 1 16 GLU n 1 17 GLY n 1 18 HIS n 1 19 VAL n 1 20 GLU n 1 21 GLU n 1 22 ALA n 1 23 ASP n 1 24 PHE n 1 25 PRO n 1 26 TRP n 1 27 GLY n 1 28 LYS n 1 29 LEU n 1 30 ASN n 1 31 ASN n 1 32 LEU n 1 33 ILE n 1 34 GLU n 1 35 LYS n 1 36 LEU n 1 37 TRP n 1 38 GLN n 1 39 LEU n 1 40 LYS n 1 41 GLN n 1 42 ALA n 1 43 CYS n 1 44 NH2 n 2 1 GLY n 2 2 GLN n 2 3 ASN n 2 4 HIS n 2 5 HIS n 2 6 GLU n 2 7 VAL n 2 8 VAL n 2 9 LYS n 2 10 PHE n 2 11 MET n 2 12 ASP n 2 13 VAL n 2 14 TYR n 2 15 GLN n 2 16 ARG n 2 17 SER n 2 18 TYR n 2 19 CYS n 2 20 HIS n 2 21 PRO n 2 22 ILE n 2 23 GLU n 2 24 THR n 2 25 LEU n 2 26 VAL n 2 27 ASP n 2 28 ILE n 2 29 PHE n 2 30 GLN n 2 31 GLU n 2 32 TYR n 2 33 PRO n 2 34 ASP n 2 35 GLU n 2 36 ILE n 2 37 GLU n 2 38 TYR n 2 39 ILE n 2 40 PHE n 2 41 LYS n 2 42 PRO n 2 43 SER n 2 44 CYS n 2 45 VAL n 2 46 PRO n 2 47 LEU n 2 48 MET n 2 49 ARG n 2 50 CYS n 2 51 GLY n 2 52 GLY n 2 53 CYS n 2 54 CYS n 2 55 ASN n 2 56 ASP n 2 57 GLU n 2 58 GLY n 2 59 LEU n 2 60 GLU n 2 61 CYS n 2 62 VAL n 2 63 PRO n 2 64 THR n 2 65 GLU n 2 66 GLU n 2 67 SER n 2 68 ASN n 2 69 ILE n 2 70 THR n 2 71 MET n 2 72 GLN n 2 73 ILE n 2 74 MET n 2 75 ARG n 2 76 ILE n 2 77 LYS n 2 78 PRO n 2 79 HIS n 2 80 GLN n 2 81 GLY n 2 82 GLN n 2 83 HIS n 2 84 ILE n 2 85 GLY n 2 86 GLU n 2 87 MET n 2 88 SER n 2 89 PHE n 2 90 LEU n 2 91 GLN n 2 92 HIS n 2 93 ASN n 2 94 LYS n 2 95 CYS n 2 96 GLU n 2 97 CYS n 2 98 ARG n 2 99 PRO n 2 100 LYS n 2 101 LYS n 2 102 ASP n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VEGFA, VEGF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Origami2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 44 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS C . n A 1 2 ALA 2 2 2 ALA ALA C . n A 1 3 ALA 3 3 3 ALA ALA C . n A 1 4 GLU 4 4 4 GLU GLU C . n A 1 5 LEU 5 5 5 LEU LEU C . n A 1 6 ALA 6 6 6 ALA ALA C . n A 1 7 ALA 7 7 7 ALA ALA C . n A 1 8 LEU 8 8 8 LEU LEU C . n A 1 9 GLU 9 9 9 GLU GLU C . n A 1 10 ALA 10 10 10 ALA ALA C . n A 1 11 GLU 11 11 11 GLU GLU C . n A 1 12 LEU 12 12 12 LEU LEU C . n A 1 13 ALA 13 13 13 ALA ALA C . n A 1 14 ALA 14 14 14 ALA ALA C . n A 1 15 LEU 15 15 15 LEU LEU C . n A 1 16 GLU 16 16 16 GLU GLU C . n A 1 17 GLY 17 17 17 GLY GLY C . n A 1 18 HIS 18 18 18 HIS HIS C . n A 1 19 VAL 19 19 19 VAL VAL C . n A 1 20 GLU 20 20 20 GLU GLU C . n A 1 21 GLU 21 21 21 GLU GLU C . n A 1 22 ALA 22 22 22 ALA ALA C . n A 1 23 ASP 23 23 23 ASP ASP C . n A 1 24 PHE 24 24 24 PHE PHE C . n A 1 25 PRO 25 25 25 PRO PRO C . n A 1 26 TRP 26 26 26 TRP TRP C . n A 1 27 GLY 27 27 27 GLY GLY C . n A 1 28 LYS 28 28 28 LYS LYS C . n A 1 29 LEU 29 29 29 LEU LEU C . n A 1 30 ASN 30 30 30 ASN ASN C . n A 1 31 ASN 31 31 31 ASN ASN C . n A 1 32 LEU 32 32 32 LEU LEU C . n A 1 33 ILE 33 33 33 ILE ILE C . n A 1 34 GLU 34 34 34 GLU GLU C . n A 1 35 LYS 35 35 35 LYS LYS C . n A 1 36 LEU 36 36 36 LEU LEU C . n A 1 37 TRP 37 37 37 TRP TRP C . n A 1 38 GLN 38 38 38 GLN GLN C . n A 1 39 LEU 39 39 39 LEU LEU C . n A 1 40 LYS 40 40 40 LYS LYS C . n A 1 41 GLN 41 41 41 GLN GLN C . n A 1 42 ALA 42 42 42 ALA ALA C . n A 1 43 CYS 43 43 43 CYS CYS C . n A 1 44 NH2 44 44 44 NH2 NH2 C . n B 2 1 GLY 1 8 ? ? ? A . n B 2 2 GLN 2 9 ? ? ? A . n B 2 3 ASN 3 10 ? ? ? A . n B 2 4 HIS 4 11 ? ? ? A . n B 2 5 HIS 5 12 12 HIS HIS A . n B 2 6 GLU 6 13 13 GLU GLU A . n B 2 7 VAL 7 14 14 VAL VAL A . n B 2 8 VAL 8 15 15 VAL VAL A . n B 2 9 LYS 9 16 16 LYS LYS A . n B 2 10 PHE 10 17 17 PHE PHE A . n B 2 11 MET 11 18 18 MET MET A . n B 2 12 ASP 12 19 19 ASP ASP A . n B 2 13 VAL 13 20 20 VAL VAL A . n B 2 14 TYR 14 21 21 TYR TYR A . n B 2 15 GLN 15 22 22 GLN GLN A . n B 2 16 ARG 16 23 23 ARG ARG A . n B 2 17 SER 17 24 24 SER SER A . n B 2 18 TYR 18 25 25 TYR TYR A . n B 2 19 CYS 19 26 26 CYS CYS A . n B 2 20 HIS 20 27 27 HIS HIS A . n B 2 21 PRO 21 28 28 PRO PRO A . n B 2 22 ILE 22 29 29 ILE ILE A . n B 2 23 GLU 23 30 30 GLU GLU A . n B 2 24 THR 24 31 31 THR THR A . n B 2 25 LEU 25 32 32 LEU LEU A . n B 2 26 VAL 26 33 33 VAL VAL A . n B 2 27 ASP 27 34 34 ASP ASP A . n B 2 28 ILE 28 35 35 ILE ILE A . n B 2 29 PHE 29 36 36 PHE PHE A . n B 2 30 GLN 30 37 37 GLN GLN A . n B 2 31 GLU 31 38 38 GLU GLU A . n B 2 32 TYR 32 39 39 TYR TYR A . n B 2 33 PRO 33 40 40 PRO PRO A . n B 2 34 ASP 34 41 41 ASP ASP A . n B 2 35 GLU 35 42 42 GLU GLU A . n B 2 36 ILE 36 43 43 ILE ILE A . n B 2 37 GLU 37 44 44 GLU GLU A . n B 2 38 TYR 38 45 45 TYR TYR A . n B 2 39 ILE 39 46 46 ILE ILE A . n B 2 40 PHE 40 47 47 PHE PHE A . n B 2 41 LYS 41 48 48 LYS LYS A . n B 2 42 PRO 42 49 49 PRO PRO A . n B 2 43 SER 43 50 50 SER SER A . n B 2 44 CYS 44 51 51 CYS CYS A . n B 2 45 VAL 45 52 52 VAL VAL A . n B 2 46 PRO 46 53 53 PRO PRO A . n B 2 47 LEU 47 54 54 LEU LEU A . n B 2 48 MET 48 55 55 MET MET A . n B 2 49 ARG 49 56 56 ARG ARG A . n B 2 50 CYS 50 57 57 CYS CYS A . n B 2 51 GLY 51 58 58 GLY GLY A . n B 2 52 GLY 52 59 59 GLY GLY A . n B 2 53 CYS 53 60 60 CYS CYS A . n B 2 54 CYS 54 61 61 CYS CYS A . n B 2 55 ASN 55 62 62 ASN ASN A . n B 2 56 ASP 56 63 63 ASP ASP A . n B 2 57 GLU 57 64 64 GLU GLU A . n B 2 58 GLY 58 65 65 GLY GLY A . n B 2 59 LEU 59 66 66 LEU LEU A . n B 2 60 GLU 60 67 67 GLU GLU A . n B 2 61 CYS 61 68 68 CYS CYS A . n B 2 62 VAL 62 69 69 VAL VAL A . n B 2 63 PRO 63 70 70 PRO PRO A . n B 2 64 THR 64 71 71 THR THR A . n B 2 65 GLU 65 72 72 GLU GLU A . n B 2 66 GLU 66 73 73 GLU GLU A . n B 2 67 SER 67 74 74 SER SER A . n B 2 68 ASN 68 75 75 ASN ASN A . n B 2 69 ILE 69 76 76 ILE ILE A . n B 2 70 THR 70 77 77 THR THR A . n B 2 71 MET 71 78 78 MET MET A . n B 2 72 GLN 72 79 79 GLN GLN A . n B 2 73 ILE 73 80 80 ILE ILE A . n B 2 74 MET 74 81 81 MET MET A . n B 2 75 ARG 75 82 82 ARG ARG A . n B 2 76 ILE 76 83 83 ILE ILE A . n B 2 77 LYS 77 84 84 LYS LYS A . n B 2 78 PRO 78 85 85 PRO PRO A . n B 2 79 HIS 79 86 86 HIS HIS A . n B 2 80 GLN 80 87 87 GLN GLN A . n B 2 81 GLY 81 88 88 GLY GLY A . n B 2 82 GLN 82 89 89 GLN GLN A . n B 2 83 HIS 83 90 90 HIS HIS A . n B 2 84 ILE 84 91 91 ILE ILE A . n B 2 85 GLY 85 92 92 GLY GLY A . n B 2 86 GLU 86 93 93 GLU GLU A . n B 2 87 MET 87 94 94 MET MET A . n B 2 88 SER 88 95 95 SER SER A . n B 2 89 PHE 89 96 96 PHE PHE A . n B 2 90 LEU 90 97 97 LEU LEU A . n B 2 91 GLN 91 98 98 GLN GLN A . n B 2 92 HIS 92 99 99 HIS HIS A . n B 2 93 ASN 93 100 100 ASN ASN A . n B 2 94 LYS 94 101 101 LYS LYS A . n B 2 95 CYS 95 102 102 CYS CYS A . n B 2 96 GLU 96 103 103 GLU GLU A . n B 2 97 CYS 97 104 104 CYS CYS A . n B 2 98 ARG 98 105 105 ARG ARG A . n B 2 99 PRO 99 106 106 PRO PRO A . n B 2 100 LYS 100 107 107 LYS LYS A . n B 2 101 LYS 101 108 108 LYS LYS A . n B 2 102 ASP 102 109 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 101 101 SO4 SO4 C . D 4 HOH 1 201 201 HOH HOH C . D 4 HOH 2 202 202 HOH HOH C . D 4 HOH 3 203 204 HOH HOH C . D 4 HOH 4 204 203 HOH HOH C . D 4 HOH 5 205 205 HOH HOH C . D 4 HOH 6 206 207 HOH HOH C . D 4 HOH 7 207 206 HOH HOH C . D 4 HOH 8 208 208 HOH HOH C . D 4 HOH 9 209 209 HOH HOH C . D 4 HOH 10 210 211 HOH HOH C . D 4 HOH 11 211 210 HOH HOH C . D 4 HOH 12 212 213 HOH HOH C . D 4 HOH 13 213 214 HOH HOH C . D 4 HOH 14 214 212 HOH HOH C . D 4 HOH 15 215 215 HOH HOH C . D 4 HOH 16 216 219 HOH HOH C . D 4 HOH 17 217 216 HOH HOH C . D 4 HOH 18 218 217 HOH HOH C . D 4 HOH 19 219 218 HOH HOH C . D 4 HOH 20 220 221 HOH HOH C . D 4 HOH 21 221 220 HOH HOH C . D 4 HOH 22 222 223 HOH HOH C . D 4 HOH 23 223 222 HOH HOH C . D 4 HOH 24 224 225 HOH HOH C . D 4 HOH 25 225 227 HOH HOH C . D 4 HOH 26 226 224 HOH HOH C . D 4 HOH 27 227 226 HOH HOH C . D 4 HOH 28 228 229 HOH HOH C . D 4 HOH 29 229 230 HOH HOH C . D 4 HOH 30 230 228 HOH HOH C . D 4 HOH 31 231 234 HOH HOH C . D 4 HOH 32 232 231 HOH HOH C . D 4 HOH 33 233 235 HOH HOH C . D 4 HOH 34 234 232 HOH HOH C . D 4 HOH 35 235 236 HOH HOH C . D 4 HOH 36 236 233 HOH HOH C . D 4 HOH 37 237 237 HOH HOH C . D 4 HOH 38 238 238 HOH HOH C . D 4 HOH 39 239 241 HOH HOH C . D 4 HOH 40 240 240 HOH HOH C . D 4 HOH 41 241 239 HOH HOH C . D 4 HOH 42 242 242 HOH HOH C . D 4 HOH 43 243 243 HOH HOH C . D 4 HOH 44 244 244 HOH HOH C . D 4 HOH 45 245 245 HOH HOH C . D 4 HOH 46 246 246 HOH HOH C . D 4 HOH 47 247 247 HOH HOH C . D 4 HOH 48 248 248 HOH HOH C . D 4 HOH 49 249 249 HOH HOH C . D 4 HOH 50 250 250 HOH HOH C . D 4 HOH 51 251 251 HOH HOH C . D 4 HOH 52 252 252 HOH HOH C . D 4 HOH 53 253 253 HOH HOH C . D 4 HOH 54 254 254 HOH HOH C . D 4 HOH 55 255 255 HOH HOH C . E 4 HOH 1 201 201 HOH HOH A . E 4 HOH 2 202 202 HOH HOH A . E 4 HOH 3 203 205 HOH HOH A . E 4 HOH 4 204 204 HOH HOH A . E 4 HOH 5 205 203 HOH HOH A . E 4 HOH 6 206 207 HOH HOH A . E 4 HOH 7 207 211 HOH HOH A . E 4 HOH 8 208 212 HOH HOH A . E 4 HOH 9 209 206 HOH HOH A . E 4 HOH 10 210 208 HOH HOH A . E 4 HOH 11 211 216 HOH HOH A . E 4 HOH 12 212 213 HOH HOH A . E 4 HOH 13 213 209 HOH HOH A . E 4 HOH 14 214 214 HOH HOH A . E 4 HOH 15 215 217 HOH HOH A . E 4 HOH 16 216 218 HOH HOH A . E 4 HOH 17 217 226 HOH HOH A . E 4 HOH 18 218 210 HOH HOH A . E 4 HOH 19 219 220 HOH HOH A . E 4 HOH 20 220 215 HOH HOH A . E 4 HOH 21 221 225 HOH HOH A . E 4 HOH 22 222 219 HOH HOH A . E 4 HOH 23 223 221 HOH HOH A . E 4 HOH 24 224 224 HOH HOH A . E 4 HOH 25 225 223 HOH HOH A . E 4 HOH 26 226 222 HOH HOH A . E 4 HOH 27 227 252 HOH HOH A . E 4 HOH 28 228 227 HOH HOH A . E 4 HOH 29 229 231 HOH HOH A . E 4 HOH 30 230 229 HOH HOH A . E 4 HOH 31 231 234 HOH HOH A . E 4 HOH 32 232 228 HOH HOH A . E 4 HOH 33 233 236 HOH HOH A . E 4 HOH 34 234 230 HOH HOH A . E 4 HOH 35 235 232 HOH HOH A . E 4 HOH 36 236 233 HOH HOH A . E 4 HOH 37 237 235 HOH HOH A . E 4 HOH 38 238 238 HOH HOH A . E 4 HOH 39 239 237 HOH HOH A . E 4 HOH 40 240 239 HOH HOH A . E 4 HOH 41 241 241 HOH HOH A . E 4 HOH 42 242 240 HOH HOH A . E 4 HOH 43 243 242 HOH HOH A . E 4 HOH 44 244 243 HOH HOH A . E 4 HOH 45 245 244 HOH HOH A . E 4 HOH 46 246 245 HOH HOH A . E 4 HOH 47 247 250 HOH HOH A . E 4 HOH 48 248 251 HOH HOH A . E 4 HOH 49 249 249 HOH HOH A . E 4 HOH 50 250 247 HOH HOH A . E 4 HOH 51 251 248 HOH HOH A . E 4 HOH 52 252 261 HOH HOH A . E 4 HOH 53 253 253 HOH HOH A . E 4 HOH 54 254 256 HOH HOH A . E 4 HOH 55 255 257 HOH HOH A . E 4 HOH 56 256 258 HOH HOH A . E 4 HOH 57 257 246 HOH HOH A . E 4 HOH 58 258 254 HOH HOH A . E 4 HOH 59 259 255 HOH HOH A . E 4 HOH 60 260 265 HOH HOH A . E 4 HOH 61 261 259 HOH HOH A . E 4 HOH 62 262 260 HOH HOH A . E 4 HOH 63 263 262 HOH HOH A . E 4 HOH 64 264 263 HOH HOH A . E 4 HOH 65 265 264 HOH HOH A . E 4 HOH 66 266 273 HOH HOH A . E 4 HOH 67 267 267 HOH HOH A . E 4 HOH 68 268 266 HOH HOH A . E 4 HOH 69 269 271 HOH HOH A . E 4 HOH 70 270 268 HOH HOH A . E 4 HOH 71 271 269 HOH HOH A . E 4 HOH 72 272 270 HOH HOH A . E 4 HOH 73 273 272 HOH HOH A . E 4 HOH 74 274 274 HOH HOH A . E 4 HOH 75 275 275 HOH HOH A . E 4 HOH 76 276 276 HOH HOH A . E 4 HOH 77 277 281 HOH HOH A . E 4 HOH 78 278 279 HOH HOH A . E 4 HOH 79 279 280 HOH HOH A . E 4 HOH 80 280 278 HOH HOH A . E 4 HOH 81 281 277 HOH HOH A . E 4 HOH 82 282 282 HOH HOH A . E 4 HOH 83 283 283 HOH HOH A . E 4 HOH 84 284 285 HOH HOH A . E 4 HOH 85 285 284 HOH HOH A . E 4 HOH 86 286 286 HOH HOH A . E 4 HOH 87 287 287 HOH HOH A . E 4 HOH 88 288 288 HOH HOH A . E 4 HOH 89 289 290 HOH HOH A . E 4 HOH 90 290 289 HOH HOH A . E 4 HOH 91 291 291 HOH HOH A . E 4 HOH 92 292 292 HOH HOH A . E 4 HOH 93 293 294 HOH HOH A . E 4 HOH 94 294 293 HOH HOH A . E 4 HOH 95 295 295 HOH HOH A . E 4 HOH 96 296 297 HOH HOH A . E 4 HOH 97 297 299 HOH HOH A . E 4 HOH 98 298 296 HOH HOH A . E 4 HOH 99 299 298 HOH HOH A . E 4 HOH 100 300 300 HOH HOH A . E 4 HOH 101 301 301 HOH HOH A . E 4 HOH 102 302 302 HOH HOH A . E 4 HOH 103 303 303 HOH HOH A . E 4 HOH 104 304 304 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 12 ? CG ? B HIS 5 CG 2 1 Y 1 A HIS 12 ? ND1 ? B HIS 5 ND1 3 1 Y 1 A HIS 12 ? CD2 ? B HIS 5 CD2 4 1 Y 1 A HIS 12 ? CE1 ? B HIS 5 CE1 5 1 Y 1 A HIS 12 ? NE2 ? B HIS 5 NE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0425 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9JU1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.982 _cell.length_a_esd ? _cell.length_b 42.982 _cell.length_b_esd ? _cell.length_c 309.665 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9JU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9JU1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method COUNTER-DIFFUSION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 8.0, 0.2M NaCl, 2.5M Ammonium Sulfate, 0.04% NaN3' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-21 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9JU1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 44.24 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31964 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.70 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.061 _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 652847 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.47 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all 30171 _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1558 _reflns_shell.percent_possible_obs 100.0 _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 19.4 _reflns_shell.pdbx_chi_squared 0.15 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs 1.8 _reflns_shell.pdbx_Rrim_I_all 0.807 _reflns_shell.pdbx_Rpim_I_all 0.183 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.920 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.786 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.497 _refine.aniso_B[1][2] 0.248 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.497 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -1.611 _refine.B_iso_max ? _refine.B_iso_mean 27.699 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9JU1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 37.251 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31791 _refine.ls_number_reflns_R_free 1533 _refine.ls_number_reflns_R_work 30258 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.981 _refine.ls_percent_reflns_R_free 4.822 _refine.ls_R_factor_all 0.217 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2156 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.246 _refine.ls_wR_factor_R_work 0.212 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.072 _refine.pdbx_overall_ESU_R_Free 0.074 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.603 _refine.overall_SU_ML 0.061 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9583 _refine.pdbx_average_fsc_free 0.9437 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 37.251 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 1281 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.012 1150 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 1061 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.919 1.851 1554 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.627 1.766 2465 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.764 5.000 138 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 9.013 5.000 4 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.517 10.000 207 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 14.071 10.000 56 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.091 0.200 165 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1320 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 240 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.207 0.200 201 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.192 0.200 925 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.177 0.200 541 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.085 0.200 633 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.136 0.200 94 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.155 0.200 22 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.155 0.200 89 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.248 0.200 33 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.854 2.746 559 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.846 2.745 559 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.174 4.915 696 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.175 4.918 697 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.637 3.367 591 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.633 3.370 592 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 7.197 5.856 858 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.193 5.859 859 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 8.907 35.940 1285 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 8.866 34.175 1262 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.450 1.488 2303 . 115 2188 100.0000 . 0.297 . . 0.295 . . . . . 0.279 . 20 . 0.929 0.917 0.339 'X-RAY DIFFRACTION' 1.488 1.528 2197 . 105 2092 100.0000 . 0.269 . . 0.267 . . . . . 0.242 . 20 . 0.942 0.920 0.312 'X-RAY DIFFRACTION' 1.528 1.573 2140 . 109 2031 100.0000 . 0.261 . . 0.260 . . . . . 0.236 . 20 . 0.946 0.939 0.279 'X-RAY DIFFRACTION' 1.573 1.621 2118 . 91 2027 100.0000 . 0.258 . . 0.258 . . . . . 0.229 . 20 . 0.950 0.951 0.260 'X-RAY DIFFRACTION' 1.621 1.674 2044 . 98 1946 100.0000 . 0.252 . . 0.251 . . . . . 0.222 . 20 . 0.954 0.941 0.280 'X-RAY DIFFRACTION' 1.674 1.733 1989 . 99 1890 100.0000 . 0.250 . . 0.247 . . . . . 0.216 . 20 . 0.957 0.926 0.316 'X-RAY DIFFRACTION' 1.733 1.798 1922 . 89 1833 100.0000 . 0.253 . . 0.250 . . . . . 0.220 . 20 . 0.956 0.927 0.319 'X-RAY DIFFRACTION' 1.798 1.871 1863 . 98 1765 100.0000 . 0.236 . . 0.232 . . . . . 0.206 . 20 . 0.961 0.942 0.302 'X-RAY DIFFRACTION' 1.871 1.954 1795 . 98 1697 100.0000 . 0.242 . . 0.240 . . . . . 0.218 . 20 . 0.958 0.944 0.277 'X-RAY DIFFRACTION' 1.954 2.049 1690 . 66 1624 100.0000 . 0.247 . . 0.245 . . . . . 0.227 . 20 . 0.960 0.934 0.294 'X-RAY DIFFRACTION' 2.049 2.160 1638 . 91 1547 100.0000 . 0.226 . . 0.223 . . . . . 0.209 . 20 . 0.969 0.947 0.279 'X-RAY DIFFRACTION' 2.160 2.290 1535 . 71 1464 100.0000 . 0.211 . . 0.210 . . . . . 0.200 . 20 . 0.971 0.956 0.240 'X-RAY DIFFRACTION' 2.290 2.448 1473 . 70 1403 100.0000 . 0.204 . . 0.202 . . . . . 0.195 . 20 . 0.972 0.970 0.234 'X-RAY DIFFRACTION' 2.448 2.643 1392 . 65 1327 100.0000 . 0.212 . . 0.210 . . . . . 0.204 . 20 . 0.970 0.955 0.255 'X-RAY DIFFRACTION' 2.643 2.893 1294 . 63 1231 100.0000 . 0.210 . . 0.208 . . . . . 0.205 . 20 . 0.970 0.955 0.254 'X-RAY DIFFRACTION' 2.893 3.233 1183 . 64 1119 100.0000 . 0.220 . . 0.221 . . . . . 0.224 . 20 . 0.968 0.969 0.210 'X-RAY DIFFRACTION' 3.233 3.728 1061 . 53 1008 100.0000 . 0.195 . . 0.193 . . . . . 0.205 . 20 . 0.977 0.959 0.238 'X-RAY DIFFRACTION' 3.728 4.554 912 . 48 864 100.0000 . 0.166 . . 0.164 . . . . . 0.180 . 20 . 0.984 0.977 0.190 'X-RAY DIFFRACTION' 4.554 6.393 753 . 23 730 100.0000 . 0.205 . . 0.206 . . . . . 0.229 . 20 . 0.980 0.982 0.165 'X-RAY DIFFRACTION' 6.393 37.251 494 . 17 472 98.9879 . 0.255 . . 0.253 . . . . . 0.278 . 20 . 0.951 0.961 0.291 # _struct.entry_id 9JU1 _struct.title 'Helix-loop-helix peptide (VS42-LR3) in complex with VEGF-A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9JU1 _struct_keywords.text 'Helix-loop-helix, Inhibitor, complex, DE NOVO PROTEIN, IMMUNE SYSTEM-DE NOVO PROTEIN complex' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM/DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9JU1 9JU1 ? 1 ? 1 2 UNP VEGFA_HUMAN P15692 ? 2 ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; 214 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9JU1 C 1 ? 44 ? 9JU1 1 ? 44 ? 1 44 2 2 9JU1 A 1 ? 102 ? P15692 214 ? 315 ? 8 109 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6240 ? 1 MORE -58 ? 1 'SSA (A^2)' 15110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 21.4910000000 -0.8660254038 -0.5000000000 0.0000000000 37.2235039055 0.0000000000 0.0000000000 -1.0000000000 51.6108333333 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 1 ? GLY A 17 ? CYS C 1 GLY C 17 1 ? 17 HELX_P HELX_P2 AA2 PRO A 25 ? CYS A 43 ? PRO C 25 CYS C 43 1 ? 19 HELX_P HELX_P3 AA3 LYS B 9 ? TYR B 18 ? LYS A 16 TYR A 25 1 ? 10 HELX_P HELX_P4 AA4 ILE B 28 ? TYR B 32 ? ILE A 35 TYR A 39 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 43 SG ? ? C CYS 1 C CYS 43 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf2 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 61 SG ? ? A CYS 26 A CYS 68 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? B CYS 44 SG ? ? ? 1_555 B CYS 53 SG ? ? A CYS 51 A CYS 60 10_665 ? ? ? ? ? ? ? 2.339 ? ? disulf4 disulf ? ? B CYS 50 SG ? ? ? 1_555 B CYS 95 SG ? ? A CYS 57 A CYS 102 1_555 ? ? ? ? ? ? ? 1.979 ? ? disulf5 disulf ? ? B CYS 54 SG ? ? ? 1_555 B CYS 97 SG ? ? A CYS 61 A CYS 104 1_555 ? ? ? ? ? ? ? 2.118 ? ? covale1 covale both ? A CYS 43 C ? ? ? 1_555 A NH2 44 N ? ? C CYS 43 C NH2 44 1_555 ? ? ? ? ? ? ? 1.325 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 44 ? CYS A 43 ? NH2 C 44 ? 1_555 CYS C 43 ? 1_555 . . CYS 11 NH2 None 'Terminal amidation' 2 CYS A 1 ? CYS A 43 ? CYS C 1 ? 1_555 CYS C 43 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 19 ? CYS B 61 ? CYS A 26 ? 1_555 CYS A 68 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 44 ? CYS B 53 ? CYS A 51 ? 1_555 CYS A 60 ? 10_665 SG SG . . . None 'Disulfide bridge' 5 CYS B 50 ? CYS B 95 ? CYS A 57 ? 1_555 CYS A 102 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 54 ? CYS B 97 ? CYS A 61 ? 1_555 CYS A 104 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 41 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 48 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 42 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 49 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.79 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS B 20 ? ASP B 27 ? HIS A 27 ASP A 34 AA1 2 CYS B 44 ? GLY B 51 ? CYS A 51 GLY A 58 AA2 1 ILE B 39 ? LYS B 41 ? ILE A 46 LYS A 48 AA2 2 LEU B 59 ? LYS B 77 ? LEU A 66 LYS A 84 AA2 3 GLY B 81 ? PRO B 99 ? GLY A 88 PRO A 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR B 24 ? N THR A 31 O LEU B 47 ? O LEU A 54 AA2 1 2 N ILE B 39 ? N ILE A 46 O ILE B 76 ? O ILE A 83 AA2 2 3 N ARG B 75 ? N ARG A 82 O HIS B 83 ? O HIS A 90 # _pdbx_entry_details.entry_id 9JU1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 56 ? ? CZ A ARG 56 ? ? NH1 A ARG 56 ? ? 126.97 120.30 6.67 0.50 N 2 1 NE A ARG 56 ? ? CZ A ARG 56 ? ? NH2 A ARG 56 ? ? 115.88 120.30 -4.42 0.50 N 3 1 NE A ARG 105 ? ? CZ A ARG 105 ? ? NH2 A ARG 105 ? ? 115.89 120.30 -4.41 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 26 ? ? -24.95 115.22 2 1 GLN A 87 ? ? -137.78 -75.83 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 82 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.085 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 230 ? E HOH . 2 1 A HOH 236 ? E HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 8 ? B GLY 1 2 1 Y 1 A GLN 9 ? B GLN 2 3 1 Y 1 A ASN 10 ? B ASN 3 4 1 Y 1 A HIS 11 ? B HIS 4 5 1 Y 1 A ASP 109 ? B ASP 102 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 NH2 N N N N 250 NH2 HN1 H N N 251 NH2 HN2 H N N 252 PHE N N N N 253 PHE CA C N S 254 PHE C C N N 255 PHE O O N N 256 PHE CB C N N 257 PHE CG C Y N 258 PHE CD1 C Y N 259 PHE CD2 C Y N 260 PHE CE1 C Y N 261 PHE CE2 C Y N 262 PHE CZ C Y N 263 PHE OXT O N N 264 PHE H H N N 265 PHE H2 H N N 266 PHE HA H N N 267 PHE HB2 H N N 268 PHE HB3 H N N 269 PHE HD1 H N N 270 PHE HD2 H N N 271 PHE HE1 H N N 272 PHE HE2 H N N 273 PHE HZ H N N 274 PHE HXT H N N 275 PRO N N N N 276 PRO CA C N S 277 PRO C C N N 278 PRO O O N N 279 PRO CB C N N 280 PRO CG C N N 281 PRO CD C N N 282 PRO OXT O N N 283 PRO H H N N 284 PRO HA H N N 285 PRO HB2 H N N 286 PRO HB3 H N N 287 PRO HG2 H N N 288 PRO HG3 H N N 289 PRO HD2 H N N 290 PRO HD3 H N N 291 PRO HXT H N N 292 SER N N N N 293 SER CA C N S 294 SER C C N N 295 SER O O N N 296 SER CB C N N 297 SER OG O N N 298 SER OXT O N N 299 SER H H N N 300 SER H2 H N N 301 SER HA H N N 302 SER HB2 H N N 303 SER HB3 H N N 304 SER HG H N N 305 SER HXT H N N 306 SO4 S S N N 307 SO4 O1 O N N 308 SO4 O2 O N N 309 SO4 O3 O N N 310 SO4 O4 O N N 311 THR N N N N 312 THR CA C N S 313 THR C C N N 314 THR O O N N 315 THR CB C N R 316 THR OG1 O N N 317 THR CG2 C N N 318 THR OXT O N N 319 THR H H N N 320 THR H2 H N N 321 THR HA H N N 322 THR HB H N N 323 THR HG1 H N N 324 THR HG21 H N N 325 THR HG22 H N N 326 THR HG23 H N N 327 THR HXT H N N 328 TRP N N N N 329 TRP CA C N S 330 TRP C C N N 331 TRP O O N N 332 TRP CB C N N 333 TRP CG C Y N 334 TRP CD1 C Y N 335 TRP CD2 C Y N 336 TRP NE1 N Y N 337 TRP CE2 C Y N 338 TRP CE3 C Y N 339 TRP CZ2 C Y N 340 TRP CZ3 C Y N 341 TRP CH2 C Y N 342 TRP OXT O N N 343 TRP H H N N 344 TRP H2 H N N 345 TRP HA H N N 346 TRP HB2 H N N 347 TRP HB3 H N N 348 TRP HD1 H N N 349 TRP HE1 H N N 350 TRP HE3 H N N 351 TRP HZ2 H N N 352 TRP HZ3 H N N 353 TRP HH2 H N N 354 TRP HXT H N N 355 TYR N N N N 356 TYR CA C N S 357 TYR C C N N 358 TYR O O N N 359 TYR CB C N N 360 TYR CG C Y N 361 TYR CD1 C Y N 362 TYR CD2 C Y N 363 TYR CE1 C Y N 364 TYR CE2 C Y N 365 TYR CZ C Y N 366 TYR OH O N N 367 TYR OXT O N N 368 TYR H H N N 369 TYR H2 H N N 370 TYR HA H N N 371 TYR HB2 H N N 372 TYR HB3 H N N 373 TYR HD1 H N N 374 TYR HD2 H N N 375 TYR HE1 H N N 376 TYR HE2 H N N 377 TYR HH H N N 378 TYR HXT H N N 379 VAL N N N N 380 VAL CA C N S 381 VAL C C N N 382 VAL O O N N 383 VAL CB C N N 384 VAL CG1 C N N 385 VAL CG2 C N N 386 VAL OXT O N N 387 VAL H H N N 388 VAL H2 H N N 389 VAL HA H N N 390 VAL HB H N N 391 VAL HG11 H N N 392 VAL HG12 H N N 393 VAL HG13 H N N 394 VAL HG21 H N N 395 VAL HG22 H N N 396 VAL HG23 H N N 397 VAL HXT H N N 398 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NH2 N HN1 sing N N 237 NH2 N HN2 sing N N 238 PHE N CA sing N N 239 PHE N H sing N N 240 PHE N H2 sing N N 241 PHE CA C sing N N 242 PHE CA CB sing N N 243 PHE CA HA sing N N 244 PHE C O doub N N 245 PHE C OXT sing N N 246 PHE CB CG sing N N 247 PHE CB HB2 sing N N 248 PHE CB HB3 sing N N 249 PHE CG CD1 doub Y N 250 PHE CG CD2 sing Y N 251 PHE CD1 CE1 sing Y N 252 PHE CD1 HD1 sing N N 253 PHE CD2 CE2 doub Y N 254 PHE CD2 HD2 sing N N 255 PHE CE1 CZ doub Y N 256 PHE CE1 HE1 sing N N 257 PHE CE2 CZ sing Y N 258 PHE CE2 HE2 sing N N 259 PHE CZ HZ sing N N 260 PHE OXT HXT sing N N 261 PRO N CA sing N N 262 PRO N CD sing N N 263 PRO N H sing N N 264 PRO CA C sing N N 265 PRO CA CB sing N N 266 PRO CA HA sing N N 267 PRO C O doub N N 268 PRO C OXT sing N N 269 PRO CB CG sing N N 270 PRO CB HB2 sing N N 271 PRO CB HB3 sing N N 272 PRO CG CD sing N N 273 PRO CG HG2 sing N N 274 PRO CG HG3 sing N N 275 PRO CD HD2 sing N N 276 PRO CD HD3 sing N N 277 PRO OXT HXT sing N N 278 SER N CA sing N N 279 SER N H sing N N 280 SER N H2 sing N N 281 SER CA C sing N N 282 SER CA CB sing N N 283 SER CA HA sing N N 284 SER C O doub N N 285 SER C OXT sing N N 286 SER CB OG sing N N 287 SER CB HB2 sing N N 288 SER CB HB3 sing N N 289 SER OG HG sing N N 290 SER OXT HXT sing N N 291 SO4 S O1 doub N N 292 SO4 S O2 doub N N 293 SO4 S O3 sing N N 294 SO4 S O4 sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TRP N CA sing N N 312 TRP N H sing N N 313 TRP N H2 sing N N 314 TRP CA C sing N N 315 TRP CA CB sing N N 316 TRP CA HA sing N N 317 TRP C O doub N N 318 TRP C OXT sing N N 319 TRP CB CG sing N N 320 TRP CB HB2 sing N N 321 TRP CB HB3 sing N N 322 TRP CG CD1 doub Y N 323 TRP CG CD2 sing Y N 324 TRP CD1 NE1 sing Y N 325 TRP CD1 HD1 sing N N 326 TRP CD2 CE2 doub Y N 327 TRP CD2 CE3 sing Y N 328 TRP NE1 CE2 sing Y N 329 TRP NE1 HE1 sing N N 330 TRP CE2 CZ2 sing Y N 331 TRP CE3 CZ3 doub Y N 332 TRP CE3 HE3 sing N N 333 TRP CZ2 CH2 doub Y N 334 TRP CZ2 HZ2 sing N N 335 TRP CZ3 CH2 sing Y N 336 TRP CZ3 HZ3 sing N N 337 TRP CH2 HH2 sing N N 338 TRP OXT HXT sing N N 339 TYR N CA sing N N 340 TYR N H sing N N 341 TYR N H2 sing N N 342 TYR CA C sing N N 343 TYR CA CB sing N N 344 TYR CA HA sing N N 345 TYR C O doub N N 346 TYR C OXT sing N N 347 TYR CB CG sing N N 348 TYR CB HB2 sing N N 349 TYR CB HB3 sing N N 350 TYR CG CD1 doub Y N 351 TYR CG CD2 sing Y N 352 TYR CD1 CE1 sing Y N 353 TYR CD1 HD1 sing N N 354 TYR CD2 CE2 doub Y N 355 TYR CD2 HD2 sing N N 356 TYR CE1 CZ doub Y N 357 TYR CE1 HE1 sing N N 358 TYR CE2 CZ sing Y N 359 TYR CE2 HE2 sing N N 360 TYR CZ OH sing N N 361 TYR OH HH sing N N 362 TYR OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # _pdbx_audit_support.funding_organization 'Japan Agency for Medical Research and Development (AMED)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number JP24am121036 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1vpf _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9JU1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.023266 _atom_sites.fract_transf_matrix[1][2] 0.013432 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026865 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003229 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_