HEADER TRANSCRIPTION 07-OCT-24 9JUA TITLE THE COMPLEX OF ENY2B AND SGF11 OF DROSOPHILA MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENHANCER OF YELLOW 2B TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: TESTIS-SPECIFIC E(Y)2 PARALOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SAGA-ASSOCIATED FACTOR 11 HOMOLOG; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: E(Y)2B, CG14612; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 GENE: SGF11, CG13379; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.N.BONCHUK,A.Y.NIKOLAEVA,O.V.ARKOVA,E.V.BELOVA, AUTHOR 2 P.G.GEORGIEV,V.O.POPOV REVDAT 1 08-OCT-25 9JUA 0 JRNL AUTH K.M.BOYKO,A.Y.NIKOLAEVA,A.N.BONCHUK,O.V.ARKOVA,E.V.BELOVA, JRNL AUTH 2 P.G.GEORGIEV,V.O.POPOV JRNL TITL THE COMPLEX OF ENY2B AND SGF11 OF DROSOPHILA MELANOGASTER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 7656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 595 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -41.70000 REMARK 3 B22 (A**2) : 32.25000 REMARK 3 B33 (A**2) : 9.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -18.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1548 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1436 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2101 ; 2.341 ; 1.809 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3298 ; 1.123 ; 1.767 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 9.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ;19.652 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;20.225 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1856 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 332 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 824 ;14.511 ; 9.874 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 824 ;14.508 ; 9.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ;19.831 ;17.866 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1024 ;19.826 ;17.869 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 724 ;14.851 ; 9.987 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 725 ;14.842 ; 9.988 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1079 ;19.866 ;18.366 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5871 ;27.508 ;16.250 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5872 ;27.508 ;16.240 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9JUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 18.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 1.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0; 20% ISOPROPANOL, 22% REMARK 280 PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.97900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.77700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.97900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.77700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 TYR A 15 REMARK 465 LYS A 16 REMARK 465 PRO A 17 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ILE C 3 REMARK 465 ASN C 4 REMARK 465 LYS C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 THR C 9 REMARK 465 ASP C 10 REMARK 465 PRO C 11 REMARK 465 ASP C 12 REMARK 465 PRO C 13 REMARK 465 GLY C 14 REMARK 465 TYR C 15 REMARK 465 LYS C 16 REMARK 465 PRO C 17 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 THR B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 LEU B 30 REMARK 465 ARG B 31 REMARK 465 LYS B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 ASN B 35 REMARK 465 LEU B 36 REMARK 465 ALA B 37 REMARK 465 ALA B 38 REMARK 465 LEU B 39 REMARK 465 ASP B 40 REMARK 465 GLY B 41 REMARK 465 VAL B 42 REMARK 465 HIS D 28 REMARK 465 HIS D 29 REMARK 465 LEU D 30 REMARK 465 ARG D 31 REMARK 465 LYS D 32 REMARK 465 SER D 33 REMARK 465 GLY D 34 REMARK 465 ASN D 35 REMARK 465 LEU D 36 REMARK 465 ALA D 37 REMARK 465 ALA D 38 REMARK 465 LEU D 39 REMARK 465 ASP D 40 REMARK 465 GLY D 41 REMARK 465 VAL D 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 19 CG CD1 CD2 REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ILE A 51 CG1 CG2 CD1 REMARK 470 MET A 53 CG SD CE REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 GLN A 64 CG CD OE1 NE2 REMARK 470 LEU A 65 CG CD1 CD2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 LEU C 19 CG CD1 CD2 REMARK 470 ARG C 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 LYS C 45 CG CD CE NZ REMARK 470 ARG C 55 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 60 CG1 CG2 CD1 REMARK 470 ARG C 62 NE CZ NH1 NH2 REMARK 470 LEU C 65 CG CD1 CD2 REMARK 470 ASP C 94 CG OD1 OD2 REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 SER D 1 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 79 CD GLU A 79 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASN B 25 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 138.74 -39.65 REMARK 500 ASP A 63 -25.73 82.64 REMARK 500 GLN A 64 26.50 -64.62 REMARK 500 LEU A 65 -62.42 -162.48 REMARK 500 PRO A 78 138.65 -37.67 REMARK 500 ALA A 92 -63.01 177.63 REMARK 500 ILE C 60 110.96 -27.40 REMARK 500 ASN C 61 43.41 -143.02 REMARK 500 ASP C 63 57.35 10.29 REMARK 500 PRO C 78 137.81 -37.39 REMARK 500 ALA C 92 -61.88 169.50 REMARK 500 ASP D 5 -87.27 -76.30 REMARK 500 GLU D 26 84.78 -67.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 64 LEU A 65 -144.61 REMARK 500 ASP C 63 GLN C 64 148.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 88 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9JUA A 1 95 UNP Q9VI60 ENY2B_DROME 1 95 DBREF 9JUA C 1 95 UNP Q9VI60 ENY2B_DROME 1 95 DBREF 9JUA B 4 42 UNP Q9VVR6 SGF11_DROME 40 78 DBREF 9JUA D 4 42 UNP Q9VVR6 SGF11_DROME 40 78 SEQADV 9JUA SER B 1 UNP Q9VVR6 EXPRESSION TAG SEQADV 9JUA GLY B 2 UNP Q9VVR6 EXPRESSION TAG SEQADV 9JUA SER B 3 UNP Q9VVR6 EXPRESSION TAG SEQADV 9JUA SER D 1 UNP Q9VVR6 EXPRESSION TAG SEQADV 9JUA GLY D 2 UNP Q9VVR6 EXPRESSION TAG SEQADV 9JUA SER D 3 UNP Q9VVR6 EXPRESSION TAG SEQRES 1 A 95 MET THR ILE ASN LYS GLU THR GLY THR ASP PRO ASP PRO SEQRES 2 A 95 GLY TYR LYS PRO THR LEU ARG SER GLN ASP LYS ALA ALA SEQRES 3 A 95 LEU LYS GLU LEU LEU HIS THR ARG LEU VAL GLU CYS GLY SEQRES 4 A 95 TRP HIS LYS ASP ILE LYS GLU MET ILE ARG ASN ILE ILE SEQRES 5 A 95 MET GLU ARG GLY VAL ASP ASN ILE ASN ARG ASP GLN LEU SEQRES 6 A 95 ALA ALA GLN ILE VAL PRO GLN ALA ARG ALA LEU VAL PRO SEQRES 7 A 95 GLU VAL VAL LYS ASN GLU MET MET LEU ARG VAL HIS ALA SEQRES 8 A 95 ALA LEU ASP LYS SEQRES 1 C 95 MET THR ILE ASN LYS GLU THR GLY THR ASP PRO ASP PRO SEQRES 2 C 95 GLY TYR LYS PRO THR LEU ARG SER GLN ASP LYS ALA ALA SEQRES 3 C 95 LEU LYS GLU LEU LEU HIS THR ARG LEU VAL GLU CYS GLY SEQRES 4 C 95 TRP HIS LYS ASP ILE LYS GLU MET ILE ARG ASN ILE ILE SEQRES 5 C 95 MET GLU ARG GLY VAL ASP ASN ILE ASN ARG ASP GLN LEU SEQRES 6 C 95 ALA ALA GLN ILE VAL PRO GLN ALA ARG ALA LEU VAL PRO SEQRES 7 C 95 GLU VAL VAL LYS ASN GLU MET MET LEU ARG VAL HIS ALA SEQRES 8 C 95 ALA LEU ASP LYS SEQRES 1 B 42 SER GLY SER LEU ASP GLU ALA ALA ASN TYR LEU TYR GLN SEQRES 2 B 42 SER LEU LEU ASP ASP ALA VAL VAL GLY ILE PHE ASN GLU SEQRES 3 B 42 THR HIS HIS LEU ARG LYS SER GLY ASN LEU ALA ALA LEU SEQRES 4 B 42 ASP GLY VAL SEQRES 1 D 42 SER GLY SER LEU ASP GLU ALA ALA ASN TYR LEU TYR GLN SEQRES 2 D 42 SER LEU LEU ASP ASP ALA VAL VAL GLY ILE PHE ASN GLU SEQRES 3 D 42 THR HIS HIS LEU ARG LYS SER GLY ASN LEU ALA ALA LEU SEQRES 4 D 42 ASP GLY VAL HELIX 1 AA1 ARG A 20 CYS A 38 1 19 HELIX 2 AA2 GLY A 39 GLY A 56 1 18 HELIX 3 AA3 ILE A 69 LEU A 76 1 8 HELIX 4 AA4 PRO A 78 ASP A 94 1 17 HELIX 5 AA5 ARG C 20 CYS C 38 1 19 HELIX 6 AA6 GLY C 39 ARG C 55 1 17 HELIX 7 AA7 ASP C 63 ILE C 69 1 7 HELIX 8 AA8 ILE C 69 LEU C 76 1 8 HELIX 9 AA9 PRO C 78 ASP C 94 1 17 HELIX 10 AB1 LEU B 4 GLU B 26 1 23 HELIX 11 AB2 GLY D 2 GLU D 26 1 25 CRYST1 45.958 57.554 98.886 90.00 90.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021759 0.000000 0.000011 0.00000 SCALE2 0.000000 0.017375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010113 0.00000 TER 567 LYS A 95 TER 1154 LYS C 95 TER 1332 GLU B 26 TER 1536 THR D 27 MASTER 460 0 0 11 0 0 0 6 1532 4 0 24 END