HEADER HYDROLASE/IMMUNE SYSTEM 07-OCT-24 9JUB TITLE CRYO-EM STRUCTURE OF HUMAN HYALURONIDASE PH-20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONIDASE PH-20; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYAL-PH20,HYALURONOGLUCOSAMINIDASE PH-20,SPERM ADHESION COMPND 5 MOLECULE 1,SPERM SURFACE PROTEIN PH-20; COMPND 6 EC: 3.2.1.35; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HEAVY CHAIN OF 79C11FAB; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: LIGHT CHAIN OF 79C11FAB; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPAM1, HYAL3, PH20; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 10 ORGANISM_TAXID: 9986; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 15 ORGANISM_TAXID: 9986; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS HYALURONIDASE, ENDOGLYCOSIDASE HYDROLASE, FAB COMPLEX, HYDROLASE, KEYWDS 2 HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.-B.IM,T.-K.JEONG,N.KIM,B.-H.OH REVDAT 4 16-APR-25 9JUB 1 JRNL REVDAT 3 15-JAN-25 9JUB 1 JRNL REVDAT 2 20-NOV-24 9JUB 1 REMARK REVDAT 1 30-OCT-24 9JUB 0 JRNL AUTH S.B.IM,H.N.SONG,T.K.JEONG,N.KIM,K.KIM,S.J.PARK,B.H.OH JRNL TITL CRYO-EM STRUCTURE OF HUMAN HYALURONIDASE PH-20. JRNL REF PROTEINS V. 93 1067 2025 JRNL REFN ESSN 1097-0134 JRNL PMID 39722545 JRNL DOI 10.1002/PROT.26788 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 278638 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9JUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300050881. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF HUMAN HYALURONIDASE REMARK 245 PH-20 AND 79C11FAB; REMARK 245 HYALURONIDASE PH-20; 79C11FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6900.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 133 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 SER B 192 REMARK 465 SER B 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 224 SG CYS A 238 0.71 REMARK 500 SG CYS A 381 SG CYS A 435 1.15 REMARK 500 ND2 ASN A 393 C1 NAG A 503 1.75 REMARK 500 SG CYS B 145 SG CYS B 198 1.78 REMARK 500 O ASP A 223 ND2 ASN A 246 1.93 REMARK 500 CD2 LEU A 398 CE2 PHE A 433 2.09 REMARK 500 CD2 LEU A 398 CZ PHE A 433 2.12 REMARK 500 CD1 LEU A 380 OH TYR C 30 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 225 CE1 TYR A 225 CZ -0.080 REMARK 500 TYR A 225 CZ TYR A 225 CE2 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 381 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 -166.68 -79.60 REMARK 500 PRO A 56 20.26 -80.00 REMARK 500 SER A 57 6.97 -68.21 REMARK 500 LEU A 61 51.82 -93.50 REMARK 500 MET A 70 33.46 -94.23 REMARK 500 TYR A 92 -167.29 -79.76 REMARK 500 ARG A 95 -168.14 -118.43 REMARK 500 THR A 106 109.93 -57.85 REMARK 500 MET A 135 72.28 -157.16 REMARK 500 TYR A 225 81.88 80.18 REMARK 500 PHE A 315 -178.81 -69.57 REMARK 500 THR A 341 -145.70 -136.37 REMARK 500 SER B 161 17.42 55.38 REMARK 500 ALA C 14 -177.23 -69.39 REMARK 500 TYR C 30 -70.42 -66.52 REMARK 500 PRO C 44 -179.70 -67.58 REMARK 500 LYS C 63 116.18 -161.44 REMARK 500 ALA C 84 -166.46 -167.62 REMARK 500 PRO C 144 -165.89 -79.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-61826 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN HYALURONIDASE PH-20 DBREF 9JUB A 37 442 UNP P38567 HYALP_HUMAN 37 442 DBREF 9JUB B 1 216 PDB 9JUB 9JUB 1 216 DBREF 9JUB C 1 212 PDB 9JUB 9JUB 1 212 SEQRES 1 A 406 ASN PHE ARG ALA PRO PRO VAL ILE PRO ASN VAL PRO PHE SEQRES 2 A 406 LEU TRP ALA TRP ASN ALA PRO SER GLU PHE CYS LEU GLY SEQRES 3 A 406 LYS PHE ASP GLU PRO LEU ASP MET SER LEU PHE SER PHE SEQRES 4 A 406 ILE GLY SER PRO ARG ILE ASN ALA THR GLY GLN GLY VAL SEQRES 5 A 406 THR ILE PHE TYR VAL ASP ARG LEU GLY TYR TYR PRO TYR SEQRES 6 A 406 ILE ASP SER ILE THR GLY VAL THR VAL ASN GLY GLY ILE SEQRES 7 A 406 PRO GLN LYS ILE SER LEU GLN ASP HIS LEU ASP LYS ALA SEQRES 8 A 406 LYS LYS ASP ILE THR PHE TYR MET PRO VAL ASP ASN LEU SEQRES 9 A 406 GLY MET ALA VAL ILE ASP TRP GLU GLU TRP ARG PRO THR SEQRES 10 A 406 TRP ALA ARG ASN TRP LYS PRO LYS ASP VAL TYR LYS ASN SEQRES 11 A 406 ARG SER ILE GLU LEU VAL GLN GLN GLN ASN VAL GLN LEU SEQRES 12 A 406 SER LEU THR GLU ALA THR GLU LYS ALA LYS GLN GLU PHE SEQRES 13 A 406 GLU LYS ALA GLY LYS ASP PHE LEU VAL GLU THR ILE LYS SEQRES 14 A 406 LEU GLY LYS LEU LEU ARG PRO ASN HIS LEU TRP GLY TYR SEQRES 15 A 406 TYR LEU PHE PRO ASP CYS TYR ASN HIS HIS TYR LYS LYS SEQRES 16 A 406 PRO GLY TYR ASN GLY SER CYS PHE ASN VAL GLU ILE LYS SEQRES 17 A 406 ARG ASN ASP ASP LEU SER TRP LEU TRP ASN GLU SER THR SEQRES 18 A 406 ALA LEU TYR PRO SER ILE TYR LEU ASN THR GLN GLN SER SEQRES 19 A 406 PRO VAL ALA ALA THR LEU TYR VAL ARG ASN ARG VAL ARG SEQRES 20 A 406 GLU ALA ILE ARG VAL SER LYS ILE PRO ASP ALA LYS SER SEQRES 21 A 406 PRO LEU PRO VAL PHE ALA TYR THR ARG ILE VAL PHE THR SEQRES 22 A 406 ASP GLN VAL LEU LYS PHE LEU SER GLN ASP GLU LEU VAL SEQRES 23 A 406 TYR THR PHE GLY GLU THR VAL ALA LEU GLY ALA SER GLY SEQRES 24 A 406 ILE VAL ILE TRP GLY THR LEU SER ILE MET ARG SER MET SEQRES 25 A 406 LYS SER CYS LEU LEU LEU ASP ASN TYR MET GLU THR ILE SEQRES 26 A 406 LEU ASN PRO TYR ILE ILE ASN VAL THR LEU ALA ALA LYS SEQRES 27 A 406 MET CYS SER GLN VAL LEU CYS GLN GLU GLN GLY VAL CYS SEQRES 28 A 406 ILE ARG LYS ASN TRP ASN SER SER ASP TYR LEU HIS LEU SEQRES 29 A 406 ASN PRO ASP ASN PHE ALA ILE GLN LEU GLU LYS GLY GLY SEQRES 30 A 406 LYS PHE THR VAL ARG GLY LYS PRO THR LEU GLU ASP LEU SEQRES 31 A 406 GLU GLN PHE SER GLU LYS PHE TYR CYS SER CYS TYR SER SEQRES 32 A 406 THR LEU SER SEQRES 1 B 216 GLN SER VAL GLU GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 2 B 216 GLY GLY SER LEU THR LEU THR CYS THR VAL SER GLY PHE SEQRES 3 B 216 SER LEU SER SER ASN ALA ILE SER TRP VAL ARG GLN ALA SEQRES 4 B 216 PRO GLY LYS GLY LEU GLU TYR ILE GLY ILE ILE SER THR SEQRES 5 B 216 SER GLY SER THR TYR TYR ALA ASN TRP ALA LYS GLY ARG SEQRES 6 B 216 PHE THR ILE SER LYS THR SER THR THR VAL ASP LEU LYS SEQRES 7 B 216 MET THR SER LEU THR THR GLU ASP THR ALA THR TYR PHE SEQRES 8 B 216 CYS ALA ARG ASP GLY ALA TYR ASP ASP PHE ALA TYR TYR SEQRES 9 B 216 PHE ASP LEU TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 B 216 SER GLY GLN PRO LYS ALA PRO SER VAL PHE PRO LEU ALA SEQRES 11 B 216 PRO CYS CYS GLY ASP THR PRO SER SER THR VAL THR LEU SEQRES 12 B 216 GLY CYS LEU VAL LYS GLY TYR LEU PRO GLU PRO VAL THR SEQRES 13 B 216 VAL THR TRP ASN SER GLY THR LEU THR ASN GLY VAL ARG SEQRES 14 B 216 THR PHE PRO SER VAL ARG GLN SER SER GLY LEU TYR SER SEQRES 15 B 216 LEU SER SER VAL VAL SER VAL THR SER SER SER GLN PRO SEQRES 16 B 216 VAL THR CYS ASN VAL ALA HIS PRO ALA THR ASN THR LYS SEQRES 17 B 216 VAL ASP LYS THR VAL ALA PRO SER SEQRES 1 C 212 ALA LEU VAL MET THR GLN THR PRO SER SER VAL SER ALA SEQRES 2 C 212 ALA VAL GLY GLY THR VAL THR ILE ASN CYS GLN ALA SER SEQRES 3 C 212 GLN ASN ILE TYR SER GLY LEU ALA TRP TYR GLN GLN LYS SEQRES 4 C 212 LEU GLY GLN PRO PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 C 212 THR LEU ALA SER GLY VAL PRO SER ARG PHE LYS GLY SER SEQRES 6 C 212 GLY SER GLY THR GLN PHE THR LEU THR ILE SER GLY VAL SEQRES 7 C 212 GLN CYS ASP ASP ALA ALA THR TYR TYR CYS GLN LEU ALA SEQRES 8 C 212 TYR SER SER THR ASN VAL ASP ASN ALA PHE GLY GLY GLY SEQRES 9 C 212 THR GLU VAL VAL VAL LYS GLY ASP PRO VAL ALA PRO THR SEQRES 10 C 212 VAL LEU ILE PHE PRO PRO ALA ALA ASP GLN VAL ALA THR SEQRES 11 C 212 GLY THR VAL THR ILE VAL CYS VAL ALA ASN LYS TYR PHE SEQRES 12 C 212 PRO ASP VAL THR VAL THR TRP GLU VAL ASP GLY THR THR SEQRES 13 C 212 GLN THR THR GLY ILE GLU ASN SER LYS THR PRO GLN ASN SEQRES 14 C 212 SER ALA ASP CYS THR TYR ASN LEU SER SER THR LEU THR SEQRES 15 C 212 LEU THR SER THR GLN TYR ASN SER HIS LYS GLU TYR THR SEQRES 16 C 212 CYS LYS VAL THR GLN GLY THR THR SER VAL VAL GLN SER SEQRES 17 C 212 PHE ASN ARG GLY HET NAG D 1 14 HET NAG D 2 14 HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 5(C8 H15 N O6) HELIX 1 AA1 GLN A 121 MET A 135 1 15 HELIX 2 AA2 ASP A 162 ASN A 176 1 15 HELIX 3 AA3 SER A 180 LYS A 189 1 10 HELIX 4 AA4 PHE A 192 LEU A 209 1 18 HELIX 5 AA5 PHE A 239 LEU A 249 1 11 HELIX 6 AA6 LEU A 249 ASN A 254 1 6 HELIX 7 AA7 SER A 270 VAL A 288 1 19 HELIX 8 AA8 SER A 317 ALA A 330 1 14 HELIX 9 AA9 SER A 347 ILE A 361 1 15 HELIX 10 AB1 ILE A 361 CYS A 381 1 21 HELIX 11 AB2 THR A 422 LYS A 432 1 11 HELIX 12 AB3 THR B 83 THR B 87 5 5 HELIX 13 AB4 SER B 161 THR B 163 5 3 HELIX 14 AB5 SER C 185 SER C 190 1 6 SHEET 1 AA1 4 PHE A 75 GLY A 77 0 SHEET 2 AA1 4 LEU A 50 ASN A 54 1 N TRP A 53 O GLY A 77 SHEET 3 AA1 4 GLY A 335 TRP A 339 1 O ILE A 336 N ALA A 52 SHEET 4 AA1 4 PHE A 301 THR A 304 1 N ALA A 302 O VAL A 337 SHEET 1 AA2 3 ILE A 90 PHE A 91 0 SHEET 2 AA2 3 GLY A 141 ILE A 145 1 O VAL A 144 N PHE A 91 SHEET 3 AA2 3 HIS A 214 TYR A 218 1 O GLY A 217 N ILE A 145 SHEET 1 AA3 2 TYR A 101 ILE A 102 0 SHEET 2 AA3 2 THR A 109 VAL A 110 -1 O VAL A 110 N TYR A 101 SHEET 1 AA4 2 ILE A 388 ARG A 389 0 SHEET 2 AA4 2 PHE A 433 TYR A 434 -1 O TYR A 434 N ILE A 388 SHEET 1 AA5 2 ALA A 406 LEU A 409 0 SHEET 2 AA5 2 PHE A 415 ARG A 418 -1 O THR A 416 N GLN A 408 SHEET 1 AA6 4 SER B 2 SER B 6 0 SHEET 2 AA6 4 SER B 16 SER B 24 -1 O THR B 22 N GLU B 4 SHEET 3 AA6 4 THR B 74 THR B 80 -1 O MET B 79 N LEU B 17 SHEET 4 AA6 4 THR B 67 LYS B 70 -1 N THR B 67 O LYS B 78 SHEET 1 AA7 6 LEU B 10 VAL B 11 0 SHEET 2 AA7 6 THR B 112 VAL B 116 1 O THR B 115 N VAL B 11 SHEET 3 AA7 6 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 112 SHEET 4 AA7 6 ILE B 33 GLN B 38 -1 N VAL B 36 O PHE B 91 SHEET 5 AA7 6 LEU B 44 ILE B 50 -1 O GLU B 45 N ARG B 37 SHEET 6 AA7 6 THR B 56 TYR B 58 -1 O TYR B 57 N ILE B 49 SHEET 1 AA8 4 LEU B 10 VAL B 11 0 SHEET 2 AA8 4 THR B 112 VAL B 116 1 O THR B 115 N VAL B 11 SHEET 3 AA8 4 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 112 SHEET 4 AA8 4 PHE B 105 TRP B 108 -1 O LEU B 107 N ARG B 94 SHEET 1 AA9 4 SER B 125 LEU B 129 0 SHEET 2 AA9 4 THR B 140 LYS B 148 -1 O LEU B 146 N PHE B 127 SHEET 3 AA9 4 TYR B 181 THR B 190 -1 O VAL B 189 N VAL B 141 SHEET 4 AA9 4 ARG B 169 THR B 170 -1 N ARG B 169 O VAL B 186 SHEET 1 AB1 4 SER B 125 LEU B 129 0 SHEET 2 AB1 4 THR B 140 LYS B 148 -1 O LEU B 146 N PHE B 127 SHEET 3 AB1 4 TYR B 181 THR B 190 -1 O VAL B 189 N VAL B 141 SHEET 4 AB1 4 VAL B 174 ARG B 175 -1 N VAL B 174 O SER B 182 SHEET 1 AB2 3 THR B 156 TRP B 159 0 SHEET 2 AB2 3 VAL B 196 HIS B 202 -1 O ASN B 199 N THR B 158 SHEET 3 AB2 3 THR B 207 VAL B 213 -1 O VAL B 209 N VAL B 200 SHEET 1 AB3 5 VAL C 11 SER C 12 0 SHEET 2 AB3 5 THR C 105 VAL C 108 1 O GLU C 106 N VAL C 11 SHEET 3 AB3 5 THR C 85 LEU C 90 -1 N TYR C 86 O THR C 105 SHEET 4 AB3 5 LEU C 33 GLN C 38 -1 N ALA C 34 O GLN C 89 SHEET 5 AB3 5 LYS C 45 ILE C 48 -1 O ILE C 48 N TRP C 35 SHEET 1 AB4 3 GLY C 16 GLN C 24 0 SHEET 2 AB4 3 GLN C 70 VAL C 78 -1 O PHE C 71 N CYS C 23 SHEET 3 AB4 3 LYS C 63 SER C 67 -1 N LYS C 63 O THR C 74 SHEET 1 AB5 4 VAL C 118 PHE C 121 0 SHEET 2 AB5 4 THR C 132 TYR C 142 -1 O VAL C 136 N PHE C 121 SHEET 3 AB5 4 TYR C 175 THR C 184 -1 O TYR C 175 N TYR C 142 SHEET 4 AB5 4 ILE C 161 LYS C 165 -1 N GLU C 162 O THR C 180 SHEET 1 AB6 3 THR C 147 VAL C 152 0 SHEET 2 AB6 3 GLU C 193 THR C 199 -1 O LYS C 197 N THR C 149 SHEET 3 AB6 3 SER C 204 ASN C 210 -1 O VAL C 205 N VAL C 198 SSBOND 1 CYS A 60 CYS A 351 1555 1555 2.26 SSBOND 2 CYS A 376 CYS A 387 1555 1555 2.04 SSBOND 3 CYS B 21 CYS B 92 1555 1555 2.03 SSBOND 4 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 5 CYS C 80 CYS C 173 1555 1555 2.03 SSBOND 6 CYS C 137 CYS C 196 1555 1555 2.03 LINK ND2 ASN A 166 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 235 C1 NAG A 502 1555 1555 1.54 LINK ND2 ASN A 368 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 LYS A 159 PRO A 160 0 1.34 CISPEP 2 PHE A 221 PRO A 222 0 10.53 CISPEP 3 GLU B 153 PRO B 154 0 -4.13 CISPEP 4 THR C 7 PRO C 8 0 -0.98 CISPEP 5 PHE C 143 PRO C 144 0 -0.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 197 2556 CONECT 1058 6441 CONECT 1636 6455 CONECT 2556 197 CONECT 2699 6413 CONECT 2754 2834 CONECT 2834 2754 CONECT 3431 3970 CONECT 3970 3431 CONECT 5000 5490 CONECT 5427 6107 CONECT 5490 5000 CONECT 5833 6292 CONECT 6107 5427 CONECT 6292 5833 CONECT 6413 2699 6414 6424 CONECT 6414 6413 6415 6421 CONECT 6415 6414 6416 6422 CONECT 6416 6415 6417 6423 CONECT 6417 6416 6418 6424 CONECT 6418 6417 6425 CONECT 6419 6420 6421 6426 CONECT 6420 6419 CONECT 6421 6414 6419 CONECT 6422 6415 CONECT 6423 6416 6427 CONECT 6424 6413 6417 CONECT 6425 6418 CONECT 6426 6419 CONECT 6427 6423 6428 6438 CONECT 6428 6427 6429 6435 CONECT 6429 6428 6430 6436 CONECT 6430 6429 6431 6437 CONECT 6431 6430 6432 6438 CONECT 6432 6431 6439 CONECT 6433 6434 6435 6440 CONECT 6434 6433 CONECT 6435 6428 6433 CONECT 6436 6429 CONECT 6437 6430 CONECT 6438 6427 6431 CONECT 6439 6432 CONECT 6440 6433 CONECT 6441 1058 6442 6452 CONECT 6442 6441 6443 6449 CONECT 6443 6442 6444 6450 CONECT 6444 6443 6445 6451 CONECT 6445 6444 6446 6452 CONECT 6446 6445 6453 CONECT 6447 6448 6449 6454 CONECT 6448 6447 CONECT 6449 6442 6447 CONECT 6450 6443 CONECT 6451 6444 CONECT 6452 6441 6445 CONECT 6453 6446 CONECT 6454 6447 CONECT 6455 1636 6456 6466 CONECT 6456 6455 6457 6463 CONECT 6457 6456 6458 6464 CONECT 6458 6457 6459 6465 CONECT 6459 6458 6460 6466 CONECT 6460 6459 6467 CONECT 6461 6462 6463 6468 CONECT 6462 6461 CONECT 6463 6456 6461 CONECT 6464 6457 CONECT 6465 6458 CONECT 6466 6455 6459 CONECT 6467 6460 CONECT 6468 6461 CONECT 6469 6470 6480 CONECT 6470 6469 6471 6477 CONECT 6471 6470 6472 6478 CONECT 6472 6471 6473 6479 CONECT 6473 6472 6474 6480 CONECT 6474 6473 6481 CONECT 6475 6476 6477 6482 CONECT 6476 6475 CONECT 6477 6470 6475 CONECT 6478 6471 CONECT 6479 6472 CONECT 6480 6469 6473 CONECT 6481 6474 CONECT 6482 6475 MASTER 211 0 5 14 53 0 0 6 6479 3 85 66 END